Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:36:46 (25887): wrapper (7.7.26015): starting
01:36:46 (25887): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:36:46] Arguments: --nthreads 8
[2025-11-27 01:36:46] Threads: 8
[2025-11-27 01:36:46] Checking for CVMFS
[2025-11-27 01:36:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:36:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:36:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:36:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:36:46] 2.11.0.0 4256 66878 117036 153341 1 90 3692878 4096000 1939 130560 1 3824959 99.321 5561629 586 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:36:46] CVMFS is ok
[2025-11-27 01:36:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:36:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:36:46] Further information can be found at the LHC@home message board.
[2025-11-27 01:36:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:36:46] Checking for apptainer binary...
[2025-11-27 01:36:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:36:46] apptainer is not installed, using version from CVMFS
[2025-11-27 01:36:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:36:47] WARNING: Environment variable TMPDIR already has value [/tmp/job_10928097/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node198
[2025-11-27 01:36:47] apptainer works
[2025-11-27 01:36:47] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:36:47] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:36:47] Starting ATLAS job with PandaID=6896988843
[2025-11-27 01:36:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10928097/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:02:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:02:30] 2025-11-27 05:01:57,366 | INFO     | time since job start (15906s) is within the limit (172800.0s)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,800 | INFO     | monitor loop #1168: job 0:6896988843 is in state 'finished'
[2025-11-27 06:02:30] 2025-11-27 05:01:57,801 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:02:30] 2025-11-27 05:01:57,874 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2421.572046875
[2025-11-27 06:02:30] 2025-11-27 05:01:57,879 | INFO     | using path: /tmp/job_10928097/atlas/pilot/slots/0/PanDA_Pilot-6896988843/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,880 | INFO     | extracted standard info from prmon json
[2025-11-27 06:02:30] 2025-11-27 05:01:57,880 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:02:30] 2025-11-27 05:01:57,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:02:30] 2025-11-27 05:01:57,882 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:02:30] 2025-11-27 05:01:57,883 | INFO     | sum of square deviations: 5513070810.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | sum of deviations: 118429758816.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | mean x: 1764211759.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | mean y: 2896816.398467433
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | intersect: -37895251115.91897
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | chi2: 3.2820897564935634
[2025-11-27 06:02:30] 2025-11-27 05:01:57,884 | INFO     | sum of square deviations: 5202255680.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | sum of deviations: 174995833790.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | mean x: 1764211606.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | mean y: 2924385.80859375
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | intersect: -59342425026.61109
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | chi2: 1.452369467115813
[2025-11-27 06:02:30] 2025-11-27 05:01:57,885 | INFO     | current chi2=1.452369467115813 (change=55.748636543460684 %)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,886 | INFO     | sum of square deviations: 4903347750.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,886 | INFO     | sum of deviations: 168758230509.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,886 | INFO     | mean x: 1764211454.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,886 | INFO     | mean y: 2921202.988047809
[2025-11-27 06:02:30] 2025-11-27 05:01:57,887 | INFO     | intersect: -60715840426.910645
[2025-11-27 06:02:30] 2025-11-27 05:01:57,887 | INFO     | chi2: 1.4496345038911878
[2025-11-27 06:02:30] 2025-11-27 05:01:57,887 | INFO     | current chi2=1.4496345038911878 (change=0.1883104324725589 %)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,887 | INFO     | right removable region: 250
[2025-11-27 06:02:30] 2025-11-27 05:01:57,887 | INFO     | sum of square deviations: 5202255680.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | sum of deviations: 68953881103.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | mean x: 1764211911.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | mean y: 2920909.94921875
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | intersect: -23381023645.991844
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | chi2: 1.9036533333021692
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | current chi2=1.9036533333021692 (change=41.9987424312263 %)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,888 | INFO     | sum of square deviations: 4903347750.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,889 | INFO     | sum of deviations: 56050820022.000015
[2025-11-27 06:02:30] 2025-11-27 05:01:57,889 | INFO     | mean x: 1764212064.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,889 | INFO     | mean y: 2927487.956175299
[2025-11-27 06:02:30] 2025-11-27 05:01:57,889 | INFO     | intersect: -20164015164.623413
[2025-11-27 06:02:30] 2025-11-27 05:01:57,890 | INFO     | chi2: 1.8794450184587923
[2025-11-27 06:02:30] 2025-11-27 05:01:57,890 | INFO     | current chi2=1.8794450184587923 (change=1.2716766451055466 %)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,890 | INFO     | left removable region: 20
[2025-11-27 06:02:30] 2025-11-27 05:01:57,890 | INFO     | sum of square deviations: 3772712597.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | sum of deviations: 86238825579.0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | mean x: 1764212033.5
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | mean y: 2965293.747826087
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | intersect: -40324403915.928474
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | chi2: 0.01641721176013135
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | current memory leak: 22.86 B/s (using 230 data points, chi2=0.02)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | could have reported an average CPU frequency of 2971 MHz (12 samples)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | ..............................
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . Timing measurements:
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . get job = 0 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . initial setup = 1 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . payload setup = 2 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . stage-in = 0 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . payload execution = 15878 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . stage-out = 1 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | . log creation = 0 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,891 | INFO     | ..............................
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | 
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | job summary report
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | --------------------------------------------------
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | PanDA job id: 6896988843
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | task id: 47556161
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | errors: (none)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | pilot state: finished 
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | transexitcode: 0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | exeerrorcode: 0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | exeerrordiag: 
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | exitcode: 0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | exitmsg: OK
[2025-11-27 06:02:30] 2025-11-27 05:01:57,940 | INFO     | cpuconsumptiontime: 119948 s
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | nevents: 1000
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | neventsw: 0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | pid: 4668
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | pgrp: 4668
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | corecount: 8
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | event service: False
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | sizes: {0: 2284390, 2: 2284652, 11: 2284680, 15884: 2316984, 15885: 2326008, 15889: 2326064, 15893: 2326438}
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | --------------------------------------------------
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | 
[2025-11-27 06:02:30] 2025-11-27 05:01:57,941 | INFO     | executing command: ls -lF /tmp/job_10928097/atlas/pilot/slots/0
[2025-11-27 06:02:30] 2025-11-27 05:01:57,949 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | job 6896988843 has completed (purged errors)
[2025-11-27 06:02:30] 2025-11-27 05:01:57,950 | INFO     | overall cleanup function is called
[2025-11-27 06:02:30] 2025-11-27 05:01:58,957 | INFO     | --- collectZombieJob: --- 10, [4668]
[2025-11-27 06:02:30] 2025-11-27 05:01:58,958 | INFO     | zombie collector waiting for pid 4668
[2025-11-27 06:02:30] 2025-11-27 05:01:58,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:02:30] 2025-11-27 05:01:58,958 | INFO     | collected zombie processes
[2025-11-27 06:02:30] 2025-11-27 05:01:58,958 | INFO     | will attempt to kill all subprocesses of pid=4668
[2025-11-27 06:02:30] 2025-11-27 05:01:59,055 | INFO     | process IDs to be killed: [4668] (in reverse order)
[2025-11-27 06:02:30] 2025-11-27 05:01:59,090 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:02:30] 2025-11-27 05:01:59,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:02:30] 2025-11-27 05:01:59,094 | INFO     | did not find any defunct processes belonging to 4668
[2025-11-27 06:02:30] 2025-11-27 05:01:59,097 | INFO     | did not find any defunct processes belonging to 4668
[2025-11-27 06:02:30] 2025-11-27 05:01:59,097 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:02:30] 2025-11-27 05:01:59,097 | INFO     | ready for new job
[2025-11-27 06:02:30] 2025-11-27 05:01:59,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:02:30] 2025-11-27 05:01:59,098 | INFO     | ***************************************
[2025-11-27 06:02:30] 2025-11-27 05:01:59,099 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:02:30] 2025-11-27 05:01:59,099 | INFO     | ***************************************
[2025-11-27 06:02:30] 2025-11-27 05:01:59,099 | INFO     | 
[2025-11-27 06:02:30] 2025-11-27 05:01:59,113 | INFO     | architecture information:
[2025-11-27 06:02:30] 2025-11-27 05:01:59,113 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:02:30] 2025-11-27 05:01:59,119 | INFO     | cat /etc/os-release:
[2025-11-27 06:02:30] NAME="CentOS Linux"
[2025-11-27 06:02:30] VERSION="7 (Core)"
[2025-11-27 06:02:30] ID="centos"
[2025-11-27 06:02:30] ID_LIKE="rhel fedora"
[2025-11-27 06:02:30] VERSION_ID="7"
[2025-11-27 06:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:02:30] ANSI_COLOR="0;31"
[2025-11-27 06:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:02:30] HOME_URL="https://www.centos.org/"
[2025-11-27 06:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:02:30] 
[2025-11-27 06:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:02:30] 
[2025-11-27 06:02:30] 2025-11-27 05:01:59,119 | INFO     | ***************************************
[2025-11-27 06:02:30] 2025-11-27 05:01:59,621 | INFO     | executing command: df -mP /tmp/job_10928097/atlas/pilot/slots/0
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | INFO     | sufficient remaining disk space (218796916736 B)
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | INFO     | update_server=False
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:02:30] 2025-11-27 05:01:59,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:02:30] 2025-11-27 05:01:59,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:02:30] 2025-11-27 05:01:59,628 | INFO     | aborting loop
[2025-11-27 06:02:30] 2025-11-27 05:01:59,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:02:30] 2025-11-27 05:01:59,794 | INFO     | all data control threads have been joined
[2025-11-27 06:02:30] 2025-11-27 05:02:00,633 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:00,633 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:00,633 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:00,676 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:00,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:02:30] 2025-11-27 05:02:00,800 | INFO     | [data] control thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:00,846 | INFO     | all job control threads have been joined
[2025-11-27 06:02:30] 2025-11-27 05:02:01,077 | INFO     | all payload control threads have been joined
