Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:32:56 (19930): wrapper (7.7.26015): starting
01:32:56 (19930): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:32:56] Arguments: --nthreads 8
[2025-11-27 01:32:56] Threads: 8
[2025-11-27 01:32:56] Checking for CVMFS
[2025-11-27 01:32:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:32:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:32:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:32:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:32:56] 2.11.0.0 9260 66551 89356 153341 3 19 3030800 4096001 232 130560 1 4629563 99.605 4495519 513 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:32:56] CVMFS is ok
[2025-11-27 01:32:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:32:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:32:56] Further information can be found at the LHC@home message board.
[2025-11-27 01:32:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:32:56] Checking for apptainer binary...
[2025-11-27 01:32:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:32:56] apptainer is not installed, using version from CVMFS
[2025-11-27 01:32:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:32:56] WARNING: Environment variable TMPDIR already has value [/tmp/job_10928058/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node193
[2025-11-27 01:32:56] apptainer works
[2025-11-27 01:32:58] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:32:58] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:32:58] Starting ATLAS job with PandaID=6896219690
[2025-11-27 01:32:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10928058/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:00:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:00:51] 2025-11-27 05:00:17,941 | INFO     | using path: /tmp/job_10928058/atlas/pilot/slots/0/PanDA_Pilot-6896219690/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:00:51] 2025-11-27 05:00:18,050 | INFO     | number of running child processes to parent process 11061: 1
[2025-11-27 06:00:51] 2025-11-27 05:00:18,050 | INFO     | maximum number of monitored processes: 16
[2025-11-27 06:00:51] 2025-11-27 05:00:19,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:00:51] 2025-11-27 05:00:19,424 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2615.1197968750002
[2025-11-27 06:00:51] 2025-11-27 05:00:19,429 | INFO     | using path: /tmp/job_10928058/atlas/pilot/slots/0/PanDA_Pilot-6896219690/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,429 | INFO     | extracted standard info from prmon json
[2025-11-27 06:00:51] 2025-11-27 05:00:19,429 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:00:51] 2025-11-27 05:00:19,429 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:00:51] 2025-11-27 05:00:19,432 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:00:51] 2025-11-27 05:00:19,432 | INFO     | sum of square deviations: 5640782972.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | sum of deviations: 127589090474.00003
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | mean x: 1764211592.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | mean y: 2903200.6159695815
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | intersect: -39901867740.63478
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | chi2: 2.9352200439632976
[2025-11-27 06:00:51] 2025-11-27 05:00:19,433 | INFO     | sum of square deviations: 5325139844.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,434 | INFO     | sum of deviations: 175290738930.99997
[2025-11-27 06:00:51] 2025-11-27 05:00:19,434 | INFO     | mean x: 1764211439.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,434 | INFO     | mean y: 2926064.2093023257
[2025-11-27 06:00:51] 2025-11-27 05:00:19,434 | INFO     | intersect: -58070652450.33109
[2025-11-27 06:00:51] 2025-11-27 05:00:19,435 | INFO     | chi2: 1.4667691038073234
[2025-11-27 06:00:51] 2025-11-27 05:00:19,435 | INFO     | current chi2=1.4667691038073234 (change=50.0286492379355 %)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,435 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | sum of deviations: 169292801996.00003
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | mean x: 1764211287.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | mean y: 2923051.015810277
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | intersect: -59475012620.14354
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | chi2: 1.4636221891909273
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | current chi2=1.4636221891909273 (change=0.21454737546813155 %)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | right removable region: 252
[2025-11-27 06:00:51] 2025-11-27 05:00:19,436 | INFO     | sum of square deviations: 5325139844.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,437 | INFO     | sum of deviations: 77517219825.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,437 | INFO     | mean x: 1764211744.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,437 | INFO     | mean y: 2927210.802325581
[2025-11-27 06:00:51] 2025-11-27 05:00:19,437 | INFO     | intersect: -25678424567.85242
[2025-11-27 06:00:51] 2025-11-27 05:00:19,437 | INFO     | chi2: 1.5460232417619206
[2025-11-27 06:00:51] 2025-11-27 05:00:19,438 | INFO     | current chi2=1.5460232417619206 (change=47.32854032727325 %)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,438 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | sum of deviations: 64638353418.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | mean x: 1764211897.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | mean y: 2933674.0118577075
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | intersect: -22706579728.00312
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | chi2: 1.523144500534206
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | current chi2=1.523144500534206 (change=1.4798445851073383 %)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | left removable region: 20
[2025-11-27 06:00:51] 2025-11-27 05:00:19,439 | INFO     | sum of square deviations: 3871990738.0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | sum of deviations: 85982661691.00003
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | mean x: 1764211866.5
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | mean y: 2966853.7413793104
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | intersect: -39173684727.52519
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | chi2: 0.025109069790441807
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | current memory leak: 22.21 B/s (using 232 data points, chi2=0.03)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | could have reported an average CPU frequency of 3008 MHz (12 samples)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,440 | INFO     | ..............................
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . Timing measurements:
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . get job = 0 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . initial setup = 1 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . payload setup = 2 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . stage-in = 0 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . payload execution = 16009 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . stage-out = 1 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | . log creation = 0 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,441 | INFO     | ..............................
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | 
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | job summary report
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | --------------------------------------------------
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | PanDA job id: 6896219690
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | task id: 47556149
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | errors: (none)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | pilot state: finished 
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | transexitcode: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | exeerrorcode: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | exeerrordiag: 
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | exitcode: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | exitmsg: OK
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | cpuconsumptiontime: 121316 s
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | nevents: 1000
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | neventsw: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | pid: 11061
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | pgrp: 11061
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | corecount: 8
[2025-11-27 06:00:51] 2025-11-27 05:00:19,490 | INFO     | event service: False
[2025-11-27 06:00:51] 2025-11-27 05:00:19,491 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 16015: 2317036, 16018: 2326060, 16020: 2326116, 16023: 2326490}
[2025-11-27 06:00:51] 2025-11-27 05:00:19,491 | INFO     | --------------------------------------------------
[2025-11-27 06:00:51] 2025-11-27 05:00:19,491 | INFO     | 
[2025-11-27 06:00:51] 2025-11-27 05:00:19,491 | INFO     | executing command: ls -lF /tmp/job_10928058/atlas/pilot/slots/0
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | job 6896219690 has completed (purged errors)
[2025-11-27 06:00:51] 2025-11-27 05:00:19,501 | INFO     | overall cleanup function is called
[2025-11-27 06:00:51] 2025-11-27 05:00:20,508 | INFO     | --- collectZombieJob: --- 10, [11061]
[2025-11-27 06:00:51] 2025-11-27 05:00:20,509 | INFO     | zombie collector waiting for pid 11061
[2025-11-27 06:00:51] 2025-11-27 05:00:20,509 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:00:51] 2025-11-27 05:00:20,509 | INFO     | collected zombie processes
[2025-11-27 06:00:51] 2025-11-27 05:00:20,509 | INFO     | will attempt to kill all subprocesses of pid=11061
[2025-11-27 06:00:51] 2025-11-27 05:00:20,617 | INFO     | process IDs to be killed: [11061] (in reverse order)
[2025-11-27 06:00:51] 2025-11-27 05:00:20,659 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:00:51] 2025-11-27 05:00:20,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:00:51] 2025-11-27 05:00:20,663 | INFO     | did not find any defunct processes belonging to 11061
[2025-11-27 06:00:51] 2025-11-27 05:00:20,666 | INFO     | did not find any defunct processes belonging to 11061
[2025-11-27 06:00:51] 2025-11-27 05:00:20,667 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:00:51] 2025-11-27 05:00:20,667 | INFO     | ready for new job
[2025-11-27 06:00:51] 2025-11-27 05:00:20,667 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:00:51] 2025-11-27 05:00:20,668 | INFO     | ***************************************
[2025-11-27 06:00:51] 2025-11-27 05:00:20,668 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:00:51] 2025-11-27 05:00:20,668 | INFO     | ***************************************
[2025-11-27 06:00:51] 2025-11-27 05:00:20,668 | INFO     | 
[2025-11-27 06:00:51] 2025-11-27 05:00:20,682 | INFO     | architecture information:
[2025-11-27 06:00:51] 2025-11-27 05:00:20,682 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:00:51] 2025-11-27 05:00:20,690 | INFO     | cat /etc/os-release:
[2025-11-27 06:00:51] NAME="CentOS Linux"
[2025-11-27 06:00:51] VERSION="7 (Core)"
[2025-11-27 06:00:51] ID="centos"
[2025-11-27 06:00:51] ID_LIKE="rhel fedora"
[2025-11-27 06:00:51] VERSION_ID="7"
[2025-11-27 06:00:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:00:51] ANSI_COLOR="0;31"
[2025-11-27 06:00:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:00:51] HOME_URL="https://www.centos.org/"
[2025-11-27 06:00:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:00:51] 
[2025-11-27 06:00:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:00:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:00:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:00:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:00:51] 
[2025-11-27 06:00:51] 2025-11-27 05:00:20,690 | INFO     | ***************************************
[2025-11-27 06:00:51] 2025-11-27 05:00:21,192 | INFO     | executing command: df -mP /tmp/job_10928058/atlas/pilot/slots/0
[2025-11-27 06:00:51] 2025-11-27 05:00:21,200 | INFO     | sufficient remaining disk space (216490049536 B)
[2025-11-27 06:00:51] 2025-11-27 05:00:21,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:00:51] 2025-11-27 05:00:21,200 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:00:51] 2025-11-27 05:00:21,200 | INFO     | update_server=False
[2025-11-27 06:00:51] 2025-11-27 05:00:21,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:00:51] 2025-11-27 05:00:21,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:00:51] 2025-11-27 05:00:21,213 | INFO     | all data control threads have been joined
[2025-11-27 06:00:51] 2025-11-27 05:00:21,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:00:51] 2025-11-27 05:00:21,558 | INFO     | aborting loop
[2025-11-27 06:00:51] 2025-11-27 05:00:21,604 | INFO     | all job control threads have been joined
[2025-11-27 06:00:51] 2025-11-27 05:00:21,832 | INFO     | all payload control threads have been joined
[2025-11-27 06:00:51] 2025-11-27 05:00:22,206 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,206 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,219 | INFO     | [data] control thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,351 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:00:51] 2025-11-27 05:00:22,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:00:51] 2025-11-27 05:00:22,504 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,563 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,610 | INFO     | [job] control thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:22,838 | INFO     | [payload] control thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:23,201 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:23,264 | INFO     | [job] validate thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:23,312 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:23,499 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:23,576 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:24,468 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:26,424 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:00:51] 2025-11-27 05:00:29,651 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:00:51] 2025-11-27 05:00:30,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-27 06:00:51] 2025-11-27 05:00:35,907 | INFO     | all workflow threads have been joined
[2025-11-27 06:00:51] 2025-11-27 05:00:35,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:00:51] 2025-11-27 05:00:35,908 | INFO     | traces error code: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:35,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | INFO     | PID=5000 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | INFO     | .. there are 5 such processes running
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:00:51] 2025-11-27 05:00:50,970 | INFO     | [monitor] control thread has ended
[2025-11-27 06:00:51] 2025-11-27 05:00:51,027 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:00:51] 2025-11-27 05:00:51,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:00:51] 2025-11-27 05:00:51,030 [wrapper] pilotpid: 5000
[2025-11-27 06:00:51] 2025-11-27 05:00:51,031 [wrapper] Pilot exit status: 0
[2025-11-27 06:00:51] 2025-11-27 05:00:51,035 [wrapper] pandaids: 6896219690
[2025-11-27 06:00:51] 2025-11-27 05:00:51,060 [wrapper] cleanup supervisor_pilot  3354 5002
[2025-11-27 06:00:51] 2025-11-27 05:00:51,061 [wrapper] Test setup, not cleaning
[2025-11-27 06:00:51] 2025-11-27 05:00:51,062 [wrapper] apfmon messages muted
[2025-11-27 06:00:51] 2025-11-27 05:00:51,063 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:00:51] 2025-11-27 05:00:51,065 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:00:51]  *** Error codes and diagnostics ***
[2025-11-27 06:00:51]     "exeErrorCode": 0,
[2025-11-27 06:00:51]     "exeErrorDiag": "",
[2025-11-27 06:00:51]     "pilotErrorCode": 0,
[2025-11-27 06:00:51]     "pilotErrorDiag": "",
[2025-11-27 06:00:51]  *** Listing of results directory ***
[2025-11-27 06:00:51] total 1300540
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user    576529 Nov 24 21:01 pilot3.tar.gz
[2025-11-27 06:00:51] -rwx------ 1 mf493845 unix-user     36292 Nov 24 21:13 runpilot2-wrapper.sh
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      5112 Nov 24 21:13 queuedata.json
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       100 Nov 26 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:00:51] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:48 run_atlas
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       105 Nov 26 23:48 job.xml
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user 408250587 Nov 27 01:32 EVNT.47483658._001416.pool.root.1
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:32 start_atlas.sh
[2025-11-27 06:00:51] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:32 shared
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user    590105 Nov 27 01:32 input.tar.gz
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      6392 Nov 27 01:32 init_data.xml
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user         0 Nov 27 01:32 boinc_setup_complete
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:32 boinc_mmap_file
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user         0 Nov 27 01:32 boinc_lockfile
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      2786 Nov 27 01:32 pandaJob.out
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user    991546 Nov 27 01:33 agis_schedconf.cvmfs.json
[2025-11-27 06:00:51] drwx------ 5 mf493845 unix-user       440 Nov 27 01:33 pilot3
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user 911870269 Nov 27 05:59 HITS.47556149._004029.pool.root.1
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user        95 Nov 27 06:00 pilot_heartbeat.json
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      1027 Nov 27 06:00 memory_monitor_summary.json
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user   1516240 Nov 27 06:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user   1560744 Nov 27 06:00 log.47556149._004029.job.log.tgz.1
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      8585 Nov 27 06:00 heartbeat.json
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       819 Nov 27 06:00 pilotlog.txt
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user   2313761 Nov 27 06:00 log.47556149._004029.job.log.1
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       353 Nov 27 06:00 output.list
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       620 Nov 27 06:00 runtime_log
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user   3891200 Nov 27 06:00 result.tar.gz
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user      9221 Nov 27 06:00 runtime_log.err
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user       650 Nov 27 06:00 5foKDm06rh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8BJKDmQgKDsm.diag
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user     21729 Nov 27 06:00 stderr.txt
[2025-11-27 06:00:51] HITS file was successfully produced:
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user 911870269 Nov 27 05:59 shared/HITS.pool.root.1
[2025-11-27 06:00:51]  *** Contents of shared directory: ***
[2025-11-27 06:00:51] total 1293580
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user 408250587 Nov 27 01:32 ATLAS.root_0
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:32 start_atlas.sh
[2025-11-27 06:00:51] -rw-r--r-- 2 mf493845 unix-user    590105 Nov 27 01:32 input.tar.gz
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user 911870269 Nov 27 05:59 HITS.pool.root.1
[2025-11-27 06:00:51] -rw------- 1 mf493845 unix-user   3891200 Nov 27 06:00 result.tar.gz
06:00:52 (19930): run_atlas exited; CPU time 121521.745910
06:00:52 (19930): called boinc_finish(0)

</stderr_txt>
]]>

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