Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:18:11 (2433): wrapper (7.7.26015): starting
16:18:11 (2433): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:18:11] Arguments: --nthreads 8
[2025-11-26 16:18:11] Threads: 8
[2025-11-26 16:18:11] Checking for CVMFS
[2025-11-26 16:18:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:18:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:18:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:18:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:18:12] 2.11.4.0 5420 118194 69264 153335 1 72 13457655 18432000 1885 130560 0 83649175 99.973 5011460 31878 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:18:12] CVMFS is ok
[2025-11-26 16:18:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:18:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:18:12] Further information can be found at the LHC@home message board.
[2025-11-26 16:18:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:18:12] Checking for apptainer binary...
[2025-11-26 16:18:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:18:12] Running /usr/bin/apptainer --version
[2025-11-26 16:18:12] apptainer version 1.3.2-1.el7
[2025-11-26 16:18:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:18:13] c-206-22.aglt2.org
[2025-11-26 16:18:13] apptainer works
[2025-11-26 16:18:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:18:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:18:13] Starting ATLAS job with PandaID=6896922940
[2025-11-26 16:18:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:40:06 (20318): wrapper (7.7.26015): starting
08:40:06 (20318): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:40:06] Arguments: --nthreads 8
[2025-11-27 08:40:06] Threads: 8
[2025-11-27 08:40:06] This job has been restarted, cleaning up previous attempt
[2025-11-27 08:40:06] Checking for CVMFS
[2025-11-27 08:40:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:40:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:40:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:40:07] 2.11.4.0 5420 119176 69612 153366 0 56 13695003 18432001 1 130560 0 84544827 99.973 5051086 31902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 08:40:07] CVMFS is ok
[2025-11-27 08:40:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:40:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:40:07] Further information can be found at the LHC@home message board.
[2025-11-27 08:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:40:07] Checking for apptainer binary...
[2025-11-27 08:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:40:07] Running /usr/bin/apptainer --version
[2025-11-27 08:40:07] apptainer version 1.3.2-1.el7
[2025-11-27 08:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:40:08] c-206-22.aglt2.org
[2025-11-27 08:40:08] apptainer works
[2025-11-27 08:40:08] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:40:08] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:40:08] Starting ATLAS job with PandaID=6896922940
[2025-11-27 08:40:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:30:04 (10744): wrapper (7.7.26015): starting
14:30:04 (10744): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:30:04] Arguments: --nthreads 8
[2025-11-27 14:30:04] Threads: 8
[2025-11-27 14:30:04] This job has been restarted, cleaning up previous attempt
[2025-11-27 14:30:04] Checking for CVMFS
[2025-11-27 14:30:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:30:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:30:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:30:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:30:04] 2.11.4.0 5420 119526 69176 153382 0 1 13783709 18432000 1 130560 0 84974776 99.973 5069469 31912 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 14:30:04] CVMFS is ok
[2025-11-27 14:30:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:30:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:30:04] Further information can be found at the LHC@home message board.
[2025-11-27 14:30:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:30:04] Checking for apptainer binary...
[2025-11-27 14:30:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:30:04] Running /usr/bin/apptainer --version
[2025-11-27 14:30:04] apptainer version 1.3.2-1.el7
[2025-11-27 14:30:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:30:05] c-206-22.aglt2.org
[2025-11-27 14:30:05] apptainer works
[2025-11-27 14:30:05] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:30:05] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:30:05] Starting ATLAS job with PandaID=6896922940
[2025-11-27 14:30:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 09:54:40]  *** The last 200 lines of the pilot log: ***
[2025-11-28 09:54:40] 2025-11-28 14:54:06,653 | INFO     | monitor loop #4991: job 0:6896922940 is in state 'finished'
