Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 16:31:11 (8328): vboxwrapper version 26210
2025-11-26 16:31:11 (8328): BOINC client version: 8.2.8
2025-11-26 16:31:12 (8328): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-26 16:31:12 (8328): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 16:31:12 (8328): Create VM. (boinc_90c4bda7aed3575e, slot#0)
2025-11-26 16:31:13 (8328): Setting Memory Size for VM. (4300MB)
2025-11-26 16:31:13 (8328): Setting CPU Count for VM. (3)
2025-11-26 16:31:14 (8328): Setting Chipset Options for VM.
2025-11-26 16:31:14 (8328): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 16:31:14 (8328): Setting Boot Options for VM.
2025-11-26 16:31:15 (8328): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 16:31:15 (8328): Enabling VM Network Access.
2025-11-26 16:31:15 (8328): Disabling USB Support for VM.
2025-11-26 16:31:15 (8328): Disabling COM Port Support for VM.
2025-11-26 16:31:16 (8328): Disabling LPT Port Support for VM.
2025-11-26 16:31:16 (8328): Disabling Audio Support for VM.
2025-11-26 16:31:16 (8328): Disabling Clipboard Support for VM.
2025-11-26 16:31:16 (8328): Disabling Drag and Drop Support for VM.
2025-11-26 16:31:17 (8328): Adding storage controller(s) to VM.
2025-11-26 16:31:17 (8328): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 16:31:19 (8328): Adding VirtualBox Guest Additions to VM.
2025-11-26 16:31:19 (8328): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 16:31:20 (8328): forwarding host port 41133 to guest port 80
2025-11-26 16:31:20 (8328): Enabling remote desktop for VM.
2025-11-26 16:31:21 (8328): Enabling shared directory for VM.
2025-11-26 16:31:22 (8328): Starting VM using VBoxManage interface. (boinc_90c4bda7aed3575e, slot#0)
2025-11-26 16:31:28 (8328): Successfully started VM. (PID = '18712')
2025-11-26 16:31:28 (8328): Reporting VM Process ID to BOINC.
2025-11-26 16:31:28 (8328): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-26 16:31:28 (8328): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 16:31:28 (8328): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 16:31:28 (8328): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 16:31:28 (8328): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 16:31:28 (8328): Detected: Web Application Enabled (http://localhost:41133)
2025-11-26 16:31:28 (8328): Detected: Remote Desktop Enabled (localhost:41136)
2025-11-26 16:31:28 (8328): Preference change detected
2025-11-26 16:31:28 (8328): Setting CPU throttle for VM. (100%)
2025-11-26 16:31:28 (8328): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 16:31:30 (8328): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 16:31:30 (8328): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 16:31:33 (8328): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 16:31:33 (8328): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 16:31:33 (8328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 16:31:40 (8328): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 16:31:40 (8328): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 16:31:45 (8328): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000149 main     Log opened 2025-11-26T16:31:44.325497000Z
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000255 main     OS Product: Linux
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000289 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000313 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000336 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000336 main     Process ID: 1290
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.000337 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 16:31:45 (8328): Guest Log: 00:00:00.001355 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 16:31:45 (8328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 16:31:45 (8328): Guest Log: [INFO] Mounting shared directory
2025-11-26 16:31:46 (8328): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 16:31:50 (8328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 16:31:50 (8328): Guest Log: [INFO] Detected branch: prod
2025-11-26 16:31:50 (8328): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 16:31:50 (8328): Guest Log: Copying input files
2025-11-26 16:31:52 (8328): Guest Log: Copied input files into RunAtlas.
2025-11-26 16:31:52 (8328): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 16:31:52 (8328): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 16:31:52 (8328): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 16:31:52 (8328): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 16:31:55 (8328): Guest Log: 00:00:10.005577 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 167 100 000ns (GuestNow=1 764 192 715 494 995 000 ns GuestLast=1 764 174 704 327 895 000 ns fSetTimeLastLoop=true )
2025-11-26 16:32:01 (8328): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 16:32:01 (8328): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 16:32:01 (8328): Guest Log: 2.6.3.0 1568 0 30156 153335 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 16:32:01 (8328): Guest Log: copied the webapp to /var/www
2025-11-26 16:32:01 (8328): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-26 16:32:01 (8328): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-26 16:32:01 (8328): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 16:32:01 (8328): Guest Log:  *** Starting ATLAS job. (PandaID=6892526428 taskID=47493029) ***
2025-11-26 18:11:37 (8328): Status Report: Elapsed Time: '6000.000000'
2025-11-26 18:11:37 (8328): Status Report: CPU Time: '16707.687500'
2025-11-26 19:51:45 (8328): Status Report: Elapsed Time: '12000.000000'
2025-11-26 19:51:45 (8328): Status Report: CPU Time: '34478.765625'
2025-11-26 21:31:56 (8328): Status Report: Elapsed Time: '18000.000000'
2025-11-26 21:31:56 (8328): Status Report: CPU Time: '52280.312500'
2025-11-26 23:12:07 (8328): Status Report: Elapsed Time: '24000.000000'
2025-11-26 23:12:07 (8328): Status Report: CPU Time: '70094.390625'
2025-11-27 00:52:20 (8328): Status Report: Elapsed Time: '30000.000000'
2025-11-27 00:52:20 (8328): Status Report: CPU Time: '87894.968750'
2025-11-27 02:32:29 (8328): Status Report: Elapsed Time: '36000.000000'
2025-11-27 02:32:29 (8328): Status Report: CPU Time: '105650.562500'
2025-11-27 04:12:37 (8328): Status Report: Elapsed Time: '42000.000000'
2025-11-27 04:12:37 (8328): Status Report: CPU Time: '123479.546875'
