Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:28:52 (193327): wrapper (7.7.26015): starting
16:28:52 (193327): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:28:52] Arguments: --nthreads 8
[2025-11-26 16:28:52] Threads: 8
[2025-11-26 16:28:52] Checking for CVMFS
[2025-11-26 16:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:28:52] 2.13.3.0 12213 30591 253676 153335 3 931 36088623 40960000 55291 16776704 0 281720947 99.727 201333984 35547 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:28:52] CVMFS is ok
[2025-11-26 16:28:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:28:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:28:52] Further information can be found at the LHC@home message board.
[2025-11-26 16:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:28:52] Checking for apptainer binary...
[2025-11-26 16:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:28:52] Running /usr/bin/apptainer --version
[2025-11-26 16:28:52] apptainer version 1.4.4-1.el9
[2025-11-26 16:28:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:28:52] c7-3-35.aglt2.org
[2025-11-26 16:28:52] apptainer works
[2025-11-26 16:28:53] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:28:53] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:28:53] Starting ATLAS job with PandaID=6896297149
[2025-11-26 16:28:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:01:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:01:40] 2025-11-27 11:00:49,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:01:40] 2025-11-27 11:00:49,536 | INFO     | time since job start (48700s) is within the limit (172800.0s)
[2025-11-27 06:01:40] 2025-11-27 11:00:51,546 | INFO     | time since job start (48702s) is within the limit (172800.0s)
[2025-11-27 06:01:40] 2025-11-27 11:00:51,590 | INFO     | monitor loop #3184: job 0:6896297149 is in state 'finished'
[2025-11-27 06:01:40] 2025-11-27 11:00:51,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:01:40] 2025-11-27 11:00:53,552 | INFO     | time since job start (48704s) is within the limit (172800.0s)
[2025-11-27 06:01:40] 2025-11-27 11:00:54,096 | INFO     | monitor loop #3185: job 0:6896297149 is in state 'finished'
[2025-11-27 06:01:40] 2025-11-27 11:00:54,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,560 | INFO     | time since job start (48706s) is within the limit (172800.0s)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,634 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:01:40] 2025-11-27 11:00:55,640 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3338.3005520833335
[2025-11-27 06:01:40] 2025-11-27 11:00:55,658 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896297149/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,662 | INFO     | extracted standard info from prmon json
[2025-11-27 06:01:40] 2025-11-27 11:00:55,662 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:01:40] 2025-11-27 11:00:55,662 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:01:40] 2025-11-27 11:00:55,684 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:01:40] 2025-11-27 11:00:55,684 | INFO     | sum of square deviations: 157574357017.25302
[2025-11-27 06:01:40] 2025-11-27 11:00:55,695 | INFO     | sum of deviations: 6472640400897.176
[2025-11-27 06:01:40] 2025-11-27 11:00:55,696 | INFO     | mean x: 1764216894.5175438
[2025-11-27 06:01:40] 2025-11-27 11:00:55,696 | INFO     | mean y: 3335113.522556391
[2025-11-27 06:01:40] 2025-11-27 11:00:55,696 | INFO     | intersect: -72464938046.8706
[2025-11-27 06:01:40] 2025-11-27 11:00:55,697 | INFO     | chi2: 12.166390481901797
[2025-11-27 06:01:40] 2025-11-27 11:00:55,697 | INFO     | sum of square deviations: 154631191344.54443
[2025-11-27 06:01:40] 2025-11-27 11:00:55,707 | INFO     | sum of deviations: 6796106436107.877
[2025-11-27 06:01:40] 2025-11-27 11:00:55,707 | INFO     | mean x: 1764216742.0239596
[2025-11-27 06:01:40] 2025-11-27 11:00:55,707 | INFO     | mean y: 3351877.1639344264
[2025-11-27 06:01:40] 2025-11-27 11:00:55,708 | INFO     | intersect: -77534722109.7524
[2025-11-27 06:01:40] 2025-11-27 11:00:55,708 | INFO     | chi2: 8.804622657370604
[2025-11-27 06:01:40] 2025-11-27 11:00:55,708 | INFO     | current chi2=8.804622657370604 (change=27.631595661276982 %)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,709 | INFO     | sum of square deviations: 151724813706.38623
[2025-11-27 06:01:40] 2025-11-27 11:00:55,744 | INFO     | sum of deviations: 6796912957515.579
[2025-11-27 06:01:40] 2025-11-27 11:00:55,744 | INFO     | mean x: 1764216589.5279188
[2025-11-27 06:01:40] 2025-11-27 11:00:55,744 | INFO     | mean y: 3351895.0418781727
[2025-11-27 06:01:40] 2025-11-27 11:00:55,745 | INFO     | intersect: -79029380486.03952
[2025-11-27 06:01:40] 2025-11-27 11:00:55,745 | INFO     | chi2: 8.286617142237638
[2025-11-27 06:01:40] 2025-11-27 11:00:55,745 | INFO     | current chi2=8.286617142237638 (change=5.883335780430394 %)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,745 | INFO     | right removable region: 787
[2025-11-27 06:01:40] 2025-11-27 11:00:55,746 | INFO     | sum of square deviations: 154630744581.59146
[2025-11-27 06:01:40] 2025-11-27 11:00:55,756 | INFO     | sum of deviations: 6216418819174.431
[2025-11-27 06:01:40] 2025-11-27 11:00:55,757 | INFO     | mean x: 1764217047.0226986
[2025-11-27 06:01:40] 2025-11-27 11:00:55,757 | INFO     | mean y: 3348367.031525851
[2025-11-27 06:01:40] 2025-11-27 11:00:55,757 | INFO     | intersect: -70921176260.30356
[2025-11-27 06:01:40] 2025-11-27 11:00:55,758 | INFO     | chi2: 10.042479623870786
[2025-11-27 06:01:40] 2025-11-27 11:00:55,758 | INFO     | current chi2=10.042479623870786 (change=17.45719785330291 %)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,758 | INFO     | left removable region: 10
[2025-11-27 06:01:40] 2025-11-27 11:00:55,758 | INFO     | sum of square deviations: 145458931705.1303
[2025-11-27 06:01:40] 2025-11-27 11:00:55,781 | INFO     | sum of deviations: 6413032616165.685
[2025-11-27 06:01:40] 2025-11-27 11:00:55,782 | INFO     | mean x: 1764216864.033462
[2025-11-27 06:01:40] 2025-11-27 11:00:55,782 | INFO     | mean y: 3368934.473616474
[2025-11-27 06:01:40] 2025-11-27 11:00:55,782 | INFO     | intersect: -77777900035.46129
[2025-11-27 06:01:40] 2025-11-27 11:00:55,783 | INFO     | chi2: 6.075602454278454
[2025-11-27 06:01:40] 2025-11-27 11:00:55,783 | INFO     | current memory leak: 44.09 B/s (using 777 data points, chi2=6.08)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | could have reported an average CPU frequency of 3259 MHz (30 samples)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | ..............................
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . Timing measurements:
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . get job = 0 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . initial setup = 2 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . payload setup = 10 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . stage-in = 0 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . payload execution = 48659 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . stage-out = 3 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | . log creation = 0 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,784 | INFO     | ..............................
[2025-11-27 06:01:40] 2025-11-27 11:00:55,859 | INFO     | 
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | job summary report
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | --------------------------------------------------
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | PanDA job id: 6896297149
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | task id: 47556149
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | errors: (none)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | pilot state: finished 
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | transexitcode: 0
[2025-11-27 06:01:40] 2025-11-27 11:00:55,864 | INFO     | exeerrorcode: 0
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | exeerrordiag: 
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | exitcode: 0
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | exitmsg: OK
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | cpuconsumptiontime: 189037 s
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | nevents: 1000
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | neventsw: 0
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | pid: 205684
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | pgrp: 205684
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | corecount: 8
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | event service: False
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | sizes: {0: 2284144, 1: 2284343, 8: 2284605, 11: 2284633, 48675: 2333579, 48678: 2342573, 48679: 2342757, 48689: 2343003}
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | --------------------------------------------------
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | 
[2025-11-27 06:01:40] 2025-11-27 11:00:55,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 06:01:40] 2025-11-27 11:00:55,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,996 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:01:40] 2025-11-27 11:00:55,997 | INFO     | job 6896297149 has completed (purged errors)
[2025-11-27 06:01:40] 2025-11-27 11:00:55,997 | INFO     | overall cleanup function is called
[2025-11-27 06:01:40] 2025-11-27 11:00:57,013 | INFO     | --- collectZombieJob: --- 10, [205684]
[2025-11-27 06:01:40] 2025-11-27 11:00:57,013 | INFO     | zombie collector waiting for pid 205684
[2025-11-27 06:01:40] 2025-11-27 11:00:57,013 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:01:40] 2025-11-27 11:00:57,013 | INFO     | collected zombie processes
[2025-11-27 06:01:40] 2025-11-27 11:00:57,013 | INFO     | will attempt to kill all subprocesses of pid=205684
[2025-11-27 06:01:40] 2025-11-27 11:00:58,229 | INFO     | process IDs to be killed: [205684] (in reverse order)
[2025-11-27 06:01:40] 2025-11-27 11:00:58,461 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:01:40] 2025-11-27 11:00:58,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:01:40] 2025-11-27 11:00:58,494 | INFO     | did not find any defunct processes belonging to 205684
[2025-11-27 06:01:40] 2025-11-27 11:00:58,528 | INFO     | did not find any defunct processes belonging to 205684
[2025-11-27 06:01:40] 2025-11-27 11:00:58,529 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:01:40] 2025-11-27 11:00:58,529 | INFO     | ready for new job
[2025-11-27 06:01:40] 2025-11-27 11:00:58,529 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:01:40] 2025-11-27 11:00:58,532 | INFO     | ***************************************
[2025-11-27 06:01:40] 2025-11-27 11:00:58,533 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:01:40] 2025-11-27 11:00:58,533 | INFO     | ***************************************
[2025-11-27 06:01:40] 2025-11-27 11:00:58,533 | INFO     | 
[2025-11-27 06:01:40] 2025-11-27 11:00:58,537 | INFO     | architecture information:
[2025-11-27 06:01:40] 2025-11-27 11:00:58,538 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:01:40] 2025-11-27 11:00:58,561 | INFO     | cat /etc/os-release:
[2025-11-27 06:01:40] NAME="CentOS Linux"
[2025-11-27 06:01:40] VERSION="7 (Core)"
[2025-11-27 06:01:40] ID="centos"
[2025-11-27 06:01:40] ID_LIKE="rhel fedora"
[2025-11-27 06:01:40] VERSION_ID="7"
[2025-11-27 06:01:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:01:40] ANSI_COLOR="0;31"
[2025-11-27 06:01:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:01:40] HOME_URL="https://www.centos.org/"
[2025-11-27 06:01:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:01:40] 
[2025-11-27 06:01:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:01:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:01:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:01:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:01:40] 
[2025-11-27 06:01:40] 2025-11-27 11:00:58,562 | INFO     | ***************************************
[2025-11-27 06:01:40] 2025-11-27 11:00:59,084 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 06:01:40] 2025-11-27 11:00:59,150 | INFO     | sufficient remaining disk space (117371305984 B)
[2025-11-27 06:01:40] 2025-11-27 11:00:59,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:01:40] 2025-11-27 11:00:59,151 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:01:40] 2025-11-27 11:00:59,151 | INFO     | update_server=False
[2025-11-27 06:01:40] 2025-11-27 11:00:59,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:01:40] 2025-11-27 11:00:59,239 | INFO     | all data control threads have been joined
[2025-11-27 06:01:40] 2025-11-27 11:00:59,941 | INFO     | all payload control threads have been joined
[2025-11-27 06:01:40] 2025-11-27 11:01:00,041 | INFO     | all job control threads have been joined
[2025-11-27 06:01:40] 2025-11-27 11:01:00,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:01:40] 2025-11-27 11:01:00,141 | INFO     | aborting loop
[2025-11-27 06:01:40] 2025-11-27 11:01:00,157 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:00,244 | INFO     | [data] control thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:00,496 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:00,496 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:00,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:01:40] 2025-11-27 11:01:00,682 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:00,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:01:40] 2025-11-27 11:01:00,946 | INFO     | [payload] control thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,047 | INFO     | [job] control thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,149 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,439 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,460 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,459 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,547 | INFO     | [job] validate thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:01,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:01:40] 2025-11-27 11:01:01,892 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:02,524 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:05,606 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:10,035 | INFO     | job.realtimelogging is not enabled
[2025-11-27 06:01:40] 2025-11-27 11:01:11,052 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:01:40] 2025-11-27 11:01:30,000 | INFO     | PID=197241 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 06:01:40] 2025-11-27 11:01:30,003 | INFO     | .. there are 88 such processes running
[2025-11-27 06:01:40] 2025-11-27 11:01:30,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:01:40] 2025-11-27 11:01:30,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:01:40] 2025-11-27 11:01:30,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:01:40] 2025-11-27 11:01:31,868 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:01:40] 2025-11-27 11:01:33,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675830957888)>', '<ExcThread(monitor, started 140675202934528)>']
[2025-11-27 06:01:40] 2025-11-27 11:01:34,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:01:40] 2025-11-27 11:01:34,039 | INFO     | [monitor] control thread has ended
[2025-11-27 06:01:40] 2025-11-27 11:01:38,848 | INFO     | all workflow threads have been joined
[2025-11-27 06:01:40] 2025-11-27 11:01:38,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:01:40] 2025-11-27 11:01:38,848 | INFO     | traces error code: 0
[2025-11-27 06:01:40] 2025-11-27 11:01:38,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:01:40] 2025-11-27 11:01:39,287 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:01:40] 2025-11-27 11:01:39,306 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:01:40] 2025-11-27 11:01:39,308 [wrapper] pilotpid: 197241
[2025-11-27 06:01:40] 2025-11-27 11:01:39,311 [wrapper] Pilot exit status: 0
[2025-11-27 06:01:40] 2025-11-27 11:01:39,327 [wrapper] pandaids: 6896297149
[2025-11-27 06:01:40] 2025-11-27 11:01:39,500 [wrapper] cleanup supervisor_pilot 3014147 197242
[2025-11-27 06:01:40] 2025-11-27 11:01:39,506 [wrapper] Test setup, not cleaning
[2025-11-27 06:01:40] 2025-11-27 11:01:39,535 [wrapper] apfmon messages muted
[2025-11-27 06:01:40] 2025-11-27 11:01:39,539 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:01:40] 2025-11-27 11:01:39,544 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:01:40]  *** Error codes and diagnostics ***
[2025-11-27 06:01:40]     "exeErrorCode": 0,
[2025-11-27 06:01:40]     "exeErrorDiag": "",
[2025-11-27 06:01:40]     "pilotErrorCode": 0,
[2025-11-27 06:01:40]     "pilotErrorDiag": "",
[2025-11-27 06:01:40]  *** Listing of results directory ***
[2025-11-27 06:01:40] total 1308036
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 19:45 queuedata.json
[2025-11-27 06:01:40] -rwx------. 1 boincer umatlas     36292 Nov 24 19:48 runpilot2-wrapper.sh
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:01:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:28 run_atlas
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:28 job.xml
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas 409819081 Nov 26 16:28 EVNT.47483658._001459.pool.root.1
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 16:28 input.tar.gz
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:28 start_atlas.sh
[2025-11-27 06:01:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:28 shared
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:28 boinc_lockfile
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:28 pandaJob.out
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas        57 Nov 26 16:28 setup.sh.local
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas    991538 Nov 26 16:29 agis_schedconf.cvmfs.json
[2025-11-27 06:01:40] drwx------. 5 boincer umatlas      4096 Nov 26 16:29 pilot3
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:51 boinc_task_state.xml
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 05:54 init_data.xml
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas 908648562 Nov 27 06:00 HITS.47556149._004456.pool.root.1
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas      1074 Nov 27 06:00 memory_monitor_summary.json
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas   2015933 Nov 27 06:00 log.47556149._004456.job.log.tgz.1
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas        95 Nov 27 06:00 pilot_heartbeat.json
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas      8636 Nov 27 06:00 heartbeat.json
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:01 boinc_mmap_file
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:01 wrapper_checkpoint.txt
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas      4896 Nov 27 06:01 pilotlog.txt
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas   6506140 Nov 27 06:01 log.47556149._004456.job.log.1
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas       353 Nov 27 06:01 output.list
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:01 runtime_log
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas   8540160 Nov 27 06:01 result.tar.gz
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas       665 Nov 27 06:01 vQDNDmLPwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2FJKDmfEzpDm.diag
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 06:01 runtime_log.err
[2025-11-27 06:01:40] -rw-r--r--. 1 boincer umatlas     15578 Nov 27 06:01 stderr.txt
[2025-11-27 06:01:40] HITS file was successfully produced:
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas 908648562 Nov 27 06:00 shared/HITS.pool.root.1
[2025-11-27 06:01:40]  *** Contents of shared directory: ***
[2025-11-27 06:01:40] total 1296516
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas 409819081 Nov 26 16:28 ATLAS.root_0
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 16:28 input.tar.gz
[2025-11-27 06:01:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:28 start_atlas.sh
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas 908648562 Nov 27 06:00 HITS.pool.root.1
[2025-11-27 06:01:40] -rw-------. 1 boincer umatlas   8540160 Nov 27 06:01 result.tar.gz
06:01:41 (193327): run_atlas exited; CPU time 190099.173753
06:01:41 (193327): called boinc_finish(0)

</stderr_txt>
]]>

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