Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:16:22 (15371): wrapper (7.7.26015): starting
16:16:22 (15371): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:16:22] Arguments: --nthreads 8
[2025-11-26 16:16:22] Threads: 8
[2025-11-26 16:16:22] Checking for CVMFS
[2025-11-26 16:16:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:16:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:16:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:16:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:16:23] 2.11.2.0 5524 118212 141332 153335 2 59 15725174 18432001 1885 130560 0 86416540 99.975 5008509 32742 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:16:23] CVMFS is ok
[2025-11-26 16:16:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:16:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:16:23] Further information can be found at the LHC@home message board.
[2025-11-26 16:16:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:16:23] Checking for apptainer binary...
[2025-11-26 16:16:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:16:23] Running /usr/bin/apptainer --version
[2025-11-26 16:16:23] apptainer version 1.3.2-1.el7
[2025-11-26 16:16:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:16:23] c-206-5.aglt2.org
[2025-11-26 16:16:23] apptainer works
[2025-11-26 16:16:23] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:16:23] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:16:23] Starting ATLAS job with PandaID=6896990067
[2025-11-26 16:16:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:46:26 (6336): wrapper (7.7.26015): starting
07:46:26 (6336): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:46:26] Arguments: --nthreads 8
[2025-11-27 07:46:26] Threads: 8
[2025-11-27 07:46:26] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:46:26] Checking for CVMFS
[2025-11-27 07:46:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:46:27] 2.11.2.0 5524 119143 135032 153364 1 56 15952119 18432001 1 130560 0 87266495 99.975 5046760 32763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:46:27] CVMFS is ok
[2025-11-27 07:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:46:27] Further information can be found at the LHC@home message board.
[2025-11-27 07:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:46:27] Checking for apptainer binary...
[2025-11-27 07:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:46:27] Running /usr/bin/apptainer --version
[2025-11-27 07:46:27] apptainer version 1.3.2-1.el7
[2025-11-27 07:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:46:28] c-206-5.aglt2.org
[2025-11-27 07:46:28] apptainer works
[2025-11-27 07:46:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:46:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:46:28] Starting ATLAS job with PandaID=6896990067
[2025-11-27 07:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:25:44]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:25:44] 2025-11-28 08:24:44,582 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 03:25:44] 2025-11-28 08:24:44,588 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2566.6666666666665
[2025-11-28 03:25:44] 2025-11-28 08:24:44,593 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896990067/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,594 | INFO     | extracted standard info from prmon json
[2025-11-28 03:25:44] 2025-11-28 08:24:44,594 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:25:44] 2025-11-28 08:24:44,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:25:44] 2025-11-28 08:24:44,625 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:25:44] 2025-11-28 08:24:44,627 | INFO     | sum of square deviations: 482755411848.09283
[2025-11-28 03:25:44] 2025-11-28 08:24:44,673 | INFO     | sum of deviations: 2127377822792.412
[2025-11-28 03:25:44] 2025-11-28 08:24:44,673 | INFO     | mean x: 1764282947.8075929
[2025-11-28 03:25:44] 2025-11-28 08:24:44,674 | INFO     | mean y: 2870129.2260569455
[2025-11-28 03:25:44] 2025-11-28 08:24:44,674 | INFO     | intersect: -7771866982.323372
[2025-11-28 03:25:44] 2025-11-28 08:24:44,676 | INFO     | chi2: 6.050052942817958
[2025-11-28 03:25:44] 2025-11-28 08:24:44,677 | INFO     | sum of square deviations: 476534678357.318
[2025-11-28 03:25:44] 2025-11-28 08:24:44,723 | INFO     | sum of deviations: 2496401718432.711
[2025-11-28 03:25:44] 2025-11-28 08:24:44,724 | INFO     | mean x: 1764282795.311092
[2025-11-28 03:25:44] 2025-11-28 08:24:44,724 | INFO     | mean y: 2879171.9757365687
[2025-11-28 03:25:44] 2025-11-28 08:24:44,724 | INFO     | intersect: -9239593206.316479
[2025-11-28 03:25:44] 2025-11-28 08:24:44,726 | INFO     | chi2: 3.1266760416589503
[2025-11-28 03:25:44] 2025-11-28 08:24:44,726 | INFO     | current chi2=3.1266760416589503 (change=48.31985651678239 %)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,728 | INFO     | sum of square deviations: 470367620291.5144
[2025-11-28 03:25:44] 2025-11-28 08:24:44,773 | INFO     | sum of deviations: 2652075566997.7974
[2025-11-28 03:25:44] 2025-11-28 08:24:44,773 | INFO     | mean x: 1764282642.8146214
[2025-11-28 03:25:44] 2025-11-28 08:24:44,773 | INFO     | mean y: 2883018.9286335944
[2025-11-28 03:25:44] 2025-11-28 08:24:44,774 | INFO     | intersect: -9944678608.2665
[2025-11-28 03:25:44] 2025-11-28 08:24:44,775 | INFO     | chi2: 2.4775969334506103
[2025-11-28 03:25:44] 2025-11-28 08:24:44,775 | INFO     | current chi2=2.4775969334506103 (change=20.759397505855834 %)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,776 | INFO     | right removable region: 1148
[2025-11-28 03:25:44] 2025-11-28 08:24:44,777 | INFO     | sum of square deviations: 476534177852.9394
[2025-11-28 03:25:44] 2025-11-28 08:24:44,825 | INFO     | sum of deviations: 1842392212535.982
[2025-11-28 03:25:44] 2025-11-28 08:24:44,825 | INFO     | mean x: 1764283100.3102252
[2025-11-28 03:25:44] 2025-11-28 08:24:44,825 | INFO     | mean y: 2877105.874350087
[2025-11-28 03:25:44] 2025-11-28 08:24:44,826 | INFO     | intersect: -6818252617.424357
[2025-11-28 03:25:44] 2025-11-28 08:24:44,827 | INFO     | chi2: 4.080217116020815
[2025-11-28 03:25:44] 2025-11-28 08:24:44,827 | INFO     | current chi2=4.080217116020815 (change=32.558984944677924 %)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,829 | INFO     | sum of square deviations: 470366830466.63855
[2025-11-28 03:25:44] 2025-11-28 08:24:44,874 | INFO     | sum of deviations: 1751523605993.1707
[2025-11-28 03:25:44] 2025-11-28 08:24:44,875 | INFO     | mean x: 1764283252.8102698
[2025-11-28 03:25:44] 2025-11-28 08:24:44,875 | INFO     | mean y: 2879352.358572672
[2025-11-28 03:25:44] 2025-11-28 08:24:44,875 | INFO     | intersect: -6566852109.976717
[2025-11-28 03:25:44] 2025-11-28 08:24:44,877 | INFO     | chi2: 3.990689572315476
[2025-11-28 03:25:44] 2025-11-28 08:24:44,877 | INFO     | current chi2=3.990689572315476 (change=2.194185778835466 %)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,877 | INFO     | left removable region: 20
[2025-11-28 03:25:44] 2025-11-28 08:24:44,879 | INFO     | sum of square deviations: 445045487126.7441
[2025-11-28 03:25:44] 2025-11-28 08:24:44,923 | INFO     | sum of deviations: 2169844589931.1438
[2025-11-28 03:25:44] 2025-11-28 08:24:44,923 | INFO     | mean x: 1764283222.3182623
[2025-11-28 03:25:44] 2025-11-28 08:24:44,923 | INFO     | mean y: 2896183.9104609927
[2025-11-28 03:25:44] 2025-11-28 08:24:44,924 | INFO     | intersect: -8598967031.845127
[2025-11-28 03:25:44] 2025-11-28 08:24:44,925 | INFO     | chi2: 0.29153853382234485
[2025-11-28 03:25:44] 2025-11-28 08:24:44,925 | INFO     | current memory leak: 4.88 B/s (using 1128 data points, chi2=0.29)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,927 | INFO     | could have reported an average CPU frequency of 2579 MHz (42 samples)
[2025-11-28 03:25:44] 2025-11-28 08:24:44,927 | INFO     | ..............................
[2025-11-28 03:25:44] 2025-11-28 08:24:44,927 | INFO     | . Timing measurements:
[2025-11-28 03:25:44] 2025-11-28 08:24:44,927 | INFO     | . get job = 0 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,927 | INFO     | . initial setup = 2 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | . payload setup = 6 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | . stage-in = 0 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | . payload execution = 70644 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | . stage-out = 4 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | . log creation = 0 s
[2025-11-28 03:25:44] 2025-11-28 08:24:44,928 | INFO     | ..............................
[2025-11-28 03:25:44] 2025-11-28 08:24:45,088 | INFO     | 
[2025-11-28 03:25:44] 2025-11-28 08:24:45,088 | INFO     | job summary report
[2025-11-28 03:25:44] 2025-11-28 08:24:45,088 | INFO     | --------------------------------------------------
[2025-11-28 03:25:44] 2025-11-28 08:24:45,088 | INFO     | PanDA job id: 6896990067
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | task id: 47556161
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | errors: (none)
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | pilot state: finished 
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | transexitcode: 0
[2025-11-28 03:25:44] 2025-11-28 08:24:45,089 | INFO     | exeerrorcode: 0
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | exeerrordiag: 
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | exitcode: 0
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | exitmsg: OK
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | cpuconsumptiontime: 543403 s
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | nevents: 1000
[2025-11-28 03:25:44] 2025-11-28 08:24:45,090 | INFO     | neventsw: 0
[2025-11-28 03:25:44] 2025-11-28 08:24:45,091 | INFO     | pid: 5359
[2025-11-28 03:25:44] 2025-11-28 08:24:45,091 | INFO     | pgrp: 5359
[2025-11-28 03:25:44] 2025-11-28 08:24:45,091 | INFO     | corecount: 8
[2025-11-28 03:25:44] 2025-11-28 08:24:45,091 | INFO     | event service: False
[2025-11-28 03:25:44] 2025-11-28 08:24:45,091 | INFO     | sizes: {0: 2284263, 4: 2284525, 11: 2284553, 70655: 2341265, 70660: 2350259, 70662: 2350315, 70668: 2350689}
[2025-11-28 03:25:44] 2025-11-28 08:24:45,092 | INFO     | --------------------------------------------------
[2025-11-28 03:25:44] 2025-11-28 08:24:45,092 | INFO     | 
[2025-11-28 03:25:44] 2025-11-28 08:24:45,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 03:25:44] 2025-11-28 08:24:45,112 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,112 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,112 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,112 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:25:44] 2025-11-28 08:24:45,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,115 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:25:44] 2025-11-28 08:24:45,115 | INFO     | job 6896990067 has completed (purged errors)
[2025-11-28 03:25:44] 2025-11-28 08:24:45,116 | INFO     | overall cleanup function is called
[2025-11-28 03:25:44] 2025-11-28 08:24:46,132 | INFO     | --- collectZombieJob: --- 10, [5359]
[2025-11-28 03:25:44] 2025-11-28 08:24:46,133 | INFO     | zombie collector waiting for pid 5359
[2025-11-28 03:25:44] 2025-11-28 08:24:46,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:25:44] 2025-11-28 08:24:46,133 | INFO     | collected zombie processes
[2025-11-28 03:25:44] 2025-11-28 08:24:46,133 | INFO     | will attempt to kill all subprocesses of pid=5359
[2025-11-28 03:25:44] 2025-11-28 08:24:46,299 | INFO     | process IDs to be killed: [5359] (in reverse order)
[2025-11-28 03:25:44] 2025-11-28 08:24:46,363 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:25:44] 2025-11-28 08:24:46,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:25:44] 2025-11-28 08:24:46,366 | INFO     | did not find any defunct processes belonging to 5359
[2025-11-28 03:25:44] 2025-11-28 08:24:46,369 | INFO     | did not find any defunct processes belonging to 5359
[2025-11-28 03:25:44] 2025-11-28 08:24:46,370 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:25:44] 2025-11-28 08:24:46,370 | INFO     | ready for new job
[2025-11-28 03:25:44] 2025-11-28 08:24:46,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:25:44] 2025-11-28 08:24:46,374 | INFO     | ***************************************
[2025-11-28 03:25:44] 2025-11-28 08:24:46,374 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:25:44] 2025-11-28 08:24:46,374 | INFO     | ***************************************
[2025-11-28 03:25:44] 2025-11-28 08:24:46,374 | INFO     | 
[2025-11-28 03:25:44] 2025-11-28 08:24:46,375 | INFO     | architecture information:
[2025-11-28 03:25:44] 2025-11-28 08:24:46,376 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:25:44] 2025-11-28 08:24:46,388 | INFO     | cat /etc/os-release:
[2025-11-28 03:25:44] NAME="CentOS Linux"
[2025-11-28 03:25:44] VERSION="7 (Core)"
[2025-11-28 03:25:44] ID="centos"
[2025-11-28 03:25:44] ID_LIKE="rhel fedora"
[2025-11-28 03:25:44] VERSION_ID="7"
[2025-11-28 03:25:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:25:44] ANSI_COLOR="0;31"
[2025-11-28 03:25:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:25:44] HOME_URL="https://www.centos.org/"
[2025-11-28 03:25:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:25:44] 
[2025-11-28 03:25:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:25:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:25:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:25:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:25:44] 
[2025-11-28 03:25:44] 2025-11-28 08:24:46,388 | INFO     | ***************************************
[2025-11-28 03:25:44] 2025-11-28 08:24:46,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 03:25:44] 2025-11-28 08:24:46,911 | INFO     | sufficient remaining disk space (25434259456 B)
[2025-11-28 03:25:44] 2025-11-28 08:24:46,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:25:44] 2025-11-28 08:24:46,912 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:25:44] 2025-11-28 08:24:46,912 | INFO     | update_server=False
[2025-11-28 03:25:44] 2025-11-28 08:24:46,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:25:44] 2025-11-28 08:24:46,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:25:44] 2025-11-28 08:24:47,008 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 03:25:44] 2025-11-28 08:24:47,008 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 03:25:44] 2025-11-28 08:24:47,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:25:44] 2025-11-28 08:24:47,008 | INFO     | will abort loop
[2025-11-28 03:25:44] 2025-11-28 08:24:47,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:25:44] 2025-11-28 08:24:47,340 | INFO     | all data control threads have been joined
[2025-11-28 03:25:44] 2025-11-28 08:24:47,918 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:47,918 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,013 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,068 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,318 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,329 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,343 | INFO     | [data] control thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,367 | INFO     | all payload control threads have been joined
[2025-11-28 03:25:44] 2025-11-28 08:24:48,560 | INFO     | all job control threads have been joined
[2025-11-28 03:25:44] 2025-11-28 08:24:48,664 | INFO     | [job] validate thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:48,963 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,104 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,261 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,324 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,373 | INFO     | [payload] control thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,565 | INFO     | [job] control thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:49,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:25:44] 2025-11-28 08:24:53,803 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:24:57,350 | INFO     | job.realtimelogging is not enabled
[2025-11-28 03:25:44] 2025-11-28 08:24:58,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:25:44] 2025-11-28 08:25:17,788 | INFO     | PID=18464 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:25:44] 2025-11-28 08:25:17,788 | INFO     | .. there are 3 such processes running
[2025-11-28 03:25:44] 2025-11-28 08:25:17,789 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:25:44] 2025-11-28 08:25:17,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:25:44] 2025-11-28 08:25:17,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:25:44] 2025-11-28 08:25:38,633 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:25:44] 2025-11-28 08:25:39,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072378427200)>', '<ExcThread(monitor, started 140071390914304)>']
[2025-11-28 03:25:44] 2025-11-28 08:25:39,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:25:44] 2025-11-28 08:25:39,905 | INFO     | [monitor] control thread has ended
[2025-11-28 03:25:44] 2025-11-28 08:25:44,277 | INFO     | all workflow threads have been joined
[2025-11-28 03:25:44] 2025-11-28 08:25:44,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:25:44] 2025-11-28 08:25:44,277 | INFO     | traces error code: 0
[2025-11-28 03:25:44] 2025-11-28 08:25:44,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:25:44] 2025-11-28 08:25:44,383 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:25:44] 2025-11-28 08:25:44,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:25:44] 2025-11-28 08:25:44,388 [wrapper] pilotpid: 18464
[2025-11-28 03:25:44] 2025-11-28 08:25:44,391 [wrapper] Pilot exit status: 0
[2025-11-28 03:25:44] 2025-11-28 08:25:44,399 [wrapper] pandaids: 6896990067 6896990067
[2025-11-28 03:25:44] 2025-11-28 08:25:44,437 [wrapper] cleanup supervisor_pilot 23892 18466
[2025-11-28 03:25:44] 2025-11-28 08:25:44,439 [wrapper] Test setup, not cleaning
[2025-11-28 03:25:44] 2025-11-28 08:25:44,442 [wrapper] apfmon messages muted
[2025-11-28 03:25:44] 2025-11-28 08:25:44,444 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:25:44] 2025-11-28 08:25:44,446 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:25:44]  *** Error codes and diagnostics ***
[2025-11-28 03:25:44]     "exeErrorCode": 0,
[2025-11-28 03:25:44]     "exeErrorDiag": "",
[2025-11-28 03:25:44]     "pilotErrorCode": 0,
[2025-11-28 03:25:44]     "pilotErrorDiag": "",
[2025-11-28 03:25:44]  *** Listing of results directory ***
[2025-11-28 03:25:44] total 1736348
[2025-11-28 03:25:44] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 07:49 pilot3.tar.gz
[2025-11-28 03:25:44] -rwx------ 1 boincer umatlas     36292 Nov 25 08:04 runpilot2-wrapper.sh
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 08:04 queuedata.json
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas       100 Nov 26 16:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:25:44] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 16:16 run_atlas
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas       105 Nov 26 16:16 job.xml
[2025-11-28 03:25:44] -rw-r--r-- 3 boincer umatlas 411082925 Nov 26 16:16 EVNT.47483658._002167.pool.root.1
[2025-11-28 03:25:44] -rw-r--r-- 3 boincer umatlas 411082925 Nov 26 16:16 ATLAS.root_0
[2025-11-28 03:25:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:16 start_atlas.sh
[2025-11-28 03:25:44] drwxrwx--x 2 boincer umatlas      4096 Nov 26 16:16 shared
[2025-11-28 03:25:44] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 16:16 input.tar.gz
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas         0 Nov 26 16:16 boinc_lockfile
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 07:46 pandaJob.out
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas        57 Nov 27 07:46 setup.sh.local
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas    991566 Nov 27 07:46 agis_schedconf.cvmfs.json
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas       534 Nov 28 03:10 boinc_task_state.xml
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 03:22 init_data.xml
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas 927730278 Nov 28 03:23 HITS.47556161._001507.pool.root.1
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas      1064 Nov 28 03:24 memory_monitor_summary.json
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas   1516240 Nov 28 03:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas   2321527 Nov 28 03:24 log.47556161._001507.job.log.tgz.1
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas      8672 Nov 28 03:24 heartbeat.json
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas        96 Nov 28 03:25 pilot_heartbeat.json
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 03:25 boinc_mmap_file
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas        30 Nov 28 03:25 wrapper_checkpoint.txt
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas      5079 Nov 28 03:25 pilotlog.txt
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas   9773974 Nov 28 03:25 log.47556161._001507.job.log.1
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas       353 Nov 28 03:25 output.list
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas       620 Nov 28 03:25 runtime_log
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas  12113920 Nov 28 03:25 result.tar.gz
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas      9423 Nov 28 03:25 runtime_log.err
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas       792 Nov 28 03:25 BnrMDmut7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGOMKDm7B5nrm.diag
[2025-11-28 03:25:44] -rw-r--r-- 1 boincer umatlas     23381 Nov 28 03:25 stderr.txt
[2025-11-28 03:25:44] HITS file was successfully produced:
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas 927730278 Nov 28 03:23 shared/HITS.pool.root.1
[2025-11-28 03:25:44]  *** Contents of shared directory: ***
[2025-11-28 03:25:44] total 1319876
[2025-11-28 03:25:44] -rw-r--r-- 3 boincer umatlas 411082925 Nov 26 16:16 ATLAS.root_0
[2025-11-28 03:25:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:16 start_atlas.sh
[2025-11-28 03:25:44] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 16:16 input.tar.gz
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas 927730278 Nov 28 03:23 HITS.pool.root.1
[2025-11-28 03:25:44] -rw------- 1 boincer umatlas  12113920 Nov 28 03:25 result.tar.gz
03:25:46 (6336): run_atlas exited; CPU time 542096.557242
03:25:46 (6336): called boinc_finish(0)

</stderr_txt>
]]>

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