2025-11-27 05:52:44 (8328): Status Report: Elapsed Time: '48000.000000'
2025-11-27 05:52:44 (8328): Status Report: CPU Time: '141307.546875'
2025-11-27 07:32:53 (8328): Status Report: Elapsed Time: '54000.000000'
2025-11-27 07:32:53 (8328): Status Report: CPU Time: '159131.640625'
2025-11-27 09:08:04 (8328): Guest Log:  *** Job finished ***
2025-11-27 09:08:04 (8328): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:07:59,678 | INFO     | all workflow threads have been joined
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:07:59,678 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:07:59,678 | INFO     | traces error code: 0
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:07:59,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,088 | INFO     | PID=5957 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,089 | INFO     | found 0 job(s) in 20 queues
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,089 | INFO     | [monitor] control thread has ended
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,175 [wrapper] ==== pilot stdout END ====
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,178 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,182 [wrapper] pilotpid: 5957
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,186 [wrapper] Pilot exit status: 0
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,198 [wrapper] pandaids: 6892526428
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,220 [wrapper] cleanup supervisor_pilot 24900 5958
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,223 [wrapper] Test setup, not cleaning
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,227 [wrapper] apfmon messages muted
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,230 [wrapper] ==== wrapper stdout END ====
2025-11-27 09:08:04 (8328): Guest Log: 2025-11-27 14:08:04,234 [wrapper] ==== wrapper stderr END ====
2025-11-27 09:08:04 (8328): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 09:08:04 (8328): Guest Log:     "exeErrorCode": 0,
2025-11-27 09:08:04 (8328): Guest Log:     "exeErrorDiag": "",
2025-11-27 09:08:04 (8328): Guest Log:     "pilotErrorCode": 0,
2025-11-27 09:08:04 (8328): Guest Log:     "pilotErrorDiag": "",
2025-11-27 09:08:04 (8328): Guest Log:  *** Listing of results directory ***
2025-11-27 09:08:04 (8328): Guest Log: total 919044
2025-11-27 09:08:04 (8328): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 07:00 pilot3.tar.gz
2025-11-27 09:08:04 (8328): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 07:10 runpilot2-wrapper.sh
2025-11-27 09:08:04 (8328): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 07:10 queuedata.json
2025-11-27 09:08:04 (8328): Guest Log: -rwxr-xr-x. 1 atlas atlas     11860 Nov 26 21:31 init_data.xml
2025-11-27 09:08:04 (8328): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 26 21:31 input.tar.gz
2025-11-27 09:08:04 (8328): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 26 21:31 start_atlas.sh
2025-11-27 09:08:04 (8328): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 21:31 EVNT.47493027._000103.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 09:08:04 (8328): Guest Log: -rw-r--r--. 1 atlas atlas      2771 Nov 26 21:32 pandaJob.out
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas    991538 Nov 26 21:32 agis_schedconf.cvmfs.json
2025-11-27 09:08:04 (8328): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 21:32 pilot3
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas 918191329 Nov 27 14:06 HITS.47493029._000987.pool.root.1
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 14:07 memory_monitor_summary.json
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 14:07 agis_ddmendpoints.agis.ALL.json
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas   1553325 Nov 27 14:07 log.47493029._000987.job.log.tgz.1
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas      8655 Nov 27 14:07 heartbeat.json
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 14:07 pilot_heartbeat.json
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 14:08 pilotlog.txt
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas   7977482 Nov 27 14:08 log.47493029._000987.job.log.1
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 14:08 output.list
2025-11-27 09:08:04 (8328): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 14:08 runtime_log
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas   9553920 Nov 27 14:08 result.tar.gz
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas       662 Nov 27 14:08 xT4MDmQVrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCvFKDmiPSmvm.diag
2025-11-27 09:08:04 (8328): Guest Log: -rw-r--r--. 1 atlas atlas      8637 Nov 27 14:08 runtime_log.err
2025-11-27 09:08:04 (8328): Guest Log: Looking for outputfile HITS.47493029._000987.pool.root.1
2025-11-27 09:08:04 (8328): Guest Log: HITS file was successfully produced
2025-11-27 09:08:04 (8328): Guest Log: -rw-------. 1 atlas atlas 918191329 Nov 27 14:06 /home/atlas/RunAtlas/HITS.47493029._000987.pool.root.1
2025-11-27 09:08:08 (8328): Guest Log: Successfully finished the ATLAS job!
2025-11-27 09:08:08 (8328): Guest Log: Copying the results back to the shared directory!
2025-11-27 09:08:09 (8328): Guest Log:  *** Contents of shared directory: ***
2025-11-27 09:08:09 (8328): Guest Log: total 1305964
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root 408934551 Nov 26 21:31 ATLAS.root_0
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root 918191329 Nov 27 14:08 HITS.pool.root.1
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root     11860 Nov 26 21:31 init_data.xml
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 26 21:30 input.tar.gz
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root   9553920 Nov 27 14:08 result.tar.gz
2025-11-27 09:08:09 (8328): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 26 21:30 start_atlas.sh
2025-11-27 09:08:09 (8328): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 09:08:09 (8328): VM Completion File Detected.
2025-11-27 09:08:09 (8328): Powering off VM.
2025-11-27 09:08:10 (8328): Successfully stopped VM.
2025-11-27 09:08:10 (8328): Deregistering VM. (boinc_90c4bda7aed3575e, slot#0)
2025-11-27 09:08:10 (8328): Removing network bandwidth throttle group from VM.
2025-11-27 09:08:10 (8328): Removing VM from VirtualBox.
2025-11-27 09:08:16 (8328): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN