Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:44 (1240994): wrapper (7.7.26015): starting
16:14:44 (1240994): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:14:44] Arguments: --nthreads 8
[2025-11-26 16:14:44] Threads: 8
[2025-11-26 16:14:44] Checking for CVMFS
[2025-11-26 16:14:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:14:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:14:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:14:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:14:45] 2.13.3.0 9358 28882 236044 153334 1 471 19495419 32935937 27659 16776704 0 152591790 99.774 86172646 32707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:14:45] CVMFS is ok
[2025-11-26 16:14:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:14:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:14:45] Further information can be found at the LHC@home message board.
[2025-11-26 16:14:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:14:45] Checking for apptainer binary...
[2025-11-26 16:14:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:14:45] Running /usr/bin/apptainer --version
[2025-11-26 16:14:45] apptainer version 1.4.4-1.el9
[2025-11-26 16:14:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:14:45] c-6-6.aglt2.org
[2025-11-26 16:14:45] apptainer works
[2025-11-26 16:14:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:14:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:14:46] Starting ATLAS job with PandaID=6893856395
[2025-11-26 16:14:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:17:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:17:38] 2025-11-27 17:16:44,428 | INFO     | time since job start (72085s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:46,489 | INFO     | time since job start (72087s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:46,679 | INFO     | monitor loop #4295: job 0:6893856395 is in state 'finished'
[2025-11-27 12:17:38] 2025-11-27 17:16:46,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:38] 2025-11-27 17:16:48,573 | INFO     | time since job start (72089s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:49,188 | INFO     | monitor loop #4296: job 0:6893856395 is in state 'finished'
[2025-11-27 12:17:38] 2025-11-27 17:16:49,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:38] 2025-11-27 17:16:50,585 | INFO     | time since job start (72091s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:51,717 | INFO     | monitor loop #4297: job 0:6893856395 is in state 'finished'
[2025-11-27 12:17:38] 2025-11-27 17:16:51,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:38] 2025-11-27 17:16:52,595 | INFO     | time since job start (72093s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:54,238 | INFO     | monitor loop #4298: job 0:6893856395 is in state 'finished'
[2025-11-27 12:17:38] 2025-11-27 17:16:54,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:38] 2025-11-27 17:16:54,654 | INFO     | time since job start (72095s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:56,641 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:17:38] 2025-11-27 17:16:56,661 | INFO     | time since job start (72097s) is within the limit (172800.0s)
[2025-11-27 12:17:38] 2025-11-27 17:16:56,669 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.182
[2025-11-27 12:17:38] 2025-11-27 17:16:56,680 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893856395/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:17:38] 2025-11-27 17:16:56,685 | INFO     | extracted standard info from prmon json
[2025-11-27 12:17:38] 2025-11-27 17:16:56,685 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:17:38] 2025-11-27 17:16:56,685 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:17:38] 2025-11-27 17:16:56,727 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:17:38] 2025-11-27 17:16:56,733 | INFO     | sum of square deviations: 509492358773.9817
[2025-11-27 12:17:38] 2025-11-27 17:16:56,797 | INFO     | monitor loop #4299: job 0:6893856395 is in state 'finished'
[2025-11-27 12:17:38] 2025-11-27 17:16:56,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:17:38] 2025-11-27 17:16:56,832 | INFO     | sum of deviations: 623113267912.7008
[2025-11-27 12:17:38] 2025-11-27 17:16:56,832 | INFO     | mean x: 1764227741.9347458
[2025-11-27 12:17:38] 2025-11-27 17:16:56,832 | INFO     | mean y: 2944105.138983051
[2025-11-27 12:17:38] 2025-11-27 17:16:56,832 | INFO     | intersect: -2154720665.858841
[2025-11-27 12:17:38] 2025-11-27 17:16:56,834 | INFO     | chi2: 21.96458337809252
[2025-11-27 12:17:38] 2025-11-27 17:16:56,848 | INFO     | sum of square deviations: 503043879793.6391
[2025-11-27 12:17:38] 2025-11-27 17:16:56,917 | INFO     | sum of deviations: 1031760469892.684
[2025-11-27 12:17:38] 2025-11-27 17:16:56,917 | INFO     | mean x: 1764227589.440851
[2025-11-27 12:17:38] 2025-11-27 17:16:56,918 | INFO     | mean y: 2953767.0025531915
[2025-11-27 12:17:38] 2025-11-27 17:16:56,918 | INFO     | intersect: -3615538296.6039953
[2025-11-27 12:17:38] 2025-11-27 17:16:56,919 | INFO     | chi2: 18.54610119159049
[2025-11-27 12:17:38] 2025-11-27 17:16:56,919 | INFO     | current chi2=18.54610119159049 (change=15.563610416173992 %)
[2025-11-27 12:17:38] 2025-11-27 17:16:56,920 | INFO     | right removable region: 1174
[2025-11-27 12:17:38] 2025-11-27 17:16:56,924 | INFO     | sum of square deviations: 503042847063.6388
[2025-11-27 12:17:38] 2025-11-27 17:16:57,005 | INFO     | sum of deviations: 213241364912.75464
[2025-11-27 12:17:38] 2025-11-27 17:16:57,005 | INFO     | mean x: 1764227894.440851
[2025-11-27 12:17:38] 2025-11-27 17:16:57,005 | INFO     | mean y: 2953792.1259574466
[2025-11-27 12:17:38] 2025-11-27 17:16:57,005 | INFO     | intersect: -744907680.1595818
[2025-11-27 12:17:38] 2025-11-27 17:16:57,007 | INFO     | chi2: 18.99545099044111
[2025-11-27 12:17:38] 2025-11-27 17:16:57,007 | INFO     | current chi2=18.99545099044111 (change=13.517817918699167 %)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,007 | INFO     | left removable region: 10
[2025-11-27 12:17:38] 2025-11-27 17:16:57,013 | INFO     | sum of square deviations: 489047351206.40234
[2025-11-27 12:17:38] 2025-11-27 17:16:57,084 | INFO     | sum of deviations: 585046841877.7273
[2025-11-27 12:17:38] 2025-11-27 17:16:57,089 | INFO     | mean x: 1764227863.9527493
[2025-11-27 12:17:38] 2025-11-27 17:16:57,089 | INFO     | mean y: 2967945.52233677
[2025-11-27 12:17:38] 2025-11-27 17:16:57,089 | INFO     | intersect: -2107576028.618571
[2025-11-27 12:17:38] 2025-11-27 17:16:57,091 | INFO     | chi2: 14.802436250284462
[2025-11-27 12:17:38] 2025-11-27 17:16:57,091 | INFO     | current memory leak: 1.20 B/s (using 1164 data points, chi2=14.80)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,092 | INFO     | could have reported an average CPU frequency of 2600 MHz (43 samples)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,092 | INFO     | ..............................
[2025-11-27 12:17:38] 2025-11-27 17:16:57,092 | INFO     | . Timing measurements:
[2025-11-27 12:17:38] 2025-11-27 17:16:57,092 | INFO     | . get job = 0 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . initial setup = 3 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . payload setup = 13 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . stage-in = 0 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . payload execution = 71982 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . stage-out = 13 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | . log creation = 4 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,097 | INFO     | ..............................
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | 
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | job summary report
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | --------------------------------------------------
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | PanDA job id: 6893856395
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | task id: 47523449
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | errors: (none)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | pilot state: finished 
[2025-11-27 12:17:38] 2025-11-27 17:16:57,662 | INFO     | transexitcode: 0
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | exeerrorcode: 0
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | exeerrordiag: 
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | exitcode: 0
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | exitmsg: OK
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | cpuconsumptiontime: 289094 s
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | nevents: 1000
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | neventsw: 0
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | pid: 1254991
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | pgrp: 1254991
[2025-11-27 12:17:38] 2025-11-27 17:16:57,663 | INFO     | corecount: 8
[2025-11-27 12:17:38] 2025-11-27 17:16:57,664 | INFO     | event service: False
[2025-11-27 12:17:38] 2025-11-27 17:16:57,664 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 13: 2284371, 18: 2284689, 23: 2284717, 72001: 2343085, 72003: 2343084, 72016: 2352134, 72019: 2352190, 72062: 2352436}
[2025-11-27 12:17:38] 2025-11-27 17:16:57,664 | INFO     | --------------------------------------------------
[2025-11-27 12:17:38] 2025-11-27 17:16:57,664 | INFO     | 
[2025-11-27 12:17:38] 2025-11-27 17:16:57,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:17:38] 2025-11-27 17:16:57,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,834 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | job 6893856395 has completed (purged errors)
[2025-11-27 12:17:38] 2025-11-27 17:16:57,835 | INFO     | overall cleanup function is called
[2025-11-27 12:17:38] 2025-11-27 17:16:58,907 | INFO     | --- collectZombieJob: --- 10, [1254991]
[2025-11-27 12:17:38] 2025-11-27 17:16:58,907 | INFO     | zombie collector waiting for pid 1254991
[2025-11-27 12:17:38] 2025-11-27 17:16:58,907 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:17:38] 2025-11-27 17:16:58,907 | INFO     | collected zombie processes
[2025-11-27 12:17:38] 2025-11-27 17:16:58,907 | INFO     | will attempt to kill all subprocesses of pid=1254991
[2025-11-27 12:17:38] 2025-11-27 17:17:00,629 | INFO     | process IDs to be killed: [1254991] (in reverse order)
[2025-11-27 12:17:38] 2025-11-27 17:17:01,551 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:17:38] 2025-11-27 17:17:01,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:17:38] 2025-11-27 17:17:01,669 | INFO     | did not find any defunct processes belonging to 1254991
[2025-11-27 12:17:38] 2025-11-27 17:17:01,738 | INFO     | did not find any defunct processes belonging to 1254991
[2025-11-27 12:17:38] 2025-11-27 17:17:01,757 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:17:38] 2025-11-27 17:17:01,757 | INFO     | ready for new job
[2025-11-27 12:17:38] 2025-11-27 17:17:01,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:17:38] 2025-11-27 17:17:01,775 | INFO     | ***************************************
[2025-11-27 12:17:38] 2025-11-27 17:17:01,775 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:17:38] 2025-11-27 17:17:01,775 | INFO     | ***************************************
[2025-11-27 12:17:38] 2025-11-27 17:17:01,775 | INFO     | 
[2025-11-27 12:17:38] 2025-11-27 17:17:01,785 | INFO     | architecture information:
[2025-11-27 12:17:38] 2025-11-27 17:17:01,796 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:17:38] 2025-11-27 17:17:01,902 | INFO     | cat /etc/os-release:
[2025-11-27 12:17:38] NAME="CentOS Linux"
[2025-11-27 12:17:38] VERSION="7 (Core)"
[2025-11-27 12:17:38] ID="centos"
[2025-11-27 12:17:38] ID_LIKE="rhel fedora"
[2025-11-27 12:17:38] VERSION_ID="7"
[2025-11-27 12:17:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:17:38] ANSI_COLOR="0;31"
[2025-11-27 12:17:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:17:38] HOME_URL="https://www.centos.org/"
[2025-11-27 12:17:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:17:38] 
[2025-11-27 12:17:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:17:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:17:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:17:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:17:38] 
[2025-11-27 12:17:38] 2025-11-27 17:17:01,902 | INFO     | ***************************************
[2025-11-27 12:17:38] 2025-11-27 17:17:02,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:17:38] 2025-11-27 17:17:02,608 | INFO     | sufficient remaining disk space (70596427776 B)
[2025-11-27 12:17:38] 2025-11-27 17:17:02,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:17:38] 2025-11-27 17:17:02,612 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:17:38] 2025-11-27 17:17:02,612 | INFO     | update_server=False
[2025-11-27 12:17:38] 2025-11-27 17:17:02,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:17:38] 2025-11-27 17:17:02,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:17:38] 2025-11-27 17:17:02,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:17:38] 2025-11-27 17:17:02,781 | INFO     | all data control threads have been joined
[2025-11-27 12:17:38] 2025-11-27 17:17:02,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:17:38] 2025-11-27 17:17:02,855 | INFO     | aborting loop
[2025-11-27 12:17:38] 2025-11-27 17:17:03,625 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,666 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,683 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,786 | INFO     | [data] control thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,813 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:03,844 | INFO     | all job control threads have been joined
[2025-11-27 12:17:38] 2025-11-27 17:17:03,868 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,086 | INFO     | all payload control threads have been joined
[2025-11-27 12:17:38] 2025-11-27 17:17:04,204 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,263 | INFO     | [job] validate thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,280 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,623 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:04,851 | INFO     | [job] control thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:05,093 | INFO     | [payload] control thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:05,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:17:38] 2025-11-27 17:17:09,300 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:17:38] 2025-11-27 17:17:30,223 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:17:38] 2025-11-27 17:17:30,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140417028085568)>', '<ExcThread(monitor, started 140416104003328)>']
[2025-11-27 12:17:38] 2025-11-27 17:17:35,936 | INFO     | PID=1247128 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:17:38] 2025-11-27 17:17:35,937 | INFO     | .. there are 43 such processes running
[2025-11-27 12:17:38] 2025-11-27 17:17:35,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:17:38] 2025-11-27 17:17:35,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:17:38] 2025-11-27 17:17:35,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:17:38] 2025-11-27 17:17:35,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:17:38] 2025-11-27 17:17:35,939 | INFO     | [monitor] control thread has ended