[2025-11-28 09:54:40] 2025-11-28 14:54:06,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,039 | INFO     | time since job start (69829s) is within the limit (172800.0s)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,446 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 09:54:40] 2025-11-28 14:54:07,452 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2489.0
[2025-11-28 09:54:40] 2025-11-28 14:54:07,457 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896922940/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,458 | INFO     | extracted standard info from prmon json
[2025-11-28 09:54:40] 2025-11-28 14:54:07,458 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 09:54:40] 2025-11-28 14:54:07,458 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 09:54:40] 2025-11-28 14:54:07,488 | INFO     | fitting pss+swap vs Time
[2025-11-28 09:54:40] 2025-11-28 14:54:07,490 | INFO     | sum of square deviations: 464253996372.81714
[2025-11-28 09:54:40] 2025-11-28 14:54:07,533 | INFO     | sum of deviations: 2386996046043.1533
[2025-11-28 09:54:40] 2025-11-28 14:54:07,534 | INFO     | mean x: 1764306708.1826923
[2025-11-28 09:54:40] 2025-11-28 14:54:07,534 | INFO     | mean y: 2868883.846153846
[2025-11-28 09:54:40] 2025-11-28 14:54:07,534 | INFO     | intersect: -9068443736.708128
[2025-11-28 09:54:40] 2025-11-28 14:54:07,536 | INFO     | chi2: 4.788330017972223
[2025-11-28 09:54:40] 2025-11-28 14:54:07,537 | INFO     | sum of square deviations: 458193544195.47687
[2025-11-28 09:54:40] 2025-11-28 14:54:07,582 | INFO     | sum of deviations: 2683662092341.6836
[2025-11-28 09:54:40] 2025-11-28 14:54:07,583 | INFO     | mean x: 1764306555.6856892
[2025-11-28 09:54:40] 2025-11-28 14:54:07,583 | INFO     | mean y: 2876342.9376646182
[2025-11-28 09:54:40] 2025-11-28 14:54:07,583 | INFO     | intersect: -10330753806.909275
[2025-11-28 09:54:40] 2025-11-28 14:54:07,585 | INFO     | chi2: 2.586908525300715
[2025-11-28 09:54:40] 2025-11-28 14:54:07,585 | INFO     | current chi2=2.586908525300715 (change=45.97472363869717 %)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,587 | INFO     | sum of square deviations: 452186069755.61597
[2025-11-28 09:54:40] 2025-11-28 14:54:07,631 | INFO     | sum of deviations: 2760316423085.9746
[2025-11-28 09:54:40] 2025-11-28 14:54:07,631 | INFO     | mean x: 1764306403.1887126
[2025-11-28 09:54:40] 2025-11-28 14:54:07,632 | INFO     | mean y: 2878285.1075837743
[2025-11-28 09:54:40] 2025-11-28 14:54:07,632 | INFO     | intersect: -10767121645.915422
[2025-11-28 09:54:40] 2025-11-28 14:54:07,634 | INFO     | chi2: 2.301412267620979
[2025-11-28 09:54:40] 2025-11-28 14:54:07,634 | INFO     | current chi2=2.301412267620979 (change=11.036194549884538 %)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,634 | INFO     | right removable region: 1133
[2025-11-28 09:54:40] 2025-11-28 14:54:07,636 | INFO     | sum of square deviations: 458193137325.8478
[2025-11-28 09:54:40] 2025-11-28 14:54:07,680 | INFO     | sum of deviations: 2106053157912.725
[2025-11-28 09:54:40] 2025-11-28 14:54:07,681 | INFO     | mean x: 1764306860.6848114
[2025-11-28 09:54:40] 2025-11-28 14:54:07,681 | INFO     | mean y: 2875943.4003511854
[2025-11-28 09:54:40] 2025-11-28 14:54:07,681 | INFO     | intersect: -8106638872.029688
[2025-11-28 09:54:40] 2025-11-28 14:54:07,683 | INFO     | chi2: 2.8274499736909555
[2025-11-28 09:54:40] 2025-11-28 14:54:07,683 | INFO     | current chi2=2.8274499736909555 (change=40.95123011407779 %)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,685 | INFO     | sum of square deviations: 452185256138.36523
[2025-11-28 09:54:40] 2025-11-28 14:54:07,728 | INFO     | sum of deviations: 2017106310237.407
[2025-11-28 09:54:40] 2025-11-28 14:54:07,728 | INFO     | mean x: 1764307013.1869488
[2025-11-28 09:54:40] 2025-11-28 14:54:07,729 | INFO     | mean y: 2878200.757495591
[2025-11-28 09:54:40] 2025-11-28 14:54:07,729 | INFO     | intersect: -7867335967.407558
[2025-11-28 09:54:40] 2025-11-28 14:54:07,730 | INFO     | chi2: 2.7470391372236707
[2025-11-28 09:54:40] 2025-11-28 14:54:07,731 | INFO     | current chi2=2.7470391372236707 (change=2.843934895948539 %)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,731 | INFO     | left removable region: 20
[2025-11-28 09:54:40] 2025-11-28 14:54:07,732 | INFO     | sum of square deviations: 427526863271.6781
[2025-11-28 09:54:40] 2025-11-28 14:54:07,773 | INFO     | sum of deviations: 2256715754831.147
[2025-11-28 09:54:40] 2025-11-28 14:54:07,773 | INFO     | mean x: 1764306982.6909254
[2025-11-28 09:54:40] 2025-11-28 14:54:07,774 | INFO     | mean y: 2891038.7969451933
[2025-11-28 09:54:40] 2025-11-28 14:54:07,774 | INFO     | intersect: -9310066125.410742
[2025-11-28 09:54:40] 2025-11-28 14:54:07,775 | INFO     | chi2: 0.20096831698551604
[2025-11-28 09:54:40] 2025-11-28 14:54:07,776 | INFO     | current memory leak: 5.28 B/s (using 1113 data points, chi2=0.20)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,777 | INFO     | could have reported an average CPU frequency of 2580 MHz (42 samples)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,777 | INFO     | ..............................
[2025-11-28 09:54:40] 2025-11-28 14:54:07,777 | INFO     | . Timing measurements:
[2025-11-28 09:54:40] 2025-11-28 14:54:07,777 | INFO     | . get job = 0 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . initial setup = 2 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . payload setup = 7 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . stage-in = 0 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . payload execution = 69788 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . stage-out = 6 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,778 | INFO     | . log creation = 0 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,779 | INFO     | ..............................
[2025-11-28 09:54:40] 2025-11-28 14:54:07,935 | INFO     | 
[2025-11-28 09:54:40] 2025-11-28 14:54:07,936 | INFO     | job summary report
[2025-11-28 09:54:40] 2025-11-28 14:54:07,936 | INFO     | --------------------------------------------------
[2025-11-28 09:54:40] 2025-11-28 14:54:07,936 | INFO     | PanDA job id: 6896922940
[2025-11-28 09:54:40] 2025-11-28 14:54:07,936 | INFO     | task id: 47556173
[2025-11-28 09:54:40] 2025-11-28 14:54:07,936 | INFO     | errors: (none)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | pilot state: finished 
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | transexitcode: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | exeerrorcode: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | exeerrordiag: 
[2025-11-28 09:54:40] 2025-11-28 14:54:07,937 | INFO     | exitcode: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | exitmsg: OK
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | cpuconsumptiontime: 537227 s
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | nevents: 1000
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | neventsw: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | pid: 9897
[2025-11-28 09:54:40] 2025-11-28 14:54:07,938 | INFO     | pgrp: 9897
[2025-11-28 09:54:40] 2025-11-28 14:54:07,939 | INFO     | corecount: 8
[2025-11-28 09:54:40] 2025-11-28 14:54:07,939 | INFO     | event service: False
[2025-11-28 09:54:40] 2025-11-28 14:54:07,939 | INFO     | sizes: {0: 2284142, 1: 2284341, 5: 2284603, 11: 2284659, 69799: 2340967, 69806: 2350303, 69808: 2350487, 69814: 2350511}
[2025-11-28 09:54:40] 2025-11-28 14:54:07,939 | INFO     | --------------------------------------------------
[2025-11-28 09:54:40] 2025-11-28 14:54:07,939 | INFO     | 
[2025-11-28 09:54:40] 2025-11-28 14:54:07,940 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | job 6896922940 has completed (purged errors)
[2025-11-28 09:54:40] 2025-11-28 14:54:07,959 | INFO     | overall cleanup function is called
[2025-11-28 09:54:40] 2025-11-28 14:54:08,972 | INFO     | --- collectZombieJob: --- 10, [9897]
[2025-11-28 09:54:40] 2025-11-28 14:54:08,972 | INFO     | zombie collector waiting for pid 9897
[2025-11-28 09:54:40] 2025-11-28 14:54:08,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 09:54:40] 2025-11-28 14:54:08,972 | INFO     | collected zombie processes
[2025-11-28 09:54:40] 2025-11-28 14:54:08,972 | INFO     | will attempt to kill all subprocesses of pid=9897
[2025-11-28 09:54:40] 2025-11-28 14:54:09,146 | INFO     | process IDs to be killed: [9897] (in reverse order)
[2025-11-28 09:54:40] 2025-11-28 14:54:09,209 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 09:54:40] 2025-11-28 14:54:09,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 09:54:40] 2025-11-28 14:54:09,215 | INFO     | did not find any defunct processes belonging to 9897
[2025-11-28 09:54:40] 2025-11-28 14:54:09,221 | INFO     | did not find any defunct processes belonging to 9897
[2025-11-28 09:54:40] 2025-11-28 14:54:09,222 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 09:54:40] 2025-11-28 14:54:09,223 | INFO     | ready for new job
[2025-11-28 09:54:40] 2025-11-28 14:54:09,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 09:54:40] 2025-11-28 14:54:09,228 | INFO     | ***************************************
[2025-11-28 09:54:40] 2025-11-28 14:54:09,228 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 09:54:40] 2025-11-28 14:54:09,228 | INFO     | ***************************************
[2025-11-28 09:54:40] 2025-11-28 14:54:09,228 | INFO     | 
[2025-11-28 09:54:40] 2025-11-28 14:54:09,229 | INFO     | architecture information:
[2025-11-28 09:54:40] 2025-11-28 14:54:09,230 | INFO     | executing command: cat /etc/os-release
[2025-11-28 09:54:40] 2025-11-28 14:54:09,242 | INFO     | cat /etc/os-release:
[2025-11-28 09:54:40] NAME="CentOS Linux"
[2025-11-28 09:54:40] VERSION="7 (Core)"
[2025-11-28 09:54:40] ID="centos"
[2025-11-28 09:54:40] ID_LIKE="rhel fedora"
[2025-11-28 09:54:40] VERSION_ID="7"
[2025-11-28 09:54:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 09:54:40] ANSI_COLOR="0;31"
[2025-11-28 09:54:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 09:54:40] HOME_URL="https://www.centos.org/"
[2025-11-28 09:54:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 09:54:40] 
[2025-11-28 09:54:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 09:54:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 09:54:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 09:54:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 09:54:40] 
[2025-11-28 09:54:40] 2025-11-28 14:54:09,243 | INFO     | ***************************************
[2025-11-28 09:54:40] 2025-11-28 14:54:09,747 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 09:54:40] 2025-11-28 14:54:09,760 | INFO     | sufficient remaining disk space (25754075136 B)
[2025-11-28 09:54:40] 2025-11-28 14:54:09,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 09:54:40] 2025-11-28 14:54:09,761 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 09:54:40] 2025-11-28 14:54:09,761 | INFO     | update_server=False
[2025-11-28 09:54:40] 2025-11-28 14:54:09,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 09:54:40] 2025-11-28 14:54:09,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:54:40] 2025-11-28 14:54:10,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:54:40] 2025-11-28 14:54:10,181 | INFO     | aborting loop
[2025-11-28 09:54:40] 2025-11-28 14:54:10,253 | INFO     | all payload control threads have been joined
[2025-11-28 09:54:40] 2025-11-28 14:54:10,348 | INFO     | all data control threads have been joined
[2025-11-28 09:54:40] 2025-11-28 14:54:10,766 | INFO     | [job] retrieve thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:10,767 | INFO     | [job] queue monitor thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:10,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 09:54:40] 2025-11-28 14:54:10,935 | INFO     | all job control threads have been joined
[2025-11-28 09:54:40] 2025-11-28 14:54:11,052 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,186 | INFO     | [job] job monitor thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,259 | INFO     | [payload] control thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,295 | INFO     | [payload] failed_post thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,354 | INFO     | [data] control thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,642 | INFO     | [job] validate thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,720 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,862 | INFO     | [payload] validate_post thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:11,940 | INFO     | [job] control thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:12,009 | INFO     | [data] copytool_in thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:12,075 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:12,264 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:12,455 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 09:54:40] 2025-11-28 14:54:12,845 | INFO     | [data] copytool_out thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:14,552 | INFO     | [monitor] cgroup control has ended
[2025-11-28 09:54:40] 2025-11-28 14:54:16,460 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 09:54:40] 2025-11-28 14:54:16,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559976183616)>', '<ExcThread(monitor, started 140559666616064)>']
[2025-11-28 09:54:40] 2025-11-28 14:54:21,589 | INFO     | all workflow threads have been joined
[2025-11-28 09:54:40] 2025-11-28 14:54:21,589 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 09:54:40] 2025-11-28 14:54:21,589 | INFO     | traces error code: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:21,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 09:54:40] 2025-11-28 14:54:40,266 | INFO     | PID=22879 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 09:54:40] 2025-11-28 14:54:40,266 | INFO     | .. there are 3 such processes running
[2025-11-28 09:54:40] 2025-11-28 14:54:40,267 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 09:54:40] 2025-11-28 14:54:40,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 09:54:40] 2025-11-28 14:54:40,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 09:54:40] 2025-11-28 14:54:40,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 09:54:40] 2025-11-28 14:54:40,268 | INFO     | [monitor] control thread has ended
[2025-11-28 09:54:40] 2025-11-28 14:54:40,398 [wrapper] ==== pilot stdout END ====
[2025-11-28 09:54:40] 2025-11-28 14:54:40,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 09:54:40] 2025-11-28 14:54:40,401 [wrapper] pilotpid: 22879
[2025-11-28 09:54:40] 2025-11-28 14:54:40,403 [wrapper] Pilot exit status: 0
[2025-11-28 09:54:40] 2025-11-28 14:54:40,410 [wrapper] pandaids: 6896922940 6896922940 6896922940
[2025-11-28 09:54:40] 2025-11-28 14:54:40,445 [wrapper] cleanup supervisor_pilot 12094 22881
[2025-11-28 09:54:40] 2025-11-28 14:54:40,447 [wrapper] Test setup, not cleaning
[2025-11-28 09:54:40] 2025-11-28 14:54:40,449 [wrapper] apfmon messages muted
[2025-11-28 09:54:40] 2025-11-28 14:54:40,450 [wrapper] ==== wrapper stdout END ====
[2025-11-28 09:54:40] 2025-11-28 14:54:40,452 [wrapper] ==== wrapper stderr END ====
[2025-11-28 09:54:40]  *** Error codes and diagnostics ***
[2025-11-28 09:54:40]     "exeErrorCode": 0,
[2025-11-28 09:54:40]     "exeErrorDiag": "",
[2025-11-28 09:54:40]     "pilotErrorCode": 0,
[2025-11-28 09:54:40]     "pilotErrorDiag": "",
[2025-11-28 09:54:40]  *** Listing of results directory ***
[2025-11-28 09:54:40] total 1717948
[2025-11-28 09:54:40] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 05:51 pilot3.tar.gz
[2025-11-28 09:54:40] -rwx------ 1 boincer umatlas     36292 Nov 25 06:16 runpilot2-wrapper.sh
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 06:16 queuedata.json
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas       100 Nov 26 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 09:54:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 16:18 run_atlas
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas       105 Nov 26 16:18 job.xml
[2025-11-28 09:54:40] -rw-r--r-- 3 boincer umatlas 409062201 Nov 26 16:18 EVNT.47483658._003075.pool.root.1
[2025-11-28 09:54:40] -rw-r--r-- 3 boincer umatlas 409062201 Nov 26 16:18 ATLAS.root_0
[2025-11-28 09:54:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:18 start_atlas.sh
[2025-11-28 09:54:40] drwxrwx--x 2 boincer umatlas      4096 Nov 26 16:18 shared
[2025-11-28 09:54:40] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 16:18 input.tar.gz
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas         0 Nov 26 16:18 boinc_lockfile
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 14:30 pandaJob.out
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas        57 Nov 27 14:30 setup.sh.local
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas    991191 Nov 27 14:30 agis_schedconf.cvmfs.json
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas       535 Nov 28 09:43 boinc_task_state.xml
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas      5955 Nov 28 09:46 init_data.xml
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas 913193714 Nov 28 09:53 HITS.47556173._000579.pool.root.1
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas      1063 Nov 28 09:53 memory_monitor_summary.json
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas   1516240 Nov 28 09:53 agis_ddmendpoints.agis.ALL.json
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas   2312703 Nov 28 09:53 log.47556173._000579.job.log.tgz.1
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas      8657 Nov 28 09:54 heartbeat.json
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 09:54 boinc_mmap_file
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas        31 Nov 28 09:54 wrapper_checkpoint.txt
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas        96 Nov 28 09:54 pilot_heartbeat.json
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas       820 Nov 28 09:54 pilotlog.txt
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas   9660143 Nov 28 09:54 log.47556173._000579.job.log.1
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas       353 Nov 28 09:54 output.list
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas       620 Nov 28 09:54 runtime_log
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas  11991040 Nov 28 09:54 result.tar.gz
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 09:54 runtime_log.err
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas       918 Nov 28 09:54 pqjNDmUD6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjRJKDmI4JMBn.diag
[2025-11-28 09:54:40] -rw-r--r-- 1 boincer umatlas     25594 Nov 28 09:54 stderr.txt
[2025-11-28 09:54:40] HITS file was successfully produced:
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas 913193714 Nov 28 09:53 shared/HITS.pool.root.1
[2025-11-28 09:54:40]  *** Contents of shared directory: ***
[2025-11-28 09:54:40] total 1303580
[2025-11-28 09:54:40] -rw-r--r-- 3 boincer umatlas 409062201 Nov 26 16:18 ATLAS.root_0
[2025-11-28 09:54:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:18 start_atlas.sh
[2025-11-28 09:54:40] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 16:18 input.tar.gz
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas 913193714 Nov 28 09:53 HITS.pool.root.1
[2025-11-28 09:54:40] -rw------- 1 boincer umatlas  11991040 Nov 28 09:54 result.tar.gz
09:54:41 (10744): run_atlas exited; CPU time 535861.609019
09:54:41 (10744): called boinc_finish(0)

</stderr_txt>
]]>

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