Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:29:12 (30776): wrapper (7.7.26015): starting
01:29:12 (30776): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:29:12] Arguments: --nthreads 8
[2025-11-27 01:29:12] Threads: 8
[2025-11-27 01:29:12] Checking for CVMFS
[2025-11-27 01:29:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:29:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:29:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:29:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:29:12] 2.11.0.0 8101 66393 103248 153341 0 18 4092783 4096000 917 130560 1 3554203 99.366 4651847 533 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:29:12] CVMFS is ok
[2025-11-27 01:29:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:29:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:29:12] Further information can be found at the LHC@home message board.
[2025-11-27 01:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:29:12] Checking for apptainer binary...
[2025-11-27 01:29:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:29:12] apptainer is not installed, using version from CVMFS
[2025-11-27 01:29:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:29:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_10928008/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node232
[2025-11-27 01:29:12] apptainer works
[2025-11-27 01:29:12] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:29:12] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:29:12] Starting ATLAS job with PandaID=6893856365
[2025-11-27 01:29:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10928008/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:55:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:55:50] 2025-11-27 04:54:40,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:55:50] 2025-11-27 04:54:42,152 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | job 6893856365 has state=finished
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | preparing for final server update for job 6893856365 in state='finished'
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | this job has now completed (state=finished)
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | log transfer has been attempted: DONE
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | job 6893856365 has finished - writing final server update
[2025-11-27 05:55:50] 2025-11-27 04:54:42,490 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 05:55:50] 2025-11-27 04:54:42,491 | INFO     | executing command: lscpu
[2025-11-27 05:55:50] 2025-11-27 04:54:42,520 | INFO     | time since job start (15925s) is within the limit (172800.0s)
[2025-11-27 05:55:50] 2025-11-27 04:54:42,522 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 05:55:50] 2025-11-27 04:54:43,388 | INFO     | monitor loop #1176: job 0:6893856365 is in state 'finished'
[2025-11-27 05:55:50] 2025-11-27 04:54:43,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:55:50] 2025-11-27 04:54:44,525 | INFO     | time since job start (15927s) is within the limit (172800.0s)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,450 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:55:50] 2025-11-27 04:54:45,454 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2919.117296875
[2025-11-27 05:55:50] 2025-11-27 04:54:45,459 | INFO     | using path: /tmp/job_10928008/atlas/pilot/slots/0/PanDA_Pilot-6893856365/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,460 | INFO     | extracted standard info from prmon json
[2025-11-27 05:55:50] 2025-11-27 04:54:45,460 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:55:50] 2025-11-27 04:54:45,460 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:55:50] 2025-11-27 04:54:45,462 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:55:50] 2025-11-27 04:54:45,463 | INFO     | sum of square deviations: 5513070810.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,463 | INFO     | sum of deviations: 1375076468956.0002
[2025-11-27 05:55:50] 2025-11-27 04:54:45,464 | INFO     | mean x: 1764211305.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,464 | INFO     | mean y: 3796416.367816092
[2025-11-27 05:55:50] 2025-11-27 04:54:45,464 | INFO     | intersect: -440027818517.9699
[2025-11-27 05:55:50] 2025-11-27 04:54:45,464 | INFO     | chi2: 9.372742086390947
[2025-11-27 05:55:50] 2025-11-27 04:54:45,464 | INFO     | sum of square deviations: 5202255680.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | sum of deviations: 1396020193218.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | mean x: 1764211152.5
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | mean y: 3806195.21875
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | intersect: -473420520767.1962
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | chi2: 8.601452549519538
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | current chi2=8.601452549519538 (change=8.229070316479822 %)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | right removable region: 255
[2025-11-27 05:55:50] 2025-11-27 04:54:45,465 | INFO     | sum of square deviations: 5202255680.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,466 | INFO     | sum of deviations: 1290934640194.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,466 | INFO     | mean x: 1764211457.5
[2025-11-27 05:55:50] 2025-11-27 04:54:45,466 | INFO     | mean y: 3837519.4375
[2025-11-27 05:55:50] 2025-11-27 04:54:45,466 | INFO     | intersect: -437783503819.75146
[2025-11-27 05:55:50] 2025-11-27 04:54:45,467 | INFO     | chi2: 7.881657555406448
[2025-11-27 05:55:50] 2025-11-27 04:54:45,467 | INFO     | current chi2=7.881657555406448 (change=15.908733188652729 %)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,467 | INFO     | left removable region: 10
[2025-11-27 05:55:50] 2025-11-27 04:54:45,467 | INFO     | sum of square deviations: 4560048290.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | sum of deviations: 1242075700225.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | mean x: 1764211427.0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | mean y: 3861554.7673469386
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | intersect: -480535817891.472
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | chi2: 6.738127870963188
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | current memory leak: 272.38 B/s (using 245 data points, chi2=6.74)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | could have reported an average CPU frequency of 2976 MHz (12 samples)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | ..............................
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | . Timing measurements:
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | . get job = 0 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | . initial setup = 1 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,468 | INFO     | . payload setup = 2 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,469 | INFO     | . stage-in = 0 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,469 | INFO     | . payload execution = 15901 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,469 | INFO     | . stage-out = 1 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,469 | INFO     | . log creation = 0 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,469 | INFO     | ..............................
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | 
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | job summary report
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | --------------------------------------------------
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | PanDA job id: 6893856365
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | task id: 47523449
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | errors: (none)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | pilot state: finished 
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | transexitcode: 0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | exeerrorcode: 0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | exeerrordiag: 
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | exitcode: 0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | exitmsg: OK
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | cpuconsumptiontime: 120207 s
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | nevents: 1000
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | neventsw: 0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | pid: 8976
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | pgrp: 8976
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | corecount: 8
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | event service: False
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | sizes: {0: 2284159, 1: 2284469, 2: 2284731, 11: 2284759, 15907: 2317119, 15909: 2326143, 15912: 2326327, 15915: 2326573}
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | --------------------------------------------------
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | 
[2025-11-27 05:55:50] 2025-11-27 04:54:45,526 | INFO     | executing command: ls -lF /tmp/job_10928008/atlas/pilot/slots/0
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,537 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:55:50] 2025-11-27 04:54:45,537 | INFO     | job 6893856365 has completed (purged errors)
[2025-11-27 05:55:50] 2025-11-27 04:54:45,537 | INFO     | overall cleanup function is called
[2025-11-27 05:55:50] 2025-11-27 04:54:46,544 | INFO     | --- collectZombieJob: --- 10, [8976]
[2025-11-27 05:55:50] 2025-11-27 04:54:46,544 | INFO     | zombie collector waiting for pid 8976
[2025-11-27 05:55:50] 2025-11-27 04:54:46,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:55:50] 2025-11-27 04:54:46,544 | INFO     | collected zombie processes
[2025-11-27 05:55:50] 2025-11-27 04:54:46,544 | INFO     | will attempt to kill all subprocesses of pid=8976
[2025-11-27 05:55:50] 2025-11-27 04:54:46,658 | INFO     | process IDs to be killed: [8976] (in reverse order)
[2025-11-27 05:55:50] 2025-11-27 04:54:46,701 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:55:50] 2025-11-27 04:54:46,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:55:50] 2025-11-27 04:54:46,705 | INFO     | did not find any defunct processes belonging to 8976
[2025-11-27 05:55:50] 2025-11-27 04:54:46,708 | INFO     | did not find any defunct processes belonging to 8976
[2025-11-27 05:55:50] 2025-11-27 04:54:46,709 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:55:50] 2025-11-27 04:54:46,709 | INFO     | ready for new job
[2025-11-27 05:55:50] 2025-11-27 04:54:46,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:55:50] 2025-11-27 04:54:46,710 | INFO     | ***************************************
[2025-11-27 05:55:50] 2025-11-27 04:54:46,710 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:55:50] 2025-11-27 04:54:46,710 | INFO     | ***************************************
[2025-11-27 05:55:50] 2025-11-27 04:54:46,710 | INFO     | 
[2025-11-27 05:55:50] 2025-11-27 04:54:46,725 | INFO     | architecture information:
[2025-11-27 05:55:50] 2025-11-27 04:54:46,725 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:55:50] 2025-11-27 04:54:46,731 | INFO     | cat /etc/os-release:
[2025-11-27 05:55:50] NAME="CentOS Linux"
[2025-11-27 05:55:50] VERSION="7 (Core)"
[2025-11-27 05:55:50] ID="centos"
[2025-11-27 05:55:50] ID_LIKE="rhel fedora"
[2025-11-27 05:55:50] VERSION_ID="7"
[2025-11-27 05:55:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:55:50] ANSI_COLOR="0;31"
[2025-11-27 05:55:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:55:50] HOME_URL="https://www.centos.org/"
[2025-11-27 05:55:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:55:50] 
[2025-11-27 05:55:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:55:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:55:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:55:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:55:50] 
[2025-11-27 05:55:50] 2025-11-27 04:54:46,731 | INFO     | ***************************************
[2025-11-27 05:55:50] 2025-11-27 04:54:47,234 | INFO     | executing command: df -mP /tmp/job_10928008/atlas/pilot/slots/0
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | INFO     | sufficient remaining disk space (217166381056 B)
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | INFO     | update_server=False
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | INFO     | aborting loop
[2025-11-27 05:55:50] 2025-11-27 04:54:47,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:55:50] 2025-11-27 04:54:47,260 | INFO     | all data control threads have been joined
[2025-11-27 05:55:50] 2025-11-27 04:54:47,938 | INFO     | all payload control threads have been joined
[2025-11-27 05:55:50] 2025-11-27 04:54:47,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:55:50] 2025-11-27 04:54:48,062 | INFO     | all job control threads have been joined
[2025-11-27 05:55:50] 2025-11-27 04:54:48,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:55:50] 2025-11-27 04:54:48,245 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,245 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,246 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,266 | INFO     | [data] control thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,391 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,391 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,399 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,424 | INFO     | [job] validate thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,450 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,749 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:48,944 | INFO     | [payload] control thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:49,067 | INFO     | [job] control thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:49,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:49,957 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:52,209 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:54:57,443 | INFO     | job.realtimelogging is not enabled
[2025-11-27 05:55:50] 2025-11-27 04:54:58,448 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:55:50] 2025-11-27 04:55:17,727 | INFO     | PID=2297 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 05:55:50] 2025-11-27 04:55:17,727 | INFO     | .. there are 7 such processes running
[2025-11-27 05:55:50] 2025-11-27 04:55:17,727 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:55:50] 2025-11-27 04:55:17,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:55:50] 2025-11-27 04:55:17,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:55:50] 2025-11-27 04:55:43,902 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:55:50] 2025-11-27 04:55:45,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-27 05:55:50] 2025-11-27 04:55:45,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:55:50] 2025-11-27 04:55:45,867 | INFO     | [monitor] control thread has ended
[2025-11-27 05:55:50] 2025-11-27 04:55:50,523 | INFO     | all workflow threads have been joined
[2025-11-27 05:55:50] 2025-11-27 04:55:50,523 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:55:50] 2025-11-27 04:55:50,523 | INFO     | traces error code: 0
[2025-11-27 05:55:50] 2025-11-27 04:55:50,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:55:50] 2025-11-27 04:55:50,576 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:55:50] 2025-11-27 04:55:50,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:55:50] 2025-11-27 04:55:50,579 [wrapper] pilotpid: 2297
[2025-11-27 05:55:50] 2025-11-27 04:55:50,580 [wrapper] Pilot exit status: 0
[2025-11-27 05:55:50] 2025-11-27 04:55:50,584 [wrapper] pandaids: 6893856365
[2025-11-27 05:55:50] 2025-11-27 04:55:50,609 [wrapper] cleanup supervisor_pilot 19777 2298
[2025-11-27 05:55:50] 2025-11-27 04:55:50,611 [wrapper] Test setup, not cleaning
[2025-11-27 05:55:50] 2025-11-27 04:55:50,612 [wrapper] apfmon messages muted
[2025-11-27 05:55:50] 2025-11-27 04:55:50,613 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:55:50] 2025-11-27 04:55:50,614 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:55:50]  *** Error codes and diagnostics ***
[2025-11-27 05:55:50]     "exeErrorCode": 0,
[2025-11-27 05:55:50]     "exeErrorDiag": "",
[2025-11-27 05:55:50]     "pilotErrorCode": 0,
[2025-11-27 05:55:50]     "pilotErrorDiag": "",
[2025-11-27 05:55:50]  *** Listing of results directory ***
[2025-11-27 05:55:50] total 1302388
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-27 05:55:50] -rwx------ 1 mf493845 unix-user     36292 Nov 20 13:49 runpilot2-wrapper.sh
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      5112 Nov 20 13:49 queuedata.json
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user       100 Nov 26 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:55:50] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:45 run_atlas
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user       105 Nov 26 23:45 job.xml
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 27 01:29 input.tar.gz
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user 408292867 Nov 27 01:29 EVNT.47493127._000461.pool.root.1
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:29 start_atlas.sh
[2025-11-27 05:55:50] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:29 shared
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      6392 Nov 27 01:29 init_data.xml
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user         0 Nov 27 01:29 boinc_setup_complete
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:29 boinc_mmap_file
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user         0 Nov 27 01:29 boinc_lockfile
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      2786 Nov 27 01:29 pandaJob.out
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user    991546 Nov 27 01:29 agis_schedconf.cvmfs.json
[2025-11-27 05:55:50] drwx------ 5 mf493845 unix-user       440 Nov 27 01:29 pilot3
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user 913721026 Nov 27 05:54 HITS.47523449._004609.pool.root.1
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      1025 Nov 27 05:54 memory_monitor_summary.json
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user   1561521 Nov 27 05:54 log.47523449._004609.job.log.tgz.1
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      8603 Nov 27 05:54 heartbeat.json
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user        95 Nov 27 05:55 pilot_heartbeat.json
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      4906 Nov 27 05:55 pilotlog.txt
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user   2306498 Nov 27 05:55 log.47523449._004609.job.log.1
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user       353 Nov 27 05:55 output.list
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user       620 Nov 27 05:55 runtime_log
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user   3891200 Nov 27 05:55 result.tar.gz
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user       651 Nov 27 05:55 xjPMDmcHJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaeGKDmGvdwdm.diag
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:55 runtime_log.err
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user     22190 Nov 27 05:55 stderr.txt
[2025-11-27 05:55:50] HITS file was successfully produced:
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user 913721026 Nov 27 05:54 shared/HITS.pool.root.1
[2025-11-27 05:55:50]  *** Contents of shared directory: ***
[2025-11-27 05:55:50] total 1295428
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user    590098 Nov 27 01:29 input.tar.gz
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user 408292867 Nov 27 01:29 ATLAS.root_0
[2025-11-27 05:55:50] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:29 start_atlas.sh
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user 913721026 Nov 27 05:54 HITS.pool.root.1
[2025-11-27 05:55:50] -rw------- 1 mf493845 unix-user   3891200 Nov 27 05:55 result.tar.gz
05:55:51 (30776): run_atlas exited; CPU time 120414.262888
05:55:51 (30776): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN