Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:25:08 (28161): wrapper (7.7.26015): starting
00:25:08 (28161): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:25:08] Arguments: --nthreads 8
[2025-11-27 00:25:08] Threads: 8
[2025-11-27 00:25:08] Checking for CVMFS
[2025-11-27 00:25:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:25:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:25:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:25:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:25:08] 2.11.0.0 8101 66329 104320 153340 0 1 4079609 4096001 0 130560 1 3494865 99.356 4648977 533 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 00:25:08] CVMFS is ok
[2025-11-27 00:25:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:25:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:25:08] Further information can be found at the LHC@home message board.
[2025-11-27 00:25:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:25:08] Checking for apptainer binary...
[2025-11-27 00:25:08] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 00:25:08] apptainer is not installed, using version from CVMFS
[2025-11-27 00:25:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:25:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10928010/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node232
[2025-11-27 00:25:08] apptainer works
[2025-11-27 00:25:08] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:25:08] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:25:09] Starting ATLAS job with PandaID=6894238301
[2025-11-27 00:25:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10928010/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:48:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:48:55] 2025-11-27 01:48:23,559 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 02:48:55] 2025-11-27 01:48:23,559 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 02:48:55] 2025-11-27 01:48:23,560 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:48:55] 2025-11-27 01:48:23,560 | INFO     | sum of square deviations: 869188390.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | sum of deviations: -41205885825.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | mean x: 1764203802.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | mean y: 2710943.510638298
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | intersect: 83638872302.31906
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | chi2: 2.0692007012269427
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | sum of square deviations: 779958810.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | sum of deviations: -29753721089.5
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | mean x: 1764203649.5
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | mean y: 2730069.286764706
[2025-11-27 02:48:55] 2025-11-27 01:48:23,561 | INFO     | intersect: 67303237043.88074
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | chi2: 1.3935280386327942
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | current chi2=1.3935280386327942 (change=32.653800194128344 %)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | sum of square deviations: 697054930.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | sum of deviations: -27599323241.999992
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | mean x: 1764203497.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | mean y: 2734034.038167939
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | intersect: 69854937185.9042
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | chi2: 1.388273035128659
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | current chi2=1.388273035128659 (change=0.3771006652504069 %)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,562 | INFO     | right removable region: 130
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | sum of square deviations: 779958810.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | sum of deviations: -56814300353.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | mean x: 1764203954.5
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | mean y: 2737036.911764706
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | intersect: 128512104544.2976
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | chi2: 0.9261158612450773
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | current chi2=0.9261158612450773 (change=55.24282102282624 %)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,563 | INFO     | sum of square deviations: 697054930.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | sum of deviations: -52105031179.00006
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | mean x: 1764204107.0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | mean y: 2728348.290076336
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | intersect: 131877428669.76253
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | chi2: 0.9258870802588093
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | current chi2=0.9258870802588093 (change=0.0247032791297215 %)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | left removable region: 20
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | sum of square deviations: 412686807.5
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | sum of deviations: -28742085560.500008
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | mean x: 1764204076.5
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | mean y: 2732210.7
[2025-11-27 02:48:55] 2025-11-27 01:48:23,564 | INFO     | intersect: 122872917521.73857
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | chi2: 0.20623926846861326
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | current memory leak: -69.65 B/s (using 110 data points, chi2=0.21)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | could have reported an average CPU frequency of 2697 MHz (8 samples)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | ..............................
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . Timing measurements:
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . get job = 0 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . initial setup = 1 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . payload setup = 2 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . stage-in = 0 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . payload execution = 8566 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . stage-out = 0 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | . log creation = 0 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,565 | INFO     | ..............................
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | 
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | job summary report
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | --------------------------------------------------
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | PanDA job id: 6894238301
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | task id: 47523675
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | errors: (none)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | pilot state: finished 
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | transexitcode: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | exeerrorcode: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | exeerrordiag: 
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | exitcode: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | exitmsg: OK
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | cpuconsumptiontime: 63543 s
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | nevents: 400
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | neventsw: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | pid: 6232
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | pgrp: 6232
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | corecount: 8
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | event service: False
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | sizes: {0: 2284077, 2: 2284339, 11: 2284367, 8572: 2312477, 8573: 2321561, 8576: 2321699}
[2025-11-27 02:48:55] 2025-11-27 01:48:23,627 | INFO     | --------------------------------------------------
[2025-11-27 02:48:55] 2025-11-27 01:48:23,628 | INFO     | 
[2025-11-27 02:48:55] 2025-11-27 01:48:23,628 | INFO     | executing command: ls -lF /tmp/job_10928010/atlas/pilot/slots/0
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | job 6894238301 has completed (purged errors)
[2025-11-27 02:48:55] 2025-11-27 01:48:23,637 | INFO     | overall cleanup function is called
[2025-11-27 02:48:55] 2025-11-27 01:48:24,643 | INFO     | --- collectZombieJob: --- 10, [6232]
[2025-11-27 02:48:55] 2025-11-27 01:48:24,643 | INFO     | zombie collector waiting for pid 6232
[2025-11-27 02:48:55] 2025-11-27 01:48:24,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:48:55] 2025-11-27 01:48:24,643 | INFO     | collected zombie processes
[2025-11-27 02:48:55] 2025-11-27 01:48:24,643 | INFO     | will attempt to kill all subprocesses of pid=6232
[2025-11-27 02:48:55] 2025-11-27 01:48:24,763 | INFO     | process IDs to be killed: [6232] (in reverse order)
[2025-11-27 02:48:55] 2025-11-27 01:48:24,805 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:48:55] 2025-11-27 01:48:24,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:48:55] 2025-11-27 01:48:24,810 | INFO     | did not find any defunct processes belonging to 6232
[2025-11-27 02:48:55] 2025-11-27 01:48:24,813 | INFO     | did not find any defunct processes belonging to 6232
[2025-11-27 02:48:55] 2025-11-27 01:48:24,814 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:48:55] 2025-11-27 01:48:24,814 | INFO     | ready for new job
[2025-11-27 02:48:55] 2025-11-27 01:48:24,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:48:55] 2025-11-27 01:48:24,815 | INFO     | ***************************************
[2025-11-27 02:48:55] 2025-11-27 01:48:24,815 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:48:55] 2025-11-27 01:48:24,815 | INFO     | ***************************************
[2025-11-27 02:48:55] 2025-11-27 01:48:24,815 | INFO     | 
[2025-11-27 02:48:55] 2025-11-27 01:48:24,828 | INFO     | architecture information:
[2025-11-27 02:48:55] 2025-11-27 01:48:24,828 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:48:55] 2025-11-27 01:48:24,833 | INFO     | cat /etc/os-release:
[2025-11-27 02:48:55] NAME="CentOS Linux"
[2025-11-27 02:48:55] VERSION="7 (Core)"
[2025-11-27 02:48:55] ID="centos"
[2025-11-27 02:48:55] ID_LIKE="rhel fedora"
[2025-11-27 02:48:55] VERSION_ID="7"
[2025-11-27 02:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:48:55] ANSI_COLOR="0;31"
[2025-11-27 02:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:48:55] HOME_URL="https://www.centos.org/"
[2025-11-27 02:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:48:55] 
[2025-11-27 02:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:48:55] 
[2025-11-27 02:48:55] 2025-11-27 01:48:24,833 | INFO     | ***************************************
[2025-11-27 02:48:55] 2025-11-27 01:48:25,336 | INFO     | executing command: df -mP /tmp/job_10928010/atlas/pilot/slots/0
[2025-11-27 02:48:55] 2025-11-27 01:48:25,340 | INFO     | sufficient remaining disk space (220884631552 B)
[2025-11-27 02:48:55] 2025-11-27 01:48:25,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:48:55] 2025-11-27 01:48:25,340 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:48:55] 2025-11-27 01:48:25,340 | INFO     | update_server=False
[2025-11-27 02:48:55] 2025-11-27 01:48:25,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:48:55] 2025-11-27 01:48:25,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:48:55] 2025-11-27 01:48:25,521 | INFO     | all data control threads have been joined
[2025-11-27 02:48:55] 2025-11-27 01:48:25,645 | INFO     | all payload control threads have been joined
[2025-11-27 02:48:55] 2025-11-27 01:48:26,015 | WARNING  | process 6232 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 02:48:55] 2025-11-27 01:48:26,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:48:55] 2025-11-27 01:48:26,075 | INFO     | all job control threads have been joined
[2025-11-27 02:48:55] 2025-11-27 01:48:26,111 | INFO     | using path: /tmp/job_10928010/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:48:55] 2025-11-27 01:48:26,228 | INFO     | number of running child processes to parent process 6232: 1
[2025-11-27 02:48:55] 2025-11-27 01:48:26,228 | INFO     | maximum number of monitored processes: 6
[2025-11-27 02:48:55] 2025-11-27 01:48:26,228 | INFO     | aborting job monitoring since job object (job id=6894238301) has expired
[2025-11-27 02:48:55] 2025-11-27 01:48:26,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:48:55] 2025-11-27 01:48:26,228 | INFO     | will abort loop
[2025-11-27 02:48:55] 2025-11-27 01:48:26,346 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:26,346 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:26,526 | INFO     | [data] control thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:26,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:48:55] 2025-11-27 01:48:26,650 | INFO     | [payload] control thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:26,726 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,080 | INFO     | [job] control thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,081 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,234 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,235 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,343 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,416 | INFO     | [job] validate thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,422 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:27,678 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:28,027 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:28,630 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:48:55] 2025-11-27 01:48:30,569 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:36,060 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:48:55] 2025-11-27 01:48:37,065 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:48:55] 2025-11-27 01:48:38,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-27 02:48:55] 2025-11-27 01:48:43,853 | INFO     | all workflow threads have been joined
[2025-11-27 02:48:55] 2025-11-27 01:48:43,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:48:55] 2025-11-27 01:48:43,853 | INFO     | traces error code: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:43,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | INFO     | PID=31970 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | INFO     | .. there are 8 such processes running
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 02:48:55] 2025-11-27 01:48:55,302 | INFO     | [monitor] control thread has ended
[2025-11-27 02:48:55] 2025-11-27 01:48:55,355 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:48:55] 2025-11-27 01:48:55,357 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:48:55] 2025-11-27 01:48:55,358 [wrapper] pilotpid: 31970
[2025-11-27 02:48:55] 2025-11-27 01:48:55,358 [wrapper] Pilot exit status: 0
[2025-11-27 02:48:55] 2025-11-27 01:48:55,362 [wrapper] pandaids: 6894238301
[2025-11-27 02:48:55] 2025-11-27 01:48:55,387 [wrapper] cleanup supervisor_pilot  9421 31971
[2025-11-27 02:48:55] 2025-11-27 01:48:55,388 [wrapper] Test setup, not cleaning
[2025-11-27 02:48:55] 2025-11-27 01:48:55,389 [wrapper] apfmon messages muted
[2025-11-27 02:48:55] 2025-11-27 01:48:55,390 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:48:55] 2025-11-27 01:48:55,391 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:48:55]  *** Error codes and diagnostics ***
[2025-11-27 02:48:55]     "exeErrorCode": 0,
[2025-11-27 02:48:55]     "exeErrorDiag": "",
[2025-11-27 02:48:55]     "pilotErrorCode": 0,
[2025-11-27 02:48:55]     "pilotErrorDiag": "",
[2025-11-27 02:48:55]  *** Listing of results directory ***
[2025-11-27 02:48:55] total 617708
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user    576529 Nov 25 04:04 pilot3.tar.gz
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      5112 Nov 25 04:56 queuedata.json
[2025-11-27 02:48:55] -rwx------ 1 mf493845 unix-user     36292 Nov 25 05:00 runpilot2-wrapper.sh
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       100 Nov 26 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:48:55] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:13 run_atlas
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       105 Nov 26 23:13 job.xml
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 00:25 start_atlas.sh
[2025-11-27 02:48:55] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 00:25 shared
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user    589948 Nov 27 00:25 input.tar.gz
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      6392 Nov 27 00:25 init_data.xml
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user 282444322 Nov 27 00:25 EVNT.47523673._000004.pool.root.1
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user         0 Nov 27 00:25 boinc_setup_complete
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      8192 Nov 27 00:25 boinc_mmap_file
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user         0 Nov 27 00:25 boinc_lockfile
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      2614 Nov 27 00:25 pandaJob.out
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user    991538 Nov 27 00:25 agis_schedconf.cvmfs.json
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user   1516240 Nov 27 00:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:48:55] drwx------ 5 mf493845 unix-user       440 Nov 27 00:25 pilot3
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user 342987514 Nov 27 02:47 HITS.47523675._000081.pool.root.1
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      1014 Nov 27 02:48 memory_monitor_summary.json
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user        95 Nov 27 02:48 pilot_heartbeat.json
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user    370423 Nov 27 02:48 log.47523675._000081.job.log.tgz.1
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      7758 Nov 27 02:48 heartbeat.json
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       890 Nov 27 02:48 pilotlog.txt
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user   1235553 Nov 27 02:48 log.47523675._000081.job.log.1
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       357 Nov 27 02:48 output.list
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       620 Nov 27 02:48 runtime_log
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user   1628160 Nov 27 02:48 result.tar.gz
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user      9220 Nov 27 02:48 runtime_log.err
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user       646 Nov 27 02:48 8mcNDm2Ozh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFJJKDmVoo9Zm.diag
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user     21592 Nov 27 02:48 stderr.txt
[2025-11-27 02:48:55] HITS file was successfully produced:
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user 342987514 Nov 27 02:47 shared/HITS.pool.root.1
[2025-11-27 02:48:55]  *** Contents of shared directory: ***
[2025-11-27 02:48:55] total 612968
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 00:25 start_atlas.sh
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user    589948 Nov 27 00:25 input.tar.gz
[2025-11-27 02:48:55] -rw-r--r-- 2 mf493845 unix-user 282444322 Nov 27 00:25 ATLAS.root_0
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user 342987514 Nov 27 02:47 HITS.pool.root.1
[2025-11-27 02:48:55] -rw------- 1 mf493845 unix-user   1628160 Nov 27 02:48 result.tar.gz
02:48:57 (28161): run_atlas exited; CPU time 63681.581772
02:48:57 (28161): called boinc_finish(0)

</stderr_txt>
]]>

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