Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:44:40 (1079378): wrapper (7.7.26015): starting
22:44:40 (1079378): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 22:44:40] Arguments: --nthreads 3
[2025-11-26 22:44:40] Threads: 3
[2025-11-26 22:44:40] Checking for CVMFS
[2025-11-26 22:44:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:44:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:44:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:44:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:44:40] 2.9.2.0 828885 62 59412 153335 1 88 35750203 36864001 0 130560 0 751299 100.000 2660 2259 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 22:44:40] CVMFS is ok
[2025-11-26 22:44:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:44:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:44:40] Further information can be found at the LHC@home message board.
[2025-11-26 22:44:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:44:40] Checking for apptainer binary...
[2025-11-26 22:44:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:44:40] Running /usr/bin/apptainer --version
[2025-11-26 22:44:40] apptainer version 1.4.1-1.1
[2025-11-26 22:44:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:44:40] thA335
[2025-11-26 22:44:40] apptainer works
[2025-11-26 22:44:40] Set ATHENA_PROC_NUMBER=3
[2025-11-26 22:44:40] Set ATHENA_CORE_NUMBER=3
[2025-11-26 22:44:40] Starting ATLAS job with PandaID=6896990072
[2025-11-26 22:44:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:48:58]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:48:58] 2025-11-26 21:48:10,637 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:48:58] 2025-11-26 21:48:10,637 | INFO     | update_server=False
[2025-11-26 22:48:58] 2025-11-26 21:48:10,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:48:58] 2025-11-26 21:48:10,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:48:58] 2025-11-26 21:48:10,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:48:58] 2025-11-26 21:48:10,638 | INFO     | aborting loop
[2025-11-26 22:48:58] 2025-11-26 21:48:11,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:48:58] 2025-11-26 21:48:11,366 | INFO     | all job control threads have been joined
[2025-11-26 22:48:58] 2025-11-26 21:48:11,472 | INFO     | all data control threads have been joined
[2025-11-26 22:48:58] 2025-11-26 21:48:11,643 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:11,643 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:11,643 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:11,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:11,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:11,911 | INFO     | all payload control threads have been joined
[2025-11-26 22:48:58] 2025-11-26 21:48:12,343 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,372 | INFO     | [job] control thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,478 | INFO     | [data] control thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,793 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,863 | INFO     | [job] validate thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,917 | INFO     | [payload] control thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:12,949 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:13,006 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:13,126 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:13,351 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:13,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:48:58] 2025-11-26 21:48:17,540 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:48:58] 2025-11-26 21:48:40,519 | INFO     | PID=1083098 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:48:58] 2025-11-26 21:48:40,519 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:48:58] 2025-11-26 21:48:40,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:48:58] 2025-11-26 21:48:40,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:48:58] 2025-11-26 21:48:51,562 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:48:58] 2025-11-26 21:48:53,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265384564544)>', '<ExcThread(monitor, started 140264773515008)>']
[2025-11-26 22:48:58] 2025-11-26 21:48:53,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:48:58] 2025-11-26 21:48:53,589 | INFO     | [monitor] control thread has ended
[2025-11-26 22:48:58] 2025-11-26 21:48:58,421 | INFO     | all workflow threads have been joined
[2025-11-26 22:48:58] 2025-11-26 21:48:58,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:48:58] 2025-11-26 21:48:58,422 | INFO     | traces error code: 0
[2025-11-26 22:48:58] 2025-11-26 21:48:58,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:48:58] 2025-11-26 21:48:58,469 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:48:58] 2025-11-26 21:48:58,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:48:58] 2025-11-26 21:48:58,476 [wrapper] pilotpid: 1083098
[2025-11-26 22:48:58] 2025-11-26 21:48:58,478 [wrapper] Pilot exit status: 0
[2025-11-26 22:48:58] 2025-11-26 21:48:58,485 [wrapper] pandaids: 6896990072
[2025-11-26 22:48:58] 2025-11-26 21:48:58,502 [wrapper] cleanup supervisor_pilot 1083104 1083099
[2025-11-26 22:48:58] 2025-11-26 21:48:58,504 [wrapper] Test setup, not cleaning
[2025-11-26 22:48:58] 2025-11-26 21:48:58,507 [wrapper] apfmon messages muted
[2025-11-26 22:48:58] 2025-11-26 21:48:58,509 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:48:58] 2025-11-26 21:48:58,512 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:48:58]  *** Error codes and diagnostics ***
[2025-11-26 22:48:58]     "exeErrorCode": 65,
[2025-11-26 22:48:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 22:48:58]     "pilotErrorCode": 1305,
[2025-11-26 22:48:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 22:48:58]  *** Listing of results directory ***
[2025-11-26 22:48:58] total 403336
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc    576529 Nov 25 13:49 pilot3.tar.gz
[2025-11-26 22:48:58] -rwx------ 1 boinc boinc     36292 Nov 25 14:07 runpilot2-wrapper.sh
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      5112 Nov 25 14:07 queuedata.json
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc       100 Nov 26 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:48:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 22:44 run_atlas
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc       105 Nov 26 22:44 job.xml
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc 408820512 Nov 26 22:44 EVNT.47483658._002168.pool.root.1
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc    590096 Nov 26 22:44 input.tar.gz
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 22:44 start_atlas.sh
[2025-11-26 22:48:58] drwxrwx--x 2 boinc boinc      4096 Nov 26 22:44 shared
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:44 boinc_setup_complete
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      6196 Nov 26 22:44 init_data.xml
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:44 boinc_lockfile
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      2784 Nov 26 22:44 pandaJob.out
[2025-11-26 22:48:58] -rw------- 1 boinc boinc    991538 Nov 26 22:44 agis_schedconf.cvmfs.json
[2025-11-26 22:48:58] -rw------- 1 boinc boinc   1516240 Nov 26 22:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:48:58] drwx------ 5 boinc boinc      4096 Nov 26 22:44 pilot3
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc       524 Nov 26 22:45 boinc_task_state.xml
[2025-11-26 22:48:58] -rw------- 1 boinc boinc       956 Nov 26 22:45 memory_monitor_summary.json
[2025-11-26 22:48:58] -rw------- 1 boinc boinc     55685 Nov 26 22:46 log.47556161._001512.job.log.tgz.1
[2025-11-26 22:48:58] -rw------- 1 boinc boinc        95 Nov 26 22:47 pilot_heartbeat.json
[2025-11-26 22:48:58] -rw------- 1 boinc boinc      8403 Nov 26 22:48 heartbeat.json
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      8192 Nov 26 22:48 boinc_mmap_file
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc        23 Nov 26 22:48 wrapper_checkpoint.txt
[2025-11-26 22:48:58] -rw------- 1 boinc boinc      4752 Nov 26 22:48 pilotlog.txt
[2025-11-26 22:48:58] -rw------- 1 boinc boinc     93742 Nov 26 22:48 log.47556161._001512.job.log.1
[2025-11-26 22:48:58] -rw------- 1 boinc boinc       186 Nov 26 22:48 output.list
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc       620 Nov 26 22:48 runtime_log
[2025-11-26 22:48:58] -rw------- 1 boinc boinc    174080 Nov 26 22:48 result.tar.gz
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      8744 Nov 26 22:48 runtime_log.err
[2025-11-26 22:48:58] -rw------- 1 boinc boinc       648 Nov 26 22:48 lfVMDmsw7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTOMKDmAdvAPo.diag
[2025-11-26 22:48:58] -rw-r--r-- 1 boinc boinc      7889 Nov 26 22:48 stderr.txt
[2025-11-26 22:48:58] No HITS result produced
[2025-11-26 22:48:58]  *** Contents of shared directory: ***
[2025-11-26 22:48:58] total 400012
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc 408820512 Nov 26 22:44 ATLAS.root_0
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc    590096 Nov 26 22:44 input.tar.gz
[2025-11-26 22:48:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 22:44 start_atlas.sh
[2025-11-26 22:48:58] -rw------- 1 boinc boinc    174080 Nov 26 22:48 result.tar.gz
22:48:59 (1079378): run_atlas exited; CPU time 32.110220
22:48:59 (1079378): called boinc_finish(0)

</stderr_txt>
]]>

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