[2025-11-27 06:02:30] 2025-11-27 05:02:01,221 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,249 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,448 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,451 | INFO     | [job] validate thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,517 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,851 | INFO     | [job] control thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,878 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:01,998 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:02,081 | INFO     | [payload] control thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:02,778 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:03,764 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:02:30] 2025-11-27 05:02:17,824 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:02:30] 2025-11-27 05:02:19,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-27 06:02:30] 2025-11-27 05:02:24,942 | INFO     | all workflow threads have been joined
[2025-11-27 06:02:30] 2025-11-27 05:02:24,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:02:30] 2025-11-27 05:02:24,942 | INFO     | traces error code: 0
[2025-11-27 06:02:30] 2025-11-27 05:02:24,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | INFO     | PID=1572 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | INFO     | .. there are 4 such processes running
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:02:30] 2025-11-27 05:02:30,551 | INFO     | [monitor] control thread has ended
[2025-11-27 06:02:30] 2025-11-27 05:02:30,604 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:02:30] 2025-11-27 05:02:30,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:02:30] 2025-11-27 05:02:30,606 [wrapper] pilotpid: 1572
[2025-11-27 06:02:30] 2025-11-27 05:02:30,607 [wrapper] Pilot exit status: 0
[2025-11-27 06:02:30] 2025-11-27 05:02:30,611 [wrapper] pandaids: 6896988843
[2025-11-27 06:02:30] 2025-11-27 05:02:30,632 [wrapper] cleanup supervisor_pilot  6267 1573
[2025-11-27 06:02:30] 2025-11-27 05:02:30,634 [wrapper] Test setup, not cleaning
[2025-11-27 06:02:30] 2025-11-27 05:02:30,635 [wrapper] apfmon messages muted
[2025-11-27 06:02:30] 2025-11-27 05:02:30,636 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:02:30] 2025-11-27 05:02:30,637 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:02:30]  *** Error codes and diagnostics ***
[2025-11-27 06:02:30]     "exeErrorCode": 0,
[2025-11-27 06:02:30]     "exeErrorDiag": "",
[2025-11-27 06:02:30]     "pilotErrorCode": 0,
[2025-11-27 06:02:30]     "pilotErrorDiag": "",
[2025-11-27 06:02:30]  *** Listing of results directory ***
[2025-11-27 06:02:30] total 1297720
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user    576529 Nov 25 12:49 pilot3.tar.gz
[2025-11-27 06:02:30] -rwx------ 1 mf493845 unix-user     36292 Nov 25 13:02 runpilot2-wrapper.sh
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      5112 Nov 25 13:02 queuedata.json
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       100 Nov 26 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:02:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:52 run_atlas
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       105 Nov 26 23:52 job.xml
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user 409892574 Nov 27 01:36 EVNT.47483658._002156.pool.root.1
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:36 start_atlas.sh
[2025-11-27 06:02:30] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:36 shared
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 27 01:36 input.tar.gz
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      6392 Nov 27 01:36 init_data.xml
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user         0 Nov 27 01:36 boinc_setup_complete
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:36 boinc_mmap_file
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user         0 Nov 27 01:36 boinc_lockfile
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      2785 Nov 27 01:36 pandaJob.out
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user    991546 Nov 27 01:36 agis_schedconf.cvmfs.json
[2025-11-27 06:02:30] drwx------ 5 mf493845 unix-user       440 Nov 27 01:36 pilot3
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user 907343881 Nov 27 06:01 HITS.47556161._001397.pool.root.1
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user        95 Nov 27 06:01 pilot_heartbeat.json
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      1030 Nov 27 06:01 memory_monitor_summary.json
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user   1516240 Nov 27 06:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user   1561345 Nov 27 06:01 log.47556161._001397.job.log.tgz.1
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      8571 Nov 27 06:01 heartbeat.json
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       819 Nov 27 06:02 pilotlog.txt
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user   2306418 Nov 27 06:02 log.47556161._001397.job.log.1
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       353 Nov 27 06:02 output.list
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       620 Nov 27 06:02 runtime_log
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user   3891200 Nov 27 06:02 result.tar.gz
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user      9221 Nov 27 06:02 runtime_log.err
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user       649 Nov 27 06:02 nptKDmSv6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsMMKDmAVDtSn.diag
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user     21686 Nov 27 06:02 stderr.txt
[2025-11-27 06:02:30] HITS file was successfully produced:
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user 907343881 Nov 27 06:01 shared/HITS.pool.root.1
[2025-11-27 06:02:30]  *** Contents of shared directory: ***
[2025-11-27 06:02:30] total 1290764
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user 409892574 Nov 27 01:36 ATLAS.root_0
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:36 start_atlas.sh
[2025-11-27 06:02:30] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 27 01:36 input.tar.gz
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user 907343881 Nov 27 06:01 HITS.pool.root.1
[2025-11-27 06:02:30] -rw------- 1 mf493845 unix-user   3891200 Nov 27 06:02 result.tar.gz
06:02:32 (25887): run_atlas exited; CPU time 120143.826389
06:02:32 (25887): called boinc_finish(0)

</stderr_txt>
]]>

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