Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:49:02 (1100189): wrapper (7.7.26015): starting
22:49:02 (1100189): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 22:49:02] Arguments: --nthreads 3
[2025-11-26 22:49:02] Threads: 3
[2025-11-26 22:49:02] Checking for CVMFS
[2025-11-26 22:49:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:49:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:49:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:49:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:49:02] 2.9.2.0 828885 67 59788 153335 1 88 35750222 36864001 0 130560 0 813904 100.000 2661 2256 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 22:49:02] CVMFS is ok
[2025-11-26 22:49:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:49:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:49:02] Further information can be found at the LHC@home message board.
[2025-11-26 22:49:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:49:02] Checking for apptainer binary...
[2025-11-26 22:49:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:49:02] Running /usr/bin/apptainer --version
[2025-11-26 22:49:02] apptainer version 1.4.1-1.1
[2025-11-26 22:49:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:49:02] thA335
[2025-11-26 22:49:02] apptainer works
[2025-11-26 22:49:02] Set ATHENA_PROC_NUMBER=3
[2025-11-26 22:49:02] Set ATHENA_CORE_NUMBER=3
[2025-11-26 22:49:02] Starting ATLAS job with PandaID=6896923320
[2025-11-26 22:49:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:53:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:53:18] 2025-11-26 21:52:30,099 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:53:18] 2025-11-26 21:52:30,099 | INFO     | update_server=False
[2025-11-26 22:53:18] 2025-11-26 21:52:30,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:53:18] 2025-11-26 21:52:30,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:53:18] 2025-11-26 21:52:30,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:53:18] 2025-11-26 21:52:30,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:53:18] 2025-11-26 21:52:30,220 | INFO     | all job control threads have been joined
[2025-11-26 22:53:18] 2025-11-26 21:52:30,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:53:18] 2025-11-26 21:52:30,909 | INFO     | aborting loop
[2025-11-26 22:53:18] 2025-11-26 21:52:30,971 | INFO     | all data control threads have been joined
[2025-11-26 22:53:18] 2025-11-26 21:52:31,023 | INFO     | all payload control threads have been joined
[2025-11-26 22:53:18] 2025-11-26 21:52:31,105 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,106 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,226 | INFO     | [job] control thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,794 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,914 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,977 | INFO     | [data] control thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:31,984 | INFO     | [job] validate thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,030 | INFO     | [payload] control thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,046 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,046 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,106 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,108 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,108 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:32,626 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:52:34,107 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:53:18] 2025-11-26 21:53:01,148 | INFO     | PID=1103910 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:53:18] 2025-11-26 21:53:01,148 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:53:18] 2025-11-26 21:53:01,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:53:18] 2025-11-26 21:53:01,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:53:18] 2025-11-26 21:53:12,336 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:53:18] 2025-11-26 21:53:13,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233904658240)>', '<ExcThread(monitor, started 140233257494272)>']
[2025-11-26 22:53:18] 2025-11-26 21:53:14,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:53:18] 2025-11-26 21:53:14,212 | INFO     | [monitor] control thread has ended
[2025-11-26 22:53:18] 2025-11-26 21:53:18,823 | INFO     | all workflow threads have been joined
[2025-11-26 22:53:18] 2025-11-26 21:53:18,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:53:18] 2025-11-26 21:53:18,824 | INFO     | traces error code: 0
