Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:40 (2013162): wrapper (7.7.26015): starting
21:50:40 (2013162): wrapper: running run_atlas (--nthreads 3)
[2025-11-29 21:50:40] Arguments: --nthreads 3
[2025-11-29 21:50:40] Threads: 3
[2025-11-29 21:50:40] Checking for CVMFS
[2025-11-29 21:50:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 21:50:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 21:50:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 21:50:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 21:50:40] 2.9.2.0 1572593 3321 80400 153455 0 81 34696629 36864001 0 130560 0 1217108 99.980 120107 4555 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 21:50:40] CVMFS is ok
[2025-11-29 21:50:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 21:50:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 21:50:40] Further information can be found at the LHC@home message board.
[2025-11-29 21:50:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 21:50:40] Checking for apptainer binary...
[2025-11-29 21:50:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 21:50:40] Running /usr/bin/apptainer --version
[2025-11-29 21:50:40] apptainer version 1.4.1-1.1
[2025-11-29 21:50:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 21:50:40] thA385
[2025-11-29 21:50:40] apptainer works
[2025-11-29 21:50:40] Set ATHENA_PROC_NUMBER=3
[2025-11-29 21:50:40] Set ATHENA_CORE_NUMBER=3
[2025-11-29 21:50:40] Starting ATLAS job with PandaID=6896922968
[2025-11-29 21:50:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 05:56:27]  *** The last 200 lines of the pilot log: ***
[2025-11-30 05:56:27] 2025-11-30 04:55:31,114 | INFO     | collected zombie processes
[2025-11-30 05:56:27] 2025-11-30 04:55:31,114 | INFO     | will attempt to kill all subprocesses of pid=2023331
[2025-11-30 05:56:27] 2025-11-30 04:55:31,157 | INFO     | process IDs to be killed: [2023331] (in reverse order)
[2025-11-30 05:56:27] 2025-11-30 04:55:31,183 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 05:56:27] 2025-11-30 04:55:31,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 05:56:27] 2025-11-30 04:55:31,185 | INFO     | did not find any defunct processes belonging to 2023331
[2025-11-30 05:56:27] 2025-11-30 04:55:31,186 | INFO     | did not find any defunct processes belonging to 2023331
[2025-11-30 05:56:27] 2025-11-30 04:55:31,186 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 05:56:27] 2025-11-30 04:55:31,186 | INFO     | ready for new job
[2025-11-30 05:56:27] 2025-11-30 04:55:31,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | ***************************************
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | ***************************************
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | 
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | architecture information:
[2025-11-30 05:56:27] 2025-11-30 04:55:31,188 | INFO     | executing command: cat /etc/os-release
[2025-11-30 05:56:27] 2025-11-30 04:55:31,198 | INFO     | cat /etc/os-release:
[2025-11-30 05:56:27] NAME="CentOS Linux"
[2025-11-30 05:56:27] VERSION="7 (Core)"
[2025-11-30 05:56:27] ID="centos"
[2025-11-30 05:56:27] ID_LIKE="rhel fedora"
[2025-11-30 05:56:27] VERSION_ID="7"
[2025-11-30 05:56:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 05:56:27] ANSI_COLOR="0;31"
[2025-11-30 05:56:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 05:56:27] HOME_URL="https://www.centos.org/"
[2025-11-30 05:56:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 05:56:27] 
[2025-11-30 05:56:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 05:56:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 05:56:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 05:56:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 05:56:27] 
[2025-11-30 05:56:27] 2025-11-30 04:55:31,198 | INFO     | ***************************************
[2025-11-30 05:56:27] 2025-11-30 04:55:31,701 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | INFO     | sufficient remaining disk space (366735261696 B)
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | INFO     | update_server=False
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 05:56:27] 2025-11-30 04:55:31,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:56:27] 2025-11-30 04:55:32,105 | INFO     | all data control threads have been joined
[2025-11-30 05:56:27] 2025-11-30 04:55:32,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 05:56:27] 2025-11-30 04:55:32,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:56:27] 2025-11-30 04:55:32,622 | INFO     | aborting loop
[2025-11-30 05:56:27] 2025-11-30 04:55:32,647 | INFO     | all payload control threads have been joined
[2025-11-30 05:56:27] 2025-11-30 04:55:32,720 | INFO     | [job] retrieve thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:32,721 | INFO     | [job] queue monitor thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:32,851 | INFO     | all job control threads have been joined
[2025-11-30 05:56:27] 2025-11-30 04:55:33,111 | INFO     | [data] control thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,169 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,346 | INFO     | [payload] failed_post thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,348 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,366 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,420 | INFO     | [data] copytool_in thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 05:56:27] 2025-11-30 04:55:33,627 | INFO     | [job] job monitor thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,653 | INFO     | [payload] control thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,812 | INFO     | [payload] validate_post thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,857 | INFO     | [job] control thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:33,954 | INFO     | [job] validate thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:34,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:34,251 | INFO     | [data] copytool_out thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:55:37,441 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 05:56:27] 2025-11-30 04:56:02,125 | INFO     | PID=2016882 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 05:56:27] 2025-11-30 04:56:02,125 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 05:56:27] 2025-11-30 04:56:02,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 05:56:27] 2025-11-30 04:56:02,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 05:56:27] 2025-11-30 04:56:21,357 | INFO     | [monitor] cgroup control has ended
[2025-11-30 05:56:27] 2025-11-30 04:56:22,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630461372224)>', '<ExcThread(monitor, started 139629965592320)>']
[2025-11-30 05:56:27] 2025-11-30 04:56:23,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 05:56:27] 2025-11-30 04:56:23,238 | INFO     | [monitor] control thread has ended
[2025-11-30 05:56:27] 2025-11-30 04:56:27,767 | INFO     | all workflow threads have been joined
[2025-11-30 05:56:27] 2025-11-30 04:56:27,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 05:56:27] 2025-11-30 04:56:27,768 | INFO     | traces error code: 0
[2025-11-30 05:56:27] 2025-11-30 04:56:27,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 05:56:27] 2025-11-30 04:56:27,818 [wrapper] ==== pilot stdout END ====
[2025-11-30 05:56:27] 2025-11-30 04:56:27,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 05:56:27] 2025-11-30 04:56:27,823 [wrapper] pilotpid: 2016882
[2025-11-30 05:56:27] 2025-11-30 04:56:27,826 [wrapper] Pilot exit status: 0
[2025-11-30 05:56:27] 2025-11-30 04:56:27,833 [wrapper] pandaids: 6896922968
[2025-11-30 05:56:27] 2025-11-30 04:56:27,851 [wrapper] cleanup supervisor_pilot 2075626 2016883
[2025-11-30 05:56:27] 2025-11-30 04:56:27,854 [wrapper] Test setup, not cleaning
[2025-11-30 05:56:27] 2025-11-30 04:56:27,856 [wrapper] apfmon messages muted
[2025-11-30 05:56:27] 2025-11-30 04:56:27,859 [wrapper] ==== wrapper stdout END ====
[2025-11-30 05:56:27] 2025-11-30 04:56:27,861 [wrapper] ==== wrapper stderr END ====
[2025-11-30 05:56:27]  *** Error codes and diagnostics ***
[2025-11-30 05:56:27]     "exeErrorCode": 0,
[2025-11-30 05:56:27]     "exeErrorDiag": "",
[2025-11-30 05:56:27]     "pilotErrorCode": 0,
[2025-11-30 05:56:27]     "pilotErrorDiag": "",
[2025-11-30 05:56:27]  *** Listing of results directory ***
[2025-11-30 05:56:27] total 1324152
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc      5112 Nov 25 12:19 queuedata.json
[2025-11-30 05:56:27] -rwx------ 1 boinc boinc     36292 Nov 25 12:20 runpilot2-wrapper.sh
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc       100 Nov 29 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 05:56:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 21:50 run_atlas
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc       105 Nov 29 21:50 job.xml
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc 413930896 Nov 29 21:50 EVNT.47483658._002146.pool.root.1
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc    590101 Nov 29 21:50 input.tar.gz
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc     15847 Nov 29 21:50 start_atlas.sh
[2025-11-30 05:56:27] drwxrwx--x 2 boinc boinc      4096 Nov 29 21:50 shared
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc         0 Nov 29 21:50 boinc_setup_complete
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc      6447 Nov 29 21:50 init_data.xml
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc         0 Nov 29 21:50 boinc_lockfile
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc      2784 Nov 29 21:50 pandaJob.out
[2025-11-30 05:56:27] -rw------- 1 boinc boinc    991826 Nov 29 21:50 agis_schedconf.cvmfs.json
[2025-11-30 05:56:27] drwx------ 5 boinc boinc      4096 Nov 29 21:50 pilot3
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc       531 Nov 30 05:51 boinc_task_state.xml
[2025-11-30 05:56:27] -rw------- 1 boinc boinc 927555879 Nov 30 05:55 HITS.47556161._001300.pool.root.1
[2025-11-30 05:56:27] -rw------- 1 boinc boinc        95 Nov 30 05:55 pilot_heartbeat.json
[2025-11-30 05:56:27] -rw------- 1 boinc boinc      1042 Nov 30 05:55 memory_monitor_summary.json
[2025-11-30 05:56:27] -rw------- 1 boinc boinc   1516240 Nov 30 05:55 agis_ddmendpoints.agis.ALL.json
[2025-11-30 05:56:27] -rw------- 1 boinc boinc   1171472 Nov 30 05:55 log.47556161._001300.job.log.tgz.1
[2025-11-30 05:56:27] -rw------- 1 boinc boinc      8574 Nov 30 05:55 heartbeat.json
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc      8192 Nov 30 05:56 boinc_mmap_file
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc        28 Nov 30 05:56 wrapper_checkpoint.txt
[2025-11-30 05:56:27] -rw------- 1 boinc boinc      4752 Nov 30 05:56 pilotlog.txt
[2025-11-30 05:56:27] -rw------- 1 boinc boinc   4096424 Nov 30 05:56 log.47556161._001300.job.log.1
[2025-11-30 05:56:27] -rw------- 1 boinc boinc       353 Nov 30 05:56 output.list
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc       620 Nov 30 05:56 runtime_log
[2025-11-30 05:56:27] -rw------- 1 boinc boinc   5283840 Nov 30 05:56 result.tar.gz
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc      8898 Nov 30 05:56 runtime_log.err
[2025-11-30 05:56:27] -rw------- 1 boinc boinc       665 Nov 30 05:56 IFmMDmPH6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHLMKDmWi8XBn.diag
[2025-11-30 05:56:27] -rw-r--r-- 1 boinc boinc     10505 Nov 30 05:56 stderr.txt
[2025-11-30 05:56:27] HITS file was successfully produced:
[2025-11-30 05:56:27] -rw------- 1 boinc boinc 927555879 Nov 30 05:55 shared/HITS.pool.root.1
[2025-11-30 05:56:27]  *** Contents of shared directory: ***
[2025-11-30 05:56:27] total 1315816
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc 413930896 Nov 29 21:50 ATLAS.root_0
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc    590101 Nov 29 21:50 input.tar.gz
[2025-11-30 05:56:27] -rw-r--r-- 2 boinc boinc     15847 Nov 29 21:50 start_atlas.sh
[2025-11-30 05:56:27] -rw------- 1 boinc boinc 927555879 Nov 30 05:55 HITS.pool.root.1
[2025-11-30 05:56:27] -rw------- 1 boinc boinc   5283840 Nov 30 05:56 result.tar.gz
05:56:29 (2013162): run_atlas exited; CPU time 85874.521056
05:56:29 (2013162): called boinc_finish(0)

</stderr_txt>
]]>

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