Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:22:26 (1833262): wrapper (7.7.26015): starting
17:22:26 (1833262): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:22:26] Arguments: --nthreads 8
[2025-11-26 17:22:26] Threads: 8
[2025-11-26 17:22:26] Checking for CVMFS
[2025-11-26 17:22:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:22:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:22:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:22:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:22:27] 2.13.3.0 15397 30505 225344 153337 2 235 28721331 32935937 49516 16776704 0 312916939 99.619 301596275 35983 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:22:27] CVMFS is ok
[2025-11-26 17:22:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:22:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:22:27] Further information can be found at the LHC@home message board.
[2025-11-26 17:22:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:22:27] Checking for apptainer binary...
[2025-11-26 17:22:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:22:27] Running /usr/bin/apptainer --version
[2025-11-26 17:22:27] apptainer version 1.4.4-1.el9
[2025-11-26 17:22:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:22:27] c7-16-8.aglt2.org
[2025-11-26 17:22:27] apptainer works
[2025-11-26 17:22:27] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:22:27] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:22:27] Starting ATLAS job with PandaID=6896297132
[2025-11-26 17:22:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:05 (1833262): BOINC client no longer exists - exiting
23:20:05 (1833262): timer handler: client dead, exiting
23:31:54 (748112): wrapper (7.7.26015): starting
23:31:54 (748112): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:31:54] Arguments: --nthreads 8
[2025-11-26 23:31:54] Threads: 8
[2025-11-26 23:31:54] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:31:55] Checking for CVMFS
[2025-11-26 23:31:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:31:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:31:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:31:55] 2.13.3.0 15397 30874 222568 153347 1 206 27836279 32935936 50280 16776704 0 318365493 99.620 305969494 35775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:31:55] CVMFS is ok
[2025-11-26 23:31:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:31:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:31:55] Further information can be found at the LHC@home message board.
[2025-11-26 23:31:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:31:55] Checking for apptainer binary...
[2025-11-26 23:31:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:31:55] Running /usr/bin/apptainer --version
[2025-11-26 23:31:55] apptainer version 1.4.4-1.el9
[2025-11-26 23:31:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:31:55] c7-16-8.aglt2.org
[2025-11-26 23:31:55] apptainer works
[2025-11-26 23:31:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:31:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:31:55] Starting ATLAS job with PandaID=6896297132
[2025-11-26 23:31:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:22:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:22:45] 2025-11-27 18:22:04,613 | INFO     | sum of square deviations: 168482639513.50946
[2025-11-27 13:22:45] 2025-11-27 18:22:04,668 | INFO     | sum of deviations: 1945004696467.71
[2025-11-27 13:22:45] 2025-11-27 18:22:04,668 | INFO     | mean x: 1764242820.02451
[2025-11-27 13:22:45] 2025-11-27 18:22:04,668 | INFO     | mean y: 3044710.464460784
[2025-11-27 13:22:45] 2025-11-27 18:22:04,668 | INFO     | intersect: -20363804838.933556
[2025-11-27 13:22:45] 2025-11-27 18:22:04,669 | INFO     | chi2: 7.478365970241955
[2025-11-27 13:22:45] 2025-11-27 18:22:04,710 | INFO     | sum of square deviations: 165404647222.12576
[2025-11-27 13:22:45] 2025-11-27 18:22:04,917 | INFO     | sum of deviations: 2243812549119.639
[2025-11-27 13:22:45] 2025-11-27 18:22:04,917 | INFO     | mean x: 1764242667.5277436
[2025-11-27 13:22:45] 2025-11-27 18:22:04,917 | INFO     | mean y: 3059513.905055487
[2025-11-27 13:22:45] 2025-11-27 18:22:04,918 | INFO     | intersect: -23929942995.842583
[2025-11-27 13:22:45] 2025-11-27 18:22:04,935 | INFO     | chi2: 4.0432654964354615
[2025-11-27 13:22:45] 2025-11-27 18:22:04,936 | INFO     | current chi2=4.0432654964354615 (change=45.93383751845665 %)
[2025-11-27 13:22:45] 2025-11-27 18:22:04,936 | INFO     | sum of square deviations: 162364376568.2264
[2025-11-27 13:22:45] 2025-11-27 18:22:05,039 | INFO     | sum of deviations: 2401467024538.374
[2025-11-27 13:22:45] 2025-11-27 18:22:05,039 | INFO     | mean x: 1764242515.0310173
[2025-11-27 13:22:45] 2025-11-27 18:22:05,039 | INFO     | mean y: 3067407.9851116627
[2025-11-27 13:22:45] 2025-11-27 18:22:05,039 | INFO     | intersect: -26091143112.112076
[2025-11-27 13:22:45] 2025-11-27 18:22:05,040 | INFO     | chi2: 2.670943802847417
[2025-11-27 13:22:45] 2025-11-27 18:22:05,040 | INFO     | current chi2=2.670943802847417 (change=33.94092460160932 %)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,070 | INFO     | sum of square deviations: 159361349159.6176
[2025-11-27 13:22:45] 2025-11-27 18:22:05,459 | INFO     | time since job start (49796s) is within the limit (172800.0s)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,462 | INFO     | sum of deviations: 2374104332818.4487
[2025-11-27 13:22:45] 2025-11-27 18:22:05,462 | INFO     | mean x: 1764242362.52809
[2025-11-27 13:22:45] 2025-11-27 18:22:05,462 | INFO     | mean y: 3066018.4244694132
[2025-11-27 13:22:45] 2025-11-27 18:22:05,462 | INFO     | intersect: -26279940865.663616
[2025-11-27 13:22:45] 2025-11-27 18:22:05,467 | INFO     | chi2: 2.6618899533860994
[2025-11-27 13:22:45] 2025-11-27 18:22:05,467 | INFO     | current chi2=2.6618899533860994 (change=0.33897566289734127 %)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,467 | INFO     | right removable region: 800
[2025-11-27 13:22:45] 2025-11-27 18:22:05,468 | INFO     | sum of square deviations: 165404435674.1802
[2025-11-27 13:22:45] 2025-11-27 18:22:05,493 | INFO     | sum of deviations: 1723840405979.6394
[2025-11-27 13:22:45] 2025-11-27 18:22:05,493 | INFO     | mean x: 1764242972.5265105
[2025-11-27 13:22:45] 2025-11-27 18:22:05,493 | INFO     | mean y: 3055648.598027127
[2025-11-27 13:22:45] 2025-11-27 18:22:05,493 | INFO     | intersect: -18383835305.14664
[2025-11-27 13:22:45] 2025-11-27 18:22:05,494 | INFO     | chi2: 5.520198782707598
[2025-11-27 13:22:45] 2025-11-27 18:22:05,494 | INFO     | current chi2=5.520198782707598 (change=26.184425786680276 %)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,494 | INFO     | sum of square deviations: 162363904245.28488
[2025-11-27 13:22:45] 2025-11-27 18:22:05,524 | INFO     | sum of deviations: 1640927094280.1362
[2025-11-27 13:22:45] 2025-11-27 18:22:05,524 | INFO     | mean x: 1764243125.0297766
[2025-11-27 13:22:45] 2025-11-27 18:22:05,525 | INFO     | mean y: 3059806.2444168734
[2025-11-27 13:22:45] 2025-11-27 18:22:05,525 | INFO     | intersect: -17827223089.548233
[2025-11-27 13:22:45] 2025-11-27 18:22:05,525 | INFO     | chi2: 5.426593912517291
[2025-11-27 13:22:45] 2025-11-27 18:22:05,525 | INFO     | current chi2=5.426593912517291 (change=1.6956793382791047 %)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,526 | INFO     | left removable region: 20
[2025-11-27 13:22:45] 2025-11-27 18:22:05,526 | INFO     | sum of square deviations: 147153050348.19876
[2025-11-27 13:22:45] 2025-11-27 18:22:05,644 | INFO     | monitor loop #2551: job 0:6896297132 is in state 'finished'
[2025-11-27 13:22:45] 2025-11-27 18:22:05,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,680 | INFO     | sum of deviations: 1941506776456.237
[2025-11-27 13:22:45] 2025-11-27 18:22:05,680 | INFO     | mean x: 1764242942.0320513
[2025-11-27 13:22:45] 2025-11-27 18:22:05,680 | INFO     | mean y: 3088024.2705128207
[2025-11-27 13:22:45] 2025-11-27 18:22:05,681 | INFO     | intersect: -23273966845.915833
[2025-11-27 13:22:45] 2025-11-27 18:22:05,690 | INFO     | chi2: 0.5412590632417257
[2025-11-27 13:22:45] 2025-11-27 18:22:05,691 | INFO     | current memory leak: 13.19 B/s (using 780 data points, chi2=0.54)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,691 | INFO     | could have reported an average CPU frequency of 3167 MHz (31 samples)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | ..............................
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . Timing measurements:
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . get job = 0 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . initial setup = 2 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . payload setup = 7 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . stage-in = 0 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . payload execution = 49745 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . stage-out = 7 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | . log creation = 2 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,692 | INFO     | ..............................
[2025-11-27 13:22:45] 2025-11-27 18:22:05,927 | INFO     | 
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | job summary report
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | --------------------------------------------------
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | PanDA job id: 6896297132
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | task id: 47556161
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | errors: (none)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:22:45] 2025-11-27 18:22:05,928 | INFO     | pilot state: finished 
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | transexitcode: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | exeerrorcode: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | exeerrordiag: 
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | exitcode: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | exitmsg: OK
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | cpuconsumptiontime: 199931 s
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | nevents: 1000
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | neventsw: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | pid: 836322
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | pgrp: 836322
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | corecount: 8
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | event service: False
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | sizes: {0: 2284091, 1: 2284290, 7: 2284552, 11: 2284580, 49759: 2332541, 49767: 2341535, 49768: 2341719, 49780: 2341965}
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | --------------------------------------------------
[2025-11-27 13:22:45] 2025-11-27 18:22:05,929 | INFO     | 
[2025-11-27 13:22:45] 2025-11-27 18:22:05,930 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 13:22:45] 2025-11-27 18:22:05,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,961 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:22:45] 2025-11-27 18:22:05,963 | INFO     | job 6896297132 has completed (purged errors)
[2025-11-27 13:22:45] 2025-11-27 18:22:05,963 | INFO     | overall cleanup function is called
[2025-11-27 13:22:45] 2025-11-27 18:22:06,979 | INFO     | --- collectZombieJob: --- 10, [836322]
[2025-11-27 13:22:45] 2025-11-27 18:22:06,980 | INFO     | zombie collector waiting for pid 836322
[2025-11-27 13:22:45] 2025-11-27 18:22:06,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:22:45] 2025-11-27 18:22:06,980 | INFO     | collected zombie processes
[2025-11-27 13:22:45] 2025-11-27 18:22:06,980 | INFO     | will attempt to kill all subprocesses of pid=836322
[2025-11-27 13:22:45] 2025-11-27 18:22:08,943 | INFO     | process IDs to be killed: [836322] (in reverse order)
[2025-11-27 13:22:45] 2025-11-27 18:22:09,259 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:22:45] 2025-11-27 18:22:09,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:22:45] 2025-11-27 18:22:09,310 | INFO     | did not find any defunct processes belonging to 836322
[2025-11-27 13:22:45] 2025-11-27 18:22:09,344 | INFO     | did not find any defunct processes belonging to 836322
[2025-11-27 13:22:45] 2025-11-27 18:22:09,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:22:45] 2025-11-27 18:22:09,357 | INFO     | ready for new job
[2025-11-27 13:22:45] 2025-11-27 18:22:09,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:22:45] 2025-11-27 18:22:09,368 | INFO     | ***************************************
[2025-11-27 13:22:45] 2025-11-27 18:22:09,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:22:45] 2025-11-27 18:22:09,369 | INFO     | ***************************************
[2025-11-27 13:22:45] 2025-11-27 18:22:09,369 | INFO     | 
[2025-11-27 13:22:45] 2025-11-27 18:22:09,389 | INFO     | architecture information:
[2025-11-27 13:22:45] 2025-11-27 18:22:09,399 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:22:45] 2025-11-27 18:22:09,507 | INFO     | cat /etc/os-release:
[2025-11-27 13:22:45] NAME="CentOS Linux"
[2025-11-27 13:22:45] VERSION="7 (Core)"
[2025-11-27 13:22:45] ID="centos"
[2025-11-27 13:22:45] ID_LIKE="rhel fedora"
[2025-11-27 13:22:45] VERSION_ID="7"
[2025-11-27 13:22:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:22:45] ANSI_COLOR="0;31"
[2025-11-27 13:22:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:22:45] HOME_URL="https://www.centos.org/"
[2025-11-27 13:22:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:22:45] 
[2025-11-27 13:22:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:22:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:22:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:22:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:22:45] 
[2025-11-27 13:22:45] 2025-11-27 18:22:09,512 | INFO     | ***************************************
[2025-11-27 13:22:45] 2025-11-27 18:22:10,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 13:22:45] 2025-11-27 18:22:10,100 | INFO     | sufficient remaining disk space (62574821376 B)
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | INFO     | update_server=False
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | INFO     | aborting loop
[2025-11-27 13:22:45] 2025-11-27 18:22:10,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:22:45] 2025-11-27 18:22:10,270 | INFO     | all job control threads have been joined
[2025-11-27 13:22:45] 2025-11-27 18:22:10,815 | INFO     | all data control threads have been joined
[2025-11-27 13:22:45] 2025-11-27 18:22:10,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:22:45] 2025-11-27 18:22:11,127 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,128 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:22:45] 2025-11-27 18:22:11,272 | INFO     | all payload control threads have been joined
[2025-11-27 13:22:45] 2025-11-27 18:22:11,276 | INFO     | [job] control thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,676 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,846 | INFO     | [data] control thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:11,971 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,111 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,119 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,120 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,172 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,173 | INFO     | [job] validate thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,277 | INFO     | [payload] control thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:12,656 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:13,160 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:14,111 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:22:45] 2025-11-27 18:22:38,723 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:22:45] 2025-11-27 18:22:38,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768960780096)>', '<ExcThread(monitor, started 139768587327232)>']
[2025-11-27 13:22:45] 2025-11-27 18:22:41,769 | INFO     | PID=776646 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 13:22:45] 2025-11-27 18:22:41,769 | INFO     | .. there are 76 such processes running
[2025-11-27 13:22:45] 2025-11-27 18:22:41,773 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:22:45] 2025-11-27 18:22:41,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:22:45] 2025-11-27 18:22:41,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:22:45] 2025-11-27 18:22:41,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:22:45] 2025-11-27 18:22:41,773 | INFO     | [monitor] control thread has ended
[2025-11-27 13:22:45] 2025-11-27 18:22:43,921 | INFO     | all workflow threads have been joined
[2025-11-27 13:22:45] 2025-11-27 18:22:43,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:22:45] 2025-11-27 18:22:43,922 | INFO     | traces error code: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:43,922 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:22:45] 2025-11-27 18:22:44,871 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:22:45] 2025-11-27 18:22:44,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:22:45] 2025-11-27 18:22:44,876 [wrapper] pilotpid: 776646
[2025-11-27 13:22:45] 2025-11-27 18:22:44,891 [wrapper] Pilot exit status: 0
[2025-11-27 13:22:45] 2025-11-27 18:22:44,901 [wrapper] pandaids: 6896297132 6896297132
[2025-11-27 13:22:45] 2025-11-27 18:22:45,052 [wrapper] cleanup supervisor_pilot 1797769 776647
[2025-11-27 13:22:45] 2025-11-27 18:22:45,055 [wrapper] Test setup, not cleaning
[2025-11-27 13:22:45] 2025-11-27 18:22:45,058 [wrapper] apfmon messages muted
[2025-11-27 13:22:45] 2025-11-27 18:22:45,060 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:22:45] 2025-11-27 18:22:45,062 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:22:45]  *** Error codes and diagnostics ***
[2025-11-27 13:22:45]     "exeErrorCode": 0,
[2025-11-27 13:22:45]     "exeErrorDiag": "",
[2025-11-27 13:22:45]     "pilotErrorCode": 0,
[2025-11-27 13:22:45]     "pilotErrorDiag": "",
[2025-11-27 13:22:45]  *** Listing of results directory ***
[2025-11-27 13:22:45] total 1729460
[2025-11-27 13:22:45] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 19:45 queuedata.json
[2025-11-27 13:22:45] -rwx------. 1 boincer umatlas     36292 Nov 24 19:46 runpilot2-wrapper.sh
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:22:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:22 run_atlas
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:22 job.xml
[2025-11-27 13:22:45] -rw-r--r--. 3 boincer umatlas 410147052 Nov 26 17:22 EVNT.47483658._002072.pool.root.1
[2025-11-27 13:22:45] -rw-r--r--. 3 boincer umatlas 410147052 Nov 26 17:22 ATLAS.root_0
[2025-11-27 13:22:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:22 start_atlas.sh
[2025-11-27 13:22:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:22 shared
[2025-11-27 13:22:45] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 17:22 input.tar.gz
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:22 boinc_lockfile
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 23:31 pandaJob.out
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas        57 Nov 26 23:31 setup.sh.local
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas    991570 Nov 26 23:32 agis_schedconf.cvmfs.json
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:11 boinc_task_state.xml
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas 931338579 Nov 27 13:20 HITS.47556161._000557.pool.root.1
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas      1073 Nov 27 13:21 memory_monitor_summary.json
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas   1965071 Nov 27 13:21 log.47556161._000557.job.log.tgz.1
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas      8631 Nov 27 13:22 heartbeat.json
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 13:22 init_data.xml
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas        96 Nov 27 13:22 pilot_heartbeat.json
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:22 boinc_mmap_file
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:22 wrapper_checkpoint.txt
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas      4823 Nov 27 13:22 pilotlog.txt
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas   5739158 Nov 27 13:22 log.47556161._000557.job.log.1
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas       353 Nov 27 13:22 output.list
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:22 runtime_log
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas   7720960 Nov 27 13:22 result.tar.gz
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 13:22 runtime_log.err
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas       790 Nov 27 13:22 LOWMDmANwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuFJKDmHgShkn.diag
[2025-11-27 13:22:45] -rw-r--r--. 1 boincer umatlas     23493 Nov 27 13:22 stderr.txt
[2025-11-27 13:22:45] HITS file was successfully produced:
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas 931338579 Nov 27 13:20 shared/HITS.pool.root.1
[2025-11-27 13:22:45]  *** Contents of shared directory: ***
[2025-11-27 13:22:45] total 1318192
[2025-11-27 13:22:45] -rw-r--r--. 3 boincer umatlas 410147052 Nov 26 17:22 ATLAS.root_0
[2025-11-27 13:22:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:22 start_atlas.sh
[2025-11-27 13:22:45] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 17:22 input.tar.gz
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas 931338579 Nov 27 13:20 HITS.pool.root.1
[2025-11-27 13:22:45] -rw-------. 1 boincer umatlas   7720960 Nov 27 13:22 result.tar.gz
13:22:46 (748112): run_atlas exited; CPU time 200812.567436
13:22:46 (748112): called boinc_finish(0)

</stderr_txt>
]]>

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