[2025-11-27 12:17:38] 2025-11-27 17:17:36,018 | INFO     | all workflow threads have been joined
[2025-11-27 12:17:38] 2025-11-27 17:17:36,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:17:38] 2025-11-27 17:17:36,018 | INFO     | traces error code: 0
[2025-11-27 12:17:38] 2025-11-27 17:17:36,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:17:38] 2025-11-27 17:17:37,065 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:17:38] 2025-11-27 17:17:37,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:17:38] 2025-11-27 17:17:37,196 [wrapper] pilotpid: 1247128
[2025-11-27 12:17:38] 2025-11-27 17:17:37,224 [wrapper] Pilot exit status: 0
[2025-11-27 12:17:38] 2025-11-27 17:17:37,384 [wrapper] pandaids: 6893856395
[2025-11-27 12:17:38] 2025-11-27 17:17:37,745 [wrapper] cleanup supervisor_pilot 1341456 1247129
[2025-11-27 12:17:38] 2025-11-27 17:17:37,750 [wrapper] Test setup, not cleaning
[2025-11-27 12:17:38] 2025-11-27 17:17:37,754 [wrapper] apfmon messages muted
[2025-11-27 12:17:38] 2025-11-27 17:17:37,758 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:17:38] 2025-11-27 17:17:37,762 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:17:38]  *** Error codes and diagnostics ***
[2025-11-27 12:17:38]     "exeErrorCode": 0,
[2025-11-27 12:17:38]     "exeErrorDiag": "",
[2025-11-27 12:17:38]     "pilotErrorCode": 0,
[2025-11-27 12:17:38]     "pilotErrorDiag": "",
[2025-11-27 12:17:38]  *** Listing of results directory ***
[2025-11-27 12:17:38] total 1302960
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 07:49 queuedata.json
[2025-11-27 12:17:38] -rwx------. 1 boincer umatlas     36292 Nov 20 07:50 runpilot2-wrapper.sh
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:17:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:14 run_atlas
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:14 job.xml
[2025-11-27 12:17:38] -rw-r--r--. 2 boincer umatlas 409561032 Nov 26 16:14 EVNT.47493127._000464.pool.root.1
[2025-11-27 12:17:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:14 start_atlas.sh
[2025-11-27 12:17:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:14 shared
[2025-11-27 12:17:38] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 16:14 input.tar.gz
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:14 boinc_lockfile
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:14 pandaJob.out
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas        57 Nov 26 16:14 setup.sh.local
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas    991538 Nov 26 16:15 agis_schedconf.cvmfs.json
[2025-11-27 12:17:38] drwx------. 5 boincer umatlas      4096 Nov 26 16:15 pilot3
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:38 boinc_task_state.xml
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas      6660 Nov 27 12:10 init_data.xml
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas 898135009 Nov 27 12:14 HITS.47523449._004639.pool.root.1
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas      1065 Nov 27 12:15 memory_monitor_summary.json
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas   2273005 Nov 27 12:16 log.47523449._004639.job.log.tgz.1
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas      8622 Nov 27 12:16 heartbeat.json
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:17 boinc_mmap_file
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:17 wrapper_checkpoint.txt
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas        95 Nov 27 12:17 pilot_heartbeat.json
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas      4824 Nov 27 12:17 pilotlog.txt
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas   9032738 Nov 27 12:17 log.47523449._004639.job.log.1
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas       353 Nov 27 12:17 output.list
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:17 runtime_log
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas  11325440 Nov 27 12:17 result.tar.gz
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas      9328 Nov 27 12:17 runtime_log.err
[2025-11-27 12:17:38] -rw-------. 1 boincer umatlas       658 Nov 27 12:17 nBXNDmbIJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTqHKDmMz1Wnm.diag
[2025-11-27 12:17:38] -rw-r--r--. 1 boincer umatlas     21800 Nov 27 12:17 stderr.txt
[2025-11-27 12:17:38] HITS file was successfully produced:
[2025-11-27 12:17:39] -rw-------. 1 boincer umatlas 898135009 Nov 27 12:14 shared/HITS.pool.root.1
[2025-11-27 12:17:39]  *** Contents of shared directory: ***
[2025-11-27 12:17:39] total 1288716
[2025-11-27 12:17:39] -rw-r--r--. 2 boincer umatlas 409561032 Nov 26 16:14 ATLAS.root_0
[2025-11-27 12:17:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:14 start_atlas.sh
[2025-11-27 12:17:39] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 16:14 input.tar.gz
[2025-11-27 12:17:39] -rw-------. 1 boincer umatlas 898135009 Nov 27 12:14 HITS.pool.root.1
[2025-11-27 12:17:39] -rw-------. 1 boincer umatlas  11325440 Nov 27 12:17 result.tar.gz
12:17:40 (1240994): run_atlas exited; CPU time 291406.384773
12:17:40 (1240994): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN