Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:20 (1966185): wrapper (7.7.26015): starting
16:32:20 (1966185): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 16:32:20] Arguments: --nthreads 12
[2025-11-26 16:32:20] Threads: 12
[2025-11-26 16:32:20] Checking for CVMFS
[2025-11-26 16:32:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:32:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:32:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:32:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:32:25] 2.8.1.0 1966446 0 30204 153335 3 1 3883691 4096000 0 130560 0 0 0.000 1292 698 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 16:32:25] CVMFS is ok
[2025-11-26 16:32:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:32:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:32:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 16:32:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 16:32:25] Further information can be found at the LHC@home message board.
[2025-11-26 16:32:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:32:25] Checking for apptainer binary...
[2025-11-26 16:32:25] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-26 16:32:25] apptainer is not installed, using version from CVMFS
[2025-11-26 16:32:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:32:26] farmville.blisteringsheep.pec
[2025-11-26 16:32:26] apptainer works
[2025-11-26 16:32:26] Set ATHENA_PROC_NUMBER=12
[2025-11-26 16:32:26] Set ATHENA_CORE_NUMBER=12
[2025-11-26 16:32:26] Starting ATLAS job with PandaID=6896922923
[2025-11-26 16:32:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:25:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:25:18] 2025-11-27 02:24:26,730 | INFO     | time since job start (17503s) is within the limit (172800.0s)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,735 | INFO     | time since job start (17505s) is within the limit (172800.0s)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,876 | INFO     | monitor loop #1290: job 0:6896922923 is in state 'finished'
[2025-11-26 21:25:18] 2025-11-27 02:24:28,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,891 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:25:18] 2025-11-27 02:24:28,894 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2570.023541666667
[2025-11-26 21:25:18] 2025-11-27 02:24:28,898 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6896922923/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,899 | INFO     | extracted standard info from prmon json
[2025-11-26 21:25:18] 2025-11-27 02:24:28,899 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:25:18] 2025-11-27 02:24:28,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:25:18] 2025-11-27 02:24:28,902 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:25:18] 2025-11-27 02:24:28,902 | INFO     | sum of square deviations: 7329222045.156819
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | sum of deviations: 259247043263.50528
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | mean x: 1764201511.651568
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | mean y: 3551589.6550522647
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | intersect: -62399254983.64333
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | chi2: 5.159445895915396
[2025-11-26 21:25:18] 2025-11-27 02:24:28,904 | INFO     | sum of square deviations: 6952797600.496481
[2025-11-26 21:25:18] 2025-11-27 02:24:28,905 | INFO     | sum of deviations: 362628321846.51074
[2025-11-26 21:25:18] 2025-11-27 02:24:28,905 | INFO     | mean x: 1764201359.1631205
[2025-11-26 21:25:18] 2025-11-27 02:24:28,906 | INFO     | mean y: 3593339.510638298
[2025-11-26 21:25:18] 2025-11-27 02:24:28,906 | INFO     | intersect: -92009638604.27167
[2025-11-26 21:25:18] 2025-11-27 02:24:28,906 | INFO     | chi2: 2.438496851324132
[2025-11-26 21:25:18] 2025-11-27 02:24:28,906 | INFO     | current chi2=2.438496851324132 (change=52.737233793756246 %)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,906 | INFO     | sum of square deviations: 6589489680.758146
[2025-11-26 21:25:18] 2025-11-27 02:24:28,907 | INFO     | sum of deviations: 352394836936.8304
[2025-11-26 21:25:18] 2025-11-27 02:24:28,907 | INFO     | mean x: 1764201206.6750903
[2025-11-26 21:25:18] 2025-11-27 02:24:28,907 | INFO     | mean y: 3589021.7870036103
[2025-11-26 21:25:18] 2025-11-27 02:24:28,908 | INFO     | intersect: -94342927426.28177
[2025-11-26 21:25:18] 2025-11-27 02:24:28,908 | INFO     | chi2: 2.4232929570904056
[2025-11-26 21:25:18] 2025-11-27 02:24:28,908 | INFO     | current chi2=2.4232929570904056 (change=0.6234945198092163 %)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,908 | INFO     | right removable region: 276
[2025-11-26 21:25:18] 2025-11-27 02:24:28,908 | INFO     | sum of square deviations: 6952700793.819158
[2025-11-26 21:25:18] 2025-11-27 02:24:28,909 | INFO     | sum of deviations: 158266817955.43613
[2025-11-26 21:25:18] 2025-11-27 02:24:28,909 | INFO     | mean x: 1764201664.1595745
[2025-11-26 21:25:18] 2025-11-27 02:24:28,909 | INFO     | mean y: 3592341.634751773
[2025-11-26 21:25:18] 2025-11-27 02:24:28,909 | INFO     | intersect: -40155561906.22793
[2025-11-26 21:25:18] 2025-11-27 02:24:28,910 | INFO     | chi2: 2.882577231954368
[2025-11-26 21:25:18] 2025-11-27 02:24:28,910 | INFO     | current chi2=2.882577231954368 (change=44.130100594010834 %)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,910 | INFO     | sum of square deviations: 6589365120.729234
[2025-11-26 21:25:18] 2025-11-27 02:24:28,911 | INFO     | sum of deviations: 130706756082.03262
[2025-11-26 21:25:18] 2025-11-27 02:24:28,911 | INFO     | mean x: 1764201816.6534295
[2025-11-26 21:25:18] 2025-11-27 02:24:28,911 | INFO     | mean y: 3603891.2815884477
[2025-11-26 21:25:18] 2025-11-27 02:24:28,911 | INFO     | intersect: -34991132673.45734
[2025-11-26 21:25:18] 2025-11-27 02:24:28,912 | INFO     | chi2: 2.811441268722528
[2025-11-26 21:25:18] 2025-11-27 02:24:28,912 | INFO     | current chi2=2.811441268722528 (change=2.467790366317794 %)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,912 | INFO     | left removable region: 20
[2025-11-26 21:25:18] 2025-11-27 02:24:28,912 | INFO     | sum of square deviations: 5201389597.777344
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | sum of deviations: 190977561106.96875
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | mean x: 1764201786.1679688
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | mean y: 3658984.09375
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | intersect: -64771906869.86391
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | chi2: 0.014210807982076842
[2025-11-26 21:25:18] 2025-11-27 02:24:28,913 | INFO     | current memory leak: 36.72 B/s (using 256 data points, chi2=0.01)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | could have reported an average CPU frequency of 2927 MHz (13 samples)
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | ..............................
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . Timing measurements:
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . get job = 0 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . initial setup = 3 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . payload setup = 5 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . stage-in = 0 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . payload execution = 17471 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . stage-out = 4 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | . log creation = 0 s
[2025-11-26 21:25:18] 2025-11-27 02:24:28,914 | INFO     | ..............................
[2025-11-26 21:25:18] 2025-11-27 02:24:29,073 | INFO     | 
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | job summary report
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | --------------------------------------------------
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | PanDA job id: 6896922923
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | task id: 47556161
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | errors: (none)
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | pilot state: finished 
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | transexitcode: 0
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | exeerrorcode: 0
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | exeerrordiag: 
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | exitcode: 0
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | exitmsg: OK
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | cpuconsumptiontime: 203802 s
[2025-11-26 21:25:18] 2025-11-27 02:24:29,074 | INFO     | nevents: 1000
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | neventsw: 0
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | pid: 1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | pgrp: 1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | corecount: 12
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | event service: False
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | sizes: {0: 2284042, 1: 2284241, 4: 2284503, 11: 2284531, 17481: 2317508, 17485: 2326502, 17486: 2326686, 17491: 2326932}
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | --------------------------------------------------
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | 
[2025-11-26 21:25:18] 2025-11-27 02:24:29,075 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 21:25:18] 2025-11-27 02:24:29,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | job 6896922923 has completed (purged errors)
[2025-11-26 21:25:18] 2025-11-27 02:24:29,089 | INFO     | overall cleanup function is called
[2025-11-26 21:25:18] 2025-11-27 02:24:30,101 | INFO     | --- collectZombieJob: --- 10, [1978260]
[2025-11-26 21:25:18] 2025-11-27 02:24:30,101 | INFO     | zombie collector waiting for pid 1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:30,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:25:18] 2025-11-27 02:24:30,102 | INFO     | collected zombie processes
[2025-11-26 21:25:18] 2025-11-27 02:24:30,102 | INFO     | will attempt to kill all subprocesses of pid=1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:30,242 | INFO     | process IDs to be killed: [1978260] (in reverse order)
[2025-11-26 21:25:18] 2025-11-27 02:24:30,284 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:25:18] 2025-11-27 02:24:30,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:25:18] 2025-11-27 02:24:30,288 | INFO     | did not find any defunct processes belonging to 1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:30,291 | INFO     | did not find any defunct processes belonging to 1978260
[2025-11-26 21:25:18] 2025-11-27 02:24:30,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:25:18] 2025-11-27 02:24:30,292 | INFO     | ready for new job
[2025-11-26 21:25:18] 2025-11-27 02:24:30,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:25:18] 2025-11-27 02:24:30,293 | INFO     | ***************************************
[2025-11-26 21:25:18] 2025-11-27 02:24:30,293 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:25:18] 2025-11-27 02:24:30,294 | INFO     | ***************************************
[2025-11-26 21:25:18] 2025-11-27 02:24:30,294 | INFO     | 
[2025-11-26 21:25:18] 2025-11-27 02:24:30,295 | INFO     | architecture information:
[2025-11-26 21:25:18] 2025-11-27 02:24:30,295 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:25:18] 2025-11-27 02:24:30,303 | INFO     | cat /etc/os-release:
[2025-11-26 21:25:18] NAME="CentOS Linux"
[2025-11-26 21:25:18] VERSION="7 (Core)"
[2025-11-26 21:25:18] ID="centos"
[2025-11-26 21:25:18] ID_LIKE="rhel fedora"
[2025-11-26 21:25:18] VERSION_ID="7"
[2025-11-26 21:25:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:25:18] ANSI_COLOR="0;31"
[2025-11-26 21:25:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:25:18] HOME_URL="https://www.centos.org/"
[2025-11-26 21:25:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:25:18] 
[2025-11-26 21:25:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:25:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:25:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:25:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:25:18] 
[2025-11-26 21:25:18] 2025-11-27 02:24:30,304 | INFO     | ***************************************
[2025-11-26 21:25:18] 2025-11-27 02:24:30,806 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | INFO     | sufficient remaining disk space (340399226880 B)
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | INFO     | update_server=False
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:25:18] 2025-11-27 02:24:30,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:25:18] 2025-11-27 02:24:30,818 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:25:18] 2025-11-27 02:24:30,818 | INFO     | aborting loop
[2025-11-26 21:25:18] 2025-11-27 02:24:30,988 | INFO     | all job control threads have been joined
[2025-11-26 21:25:18] 2025-11-27 02:24:31,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:25:18] 2025-11-27 02:24:31,714 | INFO     | all data control threads have been joined
[2025-11-26 21:25:18] 2025-11-27 02:24:31,823 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:31,823 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:31,823 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:31,977 | INFO     | all payload control threads have been joined
[2025-11-26 21:25:18] 2025-11-27 02:24:31,992 | INFO     | [job] control thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,039 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,315 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,508 | INFO     | [job] validate thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,527 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,716 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,720 | INFO     | [data] control thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,742 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:32,982 | INFO     | [payload] control thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:33,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:33,564 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:24:34,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:25:18] 2025-11-27 02:24:38,238 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:25:18] 2025-11-27 02:25:01,980 | INFO     | PID=1970993 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:25:18] 2025-11-27 02:25:01,981 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:25:18] 2025-11-27 02:25:01,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:25:18] 2025-11-27 02:25:01,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:25:18] 2025-11-27 02:25:11,046 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:25:18] 2025-11-27 02:25:13,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139719390877504)>', '<ExcThread(monitor, started 139718507362048)>']
[2025-11-26 21:25:18] 2025-11-27 02:25:14,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:25:18] 2025-11-27 02:25:14,042 | INFO     | [monitor] control thread has ended
[2025-11-26 21:25:18] 2025-11-27 02:25:18,070 | INFO     | all workflow threads have been joined
[2025-11-26 21:25:18] 2025-11-27 02:25:18,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:25:18] 2025-11-27 02:25:18,071 | INFO     | traces error code: 0
[2025-11-26 21:25:18] 2025-11-27 02:25:18,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:25:18] 2025-11-27 02:25:18,135 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:25:18] 2025-11-27 02:25:18,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:25:18] 2025-11-27 02:25:18,138 [wrapper] pilotpid: 1970993
[2025-11-26 21:25:18] 2025-11-27 02:25:18,140 [wrapper] Pilot exit status: 0
[2025-11-26 21:25:18] 2025-11-27 02:25:18,145 [wrapper] pandaids: 6896922923
[2025-11-26 21:25:18] 2025-11-27 02:25:18,172 [wrapper] cleanup supervisor_pilot 2367367 1970994
[2025-11-26 21:25:18] 2025-11-27 02:25:18,174 [wrapper] Test setup, not cleaning
[2025-11-26 21:25:18] 2025-11-27 02:25:18,176 [wrapper] apfmon messages muted
[2025-11-26 21:25:18] 2025-11-27 02:25:18,177 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:25:18] 2025-11-27 02:25:18,178 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:25:18]  *** Error codes and diagnostics ***
[2025-11-26 21:25:18]     "exeErrorCode": 0,
[2025-11-26 21:25:18]     "exeErrorDiag": "",
[2025-11-26 21:25:18]     "pilotErrorCode": 0,
[2025-11-26 21:25:18]     "pilotErrorDiag": "",
[2025-11-26 21:25:18]  *** Listing of results directory ***
[2025-11-26 21:25:18] total 1317384
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc      5112 Nov 25 06:12 queuedata.json
[2025-11-26 21:25:18] -rwx------ 1 boinc boinc     36292 Nov 25 06:13 runpilot2-wrapper.sh
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc       100 Nov 26 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:25:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 16:32 run_atlas
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc       105 Nov 26 16:32 job.xml
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc 409768421 Nov 26 16:32 EVNT.47483658._002144.pool.root.1
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc    611289 Nov 26 16:32 input.tar.gz
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:32 start_atlas.sh
[2025-11-26 21:25:18] drwxrwx--x 1 boinc boinc        76 Nov 26 16:32 shared
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:32 boinc_setup_complete
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:32 boinc_lockfile
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc      2784 Nov 26 16:32 pandaJob.out
[2025-11-26 21:25:18] -rw------- 1 boinc boinc    991538 Nov 26 16:32 agis_schedconf.cvmfs.json
[2025-11-26 21:25:18] drwx------ 1 boinc boinc       564 Nov 26 16:32 pilot3
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc      9267 Nov 26 19:53 init_data.xml
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc       533 Nov 26 21:18 boinc_task_state.xml
[2025-11-26 21:25:18] -rw------- 1 boinc boinc 926208787 Nov 26 21:23 HITS.47556161._001276.pool.root.1
[2025-11-26 21:25:18] -rw------- 1 boinc boinc      1050 Nov 26 21:24 memory_monitor_summary.json
[2025-11-26 21:25:18] -rw------- 1 boinc boinc   1516240 Nov 26 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:25:18] -rw------- 1 boinc boinc   2088406 Nov 26 21:24 log.47556161._001276.job.log.tgz.1
[2025-11-26 21:25:18] -rw------- 1 boinc boinc      8648 Nov 26 21:24 heartbeat.json
[2025-11-26 21:25:18] -rw------- 1 boinc boinc        95 Nov 26 21:25 pilot_heartbeat.json
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc        29 Nov 26 21:25 wrapper_checkpoint.txt
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc      8192 Nov 26 21:25 boinc_mmap_file
[2025-11-26 21:25:18] -rw------- 1 boinc boinc      4749 Nov 26 21:25 pilotlog.txt
[2025-11-26 21:25:18] -rw------- 1 boinc boinc   2447944 Nov 26 21:25 log.47556161._001276.job.log.1
[2025-11-26 21:25:18] -rw------- 1 boinc boinc       353 Nov 26 21:25 output.list
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc       620 Nov 26 21:25 runtime_log
[2025-11-26 21:25:18] -rw------- 1 boinc boinc   4556800 Nov 26 21:25 result.tar.gz
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc      8905 Nov 26 21:25 runtime_log.err
[2025-11-26 21:25:18] -rw------- 1 boinc boinc       681 Nov 26 21:25 DIrNDmSA6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbRJKDm7L8cpn.diag
[2025-11-26 21:25:18] -rw-r--r-- 1 boinc boinc     21655 Nov 26 21:25 stderr.txt
[2025-11-26 21:25:18] HITS file was successfully produced:
[2025-11-26 21:25:18] -rw------- 1 boinc boinc 926208787 Nov 26 21:23 shared/HITS.pool.root.1
[2025-11-26 21:25:18]  *** Contents of shared directory: ***
[2025-11-26 21:25:18] total 1309740
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc 409768421 Nov 26 16:32 ATLAS.root_0
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc    611289 Nov 26 16:32 input.tar.gz
[2025-11-26 21:25:18] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:32 start_atlas.sh
[2025-11-26 21:25:18] -rw------- 1 boinc boinc 926208787 Nov 26 21:23 HITS.pool.root.1
[2025-11-26 21:25:18] -rw------- 1 boinc boinc   4556800 Nov 26 21:25 result.tar.gz
21:25:19 (1966185): run_atlas exited; CPU time 203847.786265
21:25:19 (1966185): called boinc_finish(0)

</stderr_txt>
]]>

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