Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:55 (3871598): wrapper (7.7.26015): starting
16:37:55 (3871598): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:37:55] Arguments: --nthreads 8
[2025-11-26 16:37:55] Threads: 8
[2025-11-26 16:37:55] Checking for CVMFS
[2025-11-26 16:37:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:37:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:37:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:37:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:37:57] 2.13.3.0 7314 30539 262852 153335 2 966 28271740 40960001 63684 16776704 0 450138460 99.749 283718171 50570 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:37:57] CVMFS is ok
[2025-11-26 16:37:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:37:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:37:57] Further information can be found at the LHC@home message board.
[2025-11-26 16:37:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:37:57] Checking for apptainer binary...
[2025-11-26 16:37:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:37:57] Running /usr/bin/apptainer --version
[2025-11-26 16:37:57] apptainer version 1.4.4-1.el9
[2025-11-26 16:37:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:37:58] c8-16-1.aglt2.org
[2025-11-26 16:37:58] apptainer works
[2025-11-26 16:37:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:37:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:37:58] Starting ATLAS job with PandaID=6896924108
[2025-11-26 16:37:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:53:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:53:28] 2025-11-27 03:52:27,537 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:53:28] 2025-11-27 03:52:27,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:53:28] 2025-11-27 03:52:27,570 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:53:28] 2025-11-27 03:52:27,571 | INFO     | sum of square deviations: 15202472056.341616
[2025-11-26 22:53:28] 2025-11-27 03:52:27,573 | INFO     | sum of deviations: 101249371012.25952
[2025-11-26 22:53:28] 2025-11-27 03:52:27,597 | INFO     | mean x: 1764204340.2595627
[2025-11-26 22:53:28] 2025-11-27 03:52:27,597 | INFO     | mean y: 2812394.9972677594
[2025-11-26 22:53:28] 2025-11-27 03:52:27,597 | INFO     | intersect: -11746893779.523663
[2025-11-26 22:53:28] 2025-11-27 03:52:27,598 | INFO     | chi2: 7.8425037596409135
[2025-11-26 22:53:28] 2025-11-27 03:52:27,598 | INFO     | sum of square deviations: 14588080193.146885
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | sum of deviations: 228059272401.21042
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | mean x: 1764204187.7839334
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | mean y: 2843887.1052631577
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | intersect: -27577421514.930504
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | chi2: 4.216505714310181
[2025-11-26 22:53:28] 2025-11-27 03:52:27,600 | INFO     | current chi2=4.216505714310181 (change=46.23520952569816 %)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,601 | INFO     | sum of square deviations: 13990457567.626364
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | sum of deviations: 308197468933.62604
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | mean x: 1764204035.3061798
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | mean y: 2864250.3061797754
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | intersect: -38860998188.47627
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | chi2: 2.2985940678876893
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | current chi2=2.2985940678876893 (change=45.485806883016686 %)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,629 | INFO     | sum of square deviations: 13409240780.210766
[2025-11-26 22:53:28] 2025-11-27 03:52:27,656 | INFO     | sum of deviations: 301924941477.36774
[2025-11-26 22:53:28] 2025-11-27 03:52:27,656 | INFO     | mean x: 1764203882.8091168
[2025-11-26 22:53:28] 2025-11-27 03:52:27,656 | INFO     | mean y: 2862598.5726495725
[2025-11-26 22:53:28] 2025-11-27 03:52:27,656 | INFO     | intersect: -39720277794.08687
[2025-11-26 22:53:28] 2025-11-27 03:52:27,657 | INFO     | chi2: 2.2916616803228065
[2025-11-26 22:53:28] 2025-11-27 03:52:27,657 | INFO     | current chi2=2.2916616803228065 (change=0.30159251090617156 %)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,657 | INFO     | right removable region: 350
[2025-11-26 22:53:28] 2025-11-27 03:52:27,657 | INFO     | sum of square deviations: 14587709437.71191
[2025-11-26 22:53:28] 2025-11-27 03:52:27,659 | INFO     | sum of deviations: 11322400661.963879
[2025-11-26 22:53:28] 2025-11-27 03:52:27,659 | INFO     | mean x: 1764204492.7811635
[2025-11-26 22:53:28] 2025-11-27 03:52:27,659 | INFO     | mean y: 2834605.8476454294
[2025-11-26 22:53:28] 2025-11-27 03:52:27,663 | INFO     | intersect: -1366470849.6933024
[2025-11-26 22:53:28] 2025-11-27 03:52:27,664 | INFO     | chi2: 5.716442774899106
[2025-11-26 22:53:28] 2025-11-27 03:52:27,664 | INFO     | current chi2=5.716442774899106 (change=27.109467204631017 %)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,664 | INFO     | sum of square deviations: 13989781756.438137
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | sum of deviations: -6739358169.061745
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | mean x: 1764204645.2977529
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | mean y: 2839207.047752809
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | intersect: 852717153.3361185
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | chi2: 5.678136670455323
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | current chi2=5.678136670455323 (change=0.6701038731986433 %)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | left removable region: 20
[2025-11-26 22:53:28] 2025-11-27 03:52:27,666 | INFO     | sum of square deviations: 11143245870.363682
[2025-11-26 22:53:28] 2025-11-27 03:52:27,694 | INFO     | sum of deviations: 164333326697.63638
[2025-11-26 22:53:28] 2025-11-27 03:52:27,694 | INFO     | mean x: 1764204462.3636363
[2025-11-26 22:53:28] 2025-11-27 03:52:27,694 | INFO     | mean y: 2899667.6363636362
[2025-11-26 22:53:28] 2025-11-27 03:52:27,694 | INFO     | intersect: -26014437798.289024
[2025-11-26 22:53:28] 2025-11-27 03:52:27,695 | INFO     | chi2: 0.02340010591458863
[2025-11-26 22:53:28] 2025-11-27 03:52:27,695 | INFO     | current memory leak: 14.75 B/s (using 330 data points, chi2=0.02)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,695 | INFO     | could have reported an average CPU frequency of 3797 MHz (16 samples)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | ..............................
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . Timing measurements:
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . get job = 0 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . initial setup = 2 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . payload setup = 25 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . stage-in = 0 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . payload execution = 22313 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . stage-out = 5 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | . log creation = 1 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,696 | INFO     | ..............................
[2025-11-26 22:53:28] 2025-11-27 03:52:27,906 | INFO     | 
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | job summary report
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | --------------------------------------------------
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | PanDA job id: 6896924108
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | task id: 47556173
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | errors: (none)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | pilot state: finished 
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | transexitcode: 0
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | exeerrorcode: 0
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | exeerrordiag: 
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | exitcode: 0
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | exitmsg: OK
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | cpuconsumptiontime: 133782 s
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | nevents: 1000
[2025-11-26 22:53:28] 2025-11-27 03:52:27,907 | INFO     | neventsw: 0
[2025-11-26 22:53:28] 2025-11-27 03:52:27,908 | INFO     | pid: 3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | pgrp: 3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | corecount: 8
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | event service: False
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | sizes: {0: 2284035, 1: 2284290, 11: 2284290, 17: 2284580, 22: 2284608, 22343: 2318765, 22350: 2327759, 22353: 2327815, 22384: 2328061}
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | --------------------------------------------------
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | 
[2025-11-26 22:53:28] 2025-11-27 03:52:27,909 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 22:53:28] 2025-11-27 03:52:27,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | job 6896924108 has completed (purged errors)
[2025-11-26 22:53:28] 2025-11-27 03:52:27,964 | INFO     | overall cleanup function is called
[2025-11-26 22:53:28] 2025-11-27 03:52:28,987 | INFO     | --- collectZombieJob: --- 10, [3899877]
[2025-11-26 22:53:28] 2025-11-27 03:52:28,987 | INFO     | zombie collector waiting for pid 3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:28,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:53:28] 2025-11-27 03:52:28,987 | INFO     | collected zombie processes
[2025-11-26 22:53:28] 2025-11-27 03:52:28,987 | INFO     | will attempt to kill all subprocesses of pid=3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:30,936 | INFO     | process IDs to be killed: [3899877] (in reverse order)
[2025-11-26 22:53:28] 2025-11-27 03:52:31,497 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:53:28] 2025-11-27 03:52:31,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:53:28] 2025-11-27 03:52:31,564 | INFO     | did not find any defunct processes belonging to 3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:31,636 | INFO     | did not find any defunct processes belonging to 3899877
[2025-11-26 22:53:28] 2025-11-27 03:52:31,640 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:53:28] 2025-11-27 03:52:31,641 | INFO     | ready for new job
[2025-11-26 22:53:28] 2025-11-27 03:52:31,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:53:28] 2025-11-27 03:52:31,644 | INFO     | ***************************************
[2025-11-26 22:53:28] 2025-11-27 03:52:31,644 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:53:28] 2025-11-27 03:52:31,644 | INFO     | ***************************************
[2025-11-26 22:53:28] 2025-11-27 03:52:31,644 | INFO     | 
[2025-11-26 22:53:28] 2025-11-27 03:52:31,653 | INFO     | architecture information:
[2025-11-26 22:53:28] 2025-11-27 03:52:31,661 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:53:28] 2025-11-27 03:52:31,764 | INFO     | cat /etc/os-release:
[2025-11-26 22:53:28] NAME="CentOS Linux"
[2025-11-26 22:53:28] VERSION="7 (Core)"
[2025-11-26 22:53:28] ID="centos"
[2025-11-26 22:53:28] ID_LIKE="rhel fedora"
[2025-11-26 22:53:28] VERSION_ID="7"
[2025-11-26 22:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:53:28] ANSI_COLOR="0;31"
[2025-11-26 22:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:53:28] HOME_URL="https://www.centos.org/"
[2025-11-26 22:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:53:28] 
[2025-11-26 22:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:53:28] 
[2025-11-26 22:53:28] 2025-11-27 03:52:31,765 | INFO     | ***************************************
[2025-11-26 22:53:28] 2025-11-27 03:52:32,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 22:53:28] 2025-11-27 03:52:32,289 | INFO     | sufficient remaining disk space (158981947392 B)
[2025-11-26 22:53:28] 2025-11-27 03:52:32,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:53:28] 2025-11-27 03:52:32,290 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:53:28] 2025-11-27 03:52:32,290 | INFO     | update_server=False
[2025-11-26 22:53:28] 2025-11-27 03:52:32,290 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:53:28] 2025-11-27 03:52:32,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:53:28] 2025-11-27 03:52:32,296 | INFO     | aborting loop
[2025-11-26 22:53:28] 2025-11-27 03:52:32,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:53:28] 2025-11-27 03:52:32,475 | INFO     | all data control threads have been joined
[2025-11-26 22:53:28] 2025-11-27 03:52:32,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:53:28] 2025-11-27 03:52:33,191 | INFO     | all payload control threads have been joined
[2025-11-26 22:53:28] 2025-11-27 03:52:33,301 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,312 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,323 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,485 | INFO     | [data] control thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,843 | INFO     | all job control threads have been joined
[2025-11-26 22:53:28] 2025-11-27 03:52:33,923 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,954 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:33,980 | INFO     | [job] validate thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,183 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,197 | INFO     | [payload] control thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,313 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,440 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,443 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,542 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:34,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:53:28] 2025-11-27 03:52:34,867 | INFO     | [job] control thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:52:38,791 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:53:28] 2025-11-27 03:53:00,482 | INFO     | PID=3882965 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:53:28] 2025-11-27 03:53:00,483 | INFO     | .. there are 86 such processes running
[2025-11-26 22:53:28] 2025-11-27 03:53:00,506 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:53:28] 2025-11-27 03:53:00,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:53:28] 2025-11-27 03:53:00,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:53:28] 2025-11-27 03:53:20,941 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:53:28] 2025-11-27 03:53:22,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140206451681088)>', '<ExcThread(monitor, started 140205491209984)>']
[2025-11-26 22:53:28] 2025-11-27 03:53:22,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:53:28] 2025-11-27 03:53:22,711 | INFO     | [monitor] control thread has ended
[2025-11-26 22:53:28] 2025-11-27 03:53:27,386 | INFO     | all workflow threads have been joined
[2025-11-26 22:53:28] 2025-11-27 03:53:27,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:53:28] 2025-11-27 03:53:27,386 | INFO     | traces error code: 0
[2025-11-26 22:53:28] 2025-11-27 03:53:27,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:53:28] 2025-11-27 03:53:27,624 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:53:28] 2025-11-27 03:53:27,654 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:53:28] 2025-11-27 03:53:27,667 [wrapper] pilotpid: 3882965
[2025-11-26 22:53:28] 2025-11-27 03:53:27,669 [wrapper] Pilot exit status: 0
[2025-11-26 22:53:28] 2025-11-27 03:53:27,792 [wrapper] pandaids: 6896924108
[2025-11-26 22:53:28] 2025-11-27 03:53:28,316 [wrapper] cleanup supervisor_pilot 3476171 3882966
[2025-11-26 22:53:28] 2025-11-27 03:53:28,325 [wrapper] Test setup, not cleaning
[2025-11-26 22:53:28] 2025-11-27 03:53:28,343 [wrapper] apfmon messages muted
[2025-11-26 22:53:28] 2025-11-27 03:53:28,350 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:53:28] 2025-11-27 03:53:28,362 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:53:28]  *** Error codes and diagnostics ***
[2025-11-26 22:53:28]     "exeErrorCode": 0,
[2025-11-26 22:53:28]     "exeErrorDiag": "",
[2025-11-26 22:53:28]     "pilotErrorCode": 0,
[2025-11-26 22:53:28]     "pilotErrorDiag": "",
[2025-11-26 22:53:28]  *** Listing of results directory ***
[2025-11-26 22:53:28] total 1314876
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 06:41 queuedata.json
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 06:41 pilot3.tar.gz
[2025-11-26 22:53:28] -rwx------. 1 boincer umatlas     36292 Nov 25 06:42 runpilot2-wrapper.sh
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:53:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:37 run_atlas
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:37 job.xml
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas 408824076 Nov 26 16:37 EVNT.47483658._003079.pool.root.1
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:37 start_atlas.sh
[2025-11-26 22:53:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:37 shared
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 16:37 input.tar.gz
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:37 boinc_lockfile
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 16:37 pandaJob.out
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas        57 Nov 26 16:37 setup.sh.local
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas    991538 Nov 26 16:38 agis_schedconf.cvmfs.json
[2025-11-26 22:53:28] drwx------. 5 boincer umatlas      4096 Nov 26 16:38 pilot3
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:40 boinc_task_state.xml
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas      7174 Nov 26 22:48 init_data.xml
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas 924631977 Nov 26 22:50 HITS.47556173._000612.pool.root.1
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas      1050 Nov 26 22:51 memory_monitor_summary.json
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:51 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas   1648127 Nov 26 22:51 log.47556173._000612.job.log.tgz.1
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas      7904 Nov 26 22:52 heartbeat.json
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas        95 Nov 26 22:53 pilot_heartbeat.json
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:53 wrapper_checkpoint.txt
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:53 boinc_mmap_file
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas      4825 Nov 26 22:53 pilotlog.txt
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas   2880434 Nov 26 22:53 log.47556173._000612.job.log.1
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas       353 Nov 26 22:53 output.list
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:53 runtime_log
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas   4546560 Nov 26 22:53 result.tar.gz
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 22:53 runtime_log.err
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas       658 Nov 26 22:53 MwCODmQc6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJMMKDmGmJOrm.diag
[2025-11-26 22:53:28] -rw-r--r--. 1 boincer umatlas     21163 Nov 26 22:53 stderr.txt
[2025-11-26 22:53:28] HITS file was successfully produced:
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas 924631977 Nov 26 22:50 shared/HITS.pool.root.1
[2025-11-26 22:53:28]  *** Contents of shared directory: ***
[2025-11-26 22:53:28] total 1307252
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas 408824076 Nov 26 16:37 ATLAS.root_0
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:37 start_atlas.sh
[2025-11-26 22:53:28] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 16:37 input.tar.gz
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas 924631977 Nov 26 22:50 HITS.pool.root.1
[2025-11-26 22:53:28] -rw-------. 1 boincer umatlas   4546560 Nov 26 22:53 result.tar.gz
22:53:30 (3871598): run_atlas exited; CPU time 134119.860692
22:53:30 (3871598): called boinc_finish(0)

</stderr_txt>
]]>

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