[2025-11-26 22:53:18] 2025-11-26 21:53:18,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:53:18] 2025-11-26 21:53:18,869 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:53:18] 2025-11-26 21:53:18,872 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:53:18] 2025-11-26 21:53:18,875 [wrapper] pilotpid: 1103910
[2025-11-26 22:53:18] 2025-11-26 21:53:18,878 [wrapper] Pilot exit status: 0
[2025-11-26 22:53:18] 2025-11-26 21:53:18,885 [wrapper] pandaids: 6896923320
[2025-11-26 22:53:18] 2025-11-26 21:53:18,901 [wrapper] cleanup supervisor_pilot 1103916 1103911
[2025-11-26 22:53:18] 2025-11-26 21:53:18,903 [wrapper] Test setup, not cleaning
[2025-11-26 22:53:18] 2025-11-26 21:53:18,906 [wrapper] apfmon messages muted
[2025-11-26 22:53:18] 2025-11-26 21:53:18,908 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:53:18] 2025-11-26 21:53:18,910 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:53:18]  *** Error codes and diagnostics ***
[2025-11-26 22:53:18]     "exeErrorCode": 65,
[2025-11-26 22:53:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 22:53:18]     "pilotErrorCode": 1305,
[2025-11-26 22:53:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 22:53:18]  *** Listing of results directory ***
[2025-11-26 22:53:18] total 404784
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      5112 Nov 25 12:28 queuedata.json
[2025-11-26 22:53:18] -rwx------ 1 boinc boinc     36292 Nov 25 12:29 runpilot2-wrapper.sh
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc       100 Nov 26 22:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:53:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 22:49 run_atlas
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc       105 Nov 26 22:49 job.xml
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc 410309399 Nov 26 22:49 EVNT.47483658._003077.pool.root.1
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc    590101 Nov 26 22:49 input.tar.gz
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc     15847 Nov 26 22:49 start_atlas.sh
[2025-11-26 22:53:18] drwxrwx--x 2 boinc boinc      4096 Nov 26 22:49 shared
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:49 boinc_setup_complete
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      6196 Nov 26 22:49 init_data.xml
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc         0 Nov 26 22:49 boinc_lockfile
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      2784 Nov 26 22:49 pandaJob.out
[2025-11-26 22:53:18] -rw------- 1 boinc boinc    991538 Nov 26 22:49 agis_schedconf.cvmfs.json
[2025-11-26 22:53:18] -rw------- 1 boinc boinc   1516240 Nov 26 22:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:53:18] drwx------ 5 boinc boinc      4096 Nov 26 22:49 pilot3
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc       522 Nov 26 22:50 boinc_task_state.xml
[2025-11-26 22:53:18] -rw------- 1 boinc boinc       955 Nov 26 22:50 memory_monitor_summary.json
[2025-11-26 22:53:18] -rw------- 1 boinc boinc     54313 Nov 26 22:50 log.47556173._000600.job.log.tgz.1
[2025-11-26 22:53:18] -rw------- 1 boinc boinc        95 Nov 26 22:52 pilot_heartbeat.json
[2025-11-26 22:53:18] -rw------- 1 boinc boinc      8399 Nov 26 22:52 heartbeat.json
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      8192 Nov 26 22:53 boinc_mmap_file
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc        22 Nov 26 22:53 wrapper_checkpoint.txt
[2025-11-26 22:53:18] -rw------- 1 boinc boinc      4752 Nov 26 22:53 pilotlog.txt
[2025-11-26 22:53:18] -rw------- 1 boinc boinc     93735 Nov 26 22:53 log.47556173._000600.job.log.1
[2025-11-26 22:53:18] -rw------- 1 boinc boinc       186 Nov 26 22:53 output.list
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc       620 Nov 26 22:53 runtime_log
[2025-11-26 22:53:18] -rw------- 1 boinc boinc    163840 Nov 26 22:53 result.tar.gz
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      8744 Nov 26 22:53 runtime_log.err
[2025-11-26 22:53:18] -rw------- 1 boinc boinc       649 Nov 26 22:53 kBkKDmVP6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaLMKDm6RNR6n.diag
[2025-11-26 22:53:18] -rw-r--r-- 1 boinc boinc      7889 Nov 26 22:53 stderr.txt
[2025-11-26 22:53:18] No HITS result produced
[2025-11-26 22:53:18]  *** Contents of shared directory: ***
[2025-11-26 22:53:18] total 401456
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc 410309399 Nov 26 22:49 ATLAS.root_0
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc    590101 Nov 26 22:49 input.tar.gz
[2025-11-26 22:53:18] -rw-r--r-- 2 boinc boinc     15847 Nov 26 22:49 start_atlas.sh
[2025-11-26 22:53:18] -rw------- 1 boinc boinc    163840 Nov 26 22:53 result.tar.gz
22:53:20 (1100189): run_atlas exited; CPU time 31.473630
22:53:20 (1100189): called boinc_finish(0)

</stderr_txt>
]]>

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