Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:02:37 (1345180): wrapper (7.7.26015): starting
13:02:37 (1345180): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:02:37] Arguments: --nthreads 8
[2025-11-26 13:02:37] Threads: 8
[2025-11-26 13:02:37] Checking for CVMFS
[2025-11-26 13:02:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:02:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:02:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:02:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:02:38] 2.11.3.0 386591 28898 151588 153334 2 114 26120144 45568000 24406 130560 0 157577528 99.771 113857990 22955 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-26 13:02:38] CVMFS is ok
[2025-11-26 13:02:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:02:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:02:38] Further information can be found at the LHC@home message board.
[2025-11-26 13:02:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:02:38] Checking for apptainer binary...
[2025-11-26 13:02:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:02:38] Running /usr/bin/apptainer --version
[2025-11-26 13:02:38] apptainer version 1.4.1-1.el9
[2025-11-26 13:02:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:02:39] wns0011.triumf.lcg
[2025-11-26 13:02:39] apptainer works
[2025-11-26 13:02:39] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:02:39] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:02:39] Starting ATLAS job with PandaID=6891562503
[2025-11-26 13:02:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:08:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . Timing measurements:
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . get job = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . initial setup = 3 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload setup = 11 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-in = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload execution = 98 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-out = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . log creation = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | ..............................
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 13:08:12] 2025-11-26 21:07:37,254 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891562503/pilotlog.txt
[2025-11-26 13:08:12] 2025-11-26 21:07:37,269 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 13:08:12] - Log from pilotlog.txt -
[2025-11-26 13:08:12] 2025-11-26 21:07:37,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891562503/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | INFO     | extracted standard info from prmon json
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 13:08:12] 2025-11-26 21:07:37,252 | WARNING  | wrong length of table data, x=[1764191022.0, 1764191083.0], y=[598.0, 412497.0] (must be same and length>=4)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,252 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | ..............................
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . Timing measurements:
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . get job = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . initial setup = 3 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload setup = 11 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-in = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload execution = 98 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-out = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . log creation = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | ..............................
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 13:08:12] 2025-11-26 21:07:37,254 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891562503/pilotlog.txt
[2025-11-26 13:08:12] 2025-11-26 21:07:37,269 | WARNING  | 
[2025-11-26 13:08:12] [begin log extracts]
[2025-11-26 13:08:12] - Log from pilotlog.txt -
[2025-11-26 13:08:12] 2025-11-26 21:07:37,250 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891562503/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | INFO     | extracted standard info from prmon json
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 13:08:12] 2025-11-26 21:07:37,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 13:08:12] 2025-11-26 21:07:37,252 | WARNING  | wrong length of table data, x=[1764191022.0, 1764191083.0], y=[598.0, 412497.0] (must be same and length>=4)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,252 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | ..............................
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . Timing measurements:
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . get job = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . initial setup = 3 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload setup = 11 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-in = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . payload execution = 98 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . stage-out = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | . log creation = 0 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | ..............................
[2025-11-26 13:08:12] 2025-11-26 21:07:37,253 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 13:08:12] 2025-11-26 21:07:37,254 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891562503/pilotlog.txt
[2025-11-26 13:08:12] [end log extracts]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,270 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,271 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 13:08:12] 2025-11-26 21:07:37,368 | INFO     | time since job start (275s) is within the limit (172800.0s)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | 
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | job summary report
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | --------------------------------------------------
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | PanDA job id: 6891562503
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | task id: 47493068
[2025-11-26 13:08:12] 2025-11-26 21:07:37,444 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 13:05:08,882 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | pilot state: failed 
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | transexitcode: 65
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | exeerrorcode: 65
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | exitcode: 65
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | cpuconsumptiontime: 46 s
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | nevents: 0
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | neventsw: 0
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | pid: 1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | pgrp: 1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:37,445 | INFO     | corecount: 8
[2025-11-26 13:08:12] 2025-11-26 21:07:37,446 | INFO     | event service: False
[2025-11-26 13:08:12] 2025-11-26 21:07:37,446 | INFO     | sizes: {0: 2284074, 1: 2284329, 10: 2284591, 12: 2284619, 114: 2310000, 115: 2314290, 118: 2314446, 255: 2314640}
[2025-11-26 13:08:12] 2025-11-26 21:07:37,446 | INFO     | --------------------------------------------------
[2025-11-26 13:08:12] 2025-11-26 21:07:37,446 | INFO     | 
[2025-11-26 13:08:12] 2025-11-26 21:07:37,446 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 13:08:12] 2025-11-26 21:07:37,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,589 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,589 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,590 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | job 6891562503 has completed (purged errors)
[2025-11-26 13:08:12] 2025-11-26 21:07:37,605 | INFO     | overall cleanup function is called
[2025-11-26 13:08:12] 2025-11-26 21:07:38,613 | INFO     | --- collectZombieJob: --- 10, [1355630]
[2025-11-26 13:08:12] 2025-11-26 21:07:38,613 | INFO     | zombie collector waiting for pid 1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:38,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:08:12] 2025-11-26 21:07:38,613 | INFO     | collected zombie processes
[2025-11-26 13:08:12] 2025-11-26 21:07:38,613 | INFO     | will attempt to kill all subprocesses of pid=1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:39,076 | INFO     | process IDs to be killed: [1355630] (in reverse order)
[2025-11-26 13:08:12] 2025-11-26 21:07:39,178 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:08:12] 2025-11-26 21:07:39,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:08:12] 2025-11-26 21:07:39,190 | INFO     | did not find any defunct processes belonging to 1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:39,223 | INFO     | did not find any defunct processes belonging to 1355630
[2025-11-26 13:08:12] 2025-11-26 21:07:39,224 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:08:12] 2025-11-26 21:07:39,224 | INFO     | ready for new job
[2025-11-26 13:08:12] 2025-11-26 21:07:39,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:08:12] 2025-11-26 21:07:39,234 | INFO     | ***************************************
[2025-11-26 13:08:12] 2025-11-26 21:07:39,234 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:08:12] 2025-11-26 21:07:39,234 | INFO     | ***************************************
[2025-11-26 13:08:12] 2025-11-26 21:07:39,234 | INFO     | 
[2025-11-26 13:08:12] 2025-11-26 21:07:39,236 | INFO     | architecture information:
[2025-11-26 13:08:12] 2025-11-26 21:07:39,236 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:08:12] 2025-11-26 21:07:39,358 | INFO     | cat /etc/os-release:
[2025-11-26 13:08:12] NAME="CentOS Linux"
[2025-11-26 13:08:12] VERSION="7 (Core)"
[2025-11-26 13:08:12] ID="centos"
[2025-11-26 13:08:12] ID_LIKE="rhel fedora"
[2025-11-26 13:08:12] VERSION_ID="7"
[2025-11-26 13:08:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:08:12] ANSI_COLOR="0;31"
[2025-11-26 13:08:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:08:12] HOME_URL="https://www.centos.org/"
[2025-11-26 13:08:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:08:12] 
[2025-11-26 13:08:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:08:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:08:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:08:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:08:12] 
[2025-11-26 13:08:12] 2025-11-26 21:07:39,358 | INFO     | ***************************************
[2025-11-26 13:08:12] 2025-11-26 21:07:39,862 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 13:08:12] 2025-11-26 21:07:39,893 | INFO     | sufficient remaining disk space (1118327275520 B)
[2025-11-26 13:08:12] 2025-11-26 21:07:39,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:08:12] 2025-11-26 21:07:39,893 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:08:12] 2025-11-26 21:07:39,893 | INFO     | update_server=False
[2025-11-26 13:08:12] 2025-11-26 21:07:39,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:08:12] 2025-11-26 21:07:39,896 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 13:08:12] 2025-11-26 21:07:39,896 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 13:08:12] 2025-11-26 21:07:39,896 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:08:12] 2025-11-26 21:07:39,896 | INFO     | will abort loop
[2025-11-26 13:08:12] 2025-11-26 21:07:39,910 | INFO     | all data control threads have been joined
[2025-11-26 13:08:12] 2025-11-26 21:07:40,340 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:08:12] 2025-11-26 21:07:40,417 | INFO     | all job control threads have been joined
[2025-11-26 13:08:12] 2025-11-26 21:07:40,899 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:40,903 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:40,924 | INFO     | [data] control thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:40,942 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,103 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,223 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,333 | INFO     | all payload control threads have been joined
[2025-11-26 13:08:12] 2025-11-26 21:07:41,372 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,372 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,424 | INFO     | [job] control thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,440 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:08:12] 2025-11-26 21:07:41,633 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:41,970 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:42,339 | INFO     | [payload] control thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:42,347 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:42,391 | INFO     | [job] validate thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:42,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:08:12] 2025-11-26 21:07:43,456 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:07:45,449 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:08:12] 2025-11-26 21:08:02,238 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:08:12] 2025-11-26 21:08:03,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328380614464)>', '<ExcThread(monitor, started 140327830669056)>']
[2025-11-26 13:08:12] 2025-11-26 21:08:08,178 | INFO     | all workflow threads have been joined
[2025-11-26 13:08:12] 2025-11-26 21:08:08,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:08:12] 2025-11-26 21:08:08,178 | INFO     | traces error code: 0
[2025-11-26 13:08:12] 2025-11-26 21:08:08,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:08:12] 2025-11-26 21:08:11,997 | INFO     | PID=1348907 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:08:12] 2025-11-26 21:08:11,998 | INFO     | .. there are 26 such processes running
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 13:08:12] 2025-11-26 21:08:12,016 | INFO     | [monitor] control thread has ended
[2025-11-26 13:08:12] 2025-11-26 21:08:12,631 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:08:12] 2025-11-26 21:08:12,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:08:12] 2025-11-26 21:08:12,634 [wrapper] pilotpid: 1348907
[2025-11-26 13:08:12] 2025-11-26 21:08:12,636 [wrapper] Pilot exit status: 0
[2025-11-26 13:08:12] 2025-11-26 21:08:12,662 [wrapper] pandaids: 6891562503
[2025-11-26 13:08:12] 2025-11-26 21:08:12,706 [wrapper] cleanup supervisor_pilot 1348913 1348908
[2025-11-26 13:08:12] 2025-11-26 21:08:12,709 [wrapper] Test setup, not cleaning
[2025-11-26 13:08:12] 2025-11-26 21:08:12,711 [wrapper] apfmon messages muted
[2025-11-26 13:08:12] 2025-11-26 21:08:12,714 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:08:12] 2025-11-26 21:08:12,715 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:08:12]  *** Error codes and diagnostics ***
[2025-11-26 13:08:12]     "exeErrorCode": 65,
[2025-11-26 13:08:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 13:08:12]     "pilotErrorCode": 1305,
[2025-11-26 13:08:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 13:08:12]  *** Listing of results directory ***
[2025-11-26 13:08:12] total 403320
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:15 pilot3.tar.gz
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:27 queuedata.json
[2025-11-26 13:08:12] -rwx------. 1 boinc boinc     36292 Nov 18 07:27 runpilot2-wrapper.sh
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc       100 Nov 26 13:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:08:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 13:02 run_atlas
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc       105 Nov 26 13:02 job.xml
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc      6445 Nov 26 13:02 init_data.xml
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc 408788255 Nov 26 13:02 EVNT.47493065._000105.pool.root.1
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc     15120 Nov 26 13:02 start_atlas.sh
[2025-11-26 13:08:12] drwxrwx--x. 2 boinc boinc      4096 Nov 26 13:02 shared
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc    590103 Nov 26 13:02 input.tar.gz
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc         0 Nov 26 13:02 boinc_lockfile
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc      2773 Nov 26 13:02 pandaJob.out
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc    991538 Nov 26 13:02 agis_schedconf.cvmfs.json
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc   1516240 Nov 26 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:08:12] drwx------. 5 boinc boinc      4096 Nov 26 13:03 pilot3
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc       525 Nov 26 13:05 boinc_task_state.xml
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc      1006 Nov 26 13:05 memory_monitor_summary.json
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc     48909 Nov 26 13:05 log.47493068._001048.job.log.tgz.1
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc     10329 Nov 26 13:07 heartbeat.json
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc      8192 Nov 26 13:08 boinc_mmap_file
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc        95 Nov 26 13:08 pilot_heartbeat.json
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc       893 Nov 26 13:08 pilotlog.txt
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc        23 Nov 26 13:08 wrapper_checkpoint.txt
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc    101585 Nov 26 13:08 log.47493068._001048.job.log.1
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc       186 Nov 26 13:08 output.list
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc       620 Nov 26 13:08 runtime_log
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc    174080 Nov 26 13:08 result.tar.gz
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc      8526 Nov 26 13:08 runtime_log.err
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc       647 Nov 26 13:08 0gHKDmYncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmARFKDmjTZhLm.diag
[2025-11-26 13:08:12] -rw-r--r--. 1 boinc boinc     22429 Nov 26 13:08 stderr.txt
[2025-11-26 13:08:12] No HITS result produced
[2025-11-26 13:08:12]  *** Contents of shared directory: ***
[2025-11-26 13:08:12] total 399980
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc 408788255 Nov 26 13:02 ATLAS.root_0
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc     15120 Nov 26 13:02 start_atlas.sh
[2025-11-26 13:08:12] -rw-r--r--. 2 boinc boinc    590103 Nov 26 13:02 input.tar.gz
[2025-11-26 13:08:12] -rw-------. 1 boinc boinc    174080 Nov 26 13:08 result.tar.gz
13:08:14 (1345180): run_atlas exited; CPU time 49.086347
13:08:14 (1345180): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN