Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:50:24 (17217): wrapper (7.7.26015): starting
15:50:24 (17217): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:50:24] Arguments: --nthreads 8
[2025-11-26 15:50:24] Threads: 8
[2025-11-26 15:50:24] Checking for CVMFS
[2025-11-26 15:50:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:50:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:50:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:50:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:50:24] 2.11.2.0 28294 118199 141772 153334 3 81 12467436 18432001 1885 130560 0 84304672 99.973 4975519 29942 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 15:50:24] CVMFS is ok
[2025-11-26 15:50:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:50:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:50:24] Further information can be found at the LHC@home message board.
[2025-11-26 15:50:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:50:24] Checking for apptainer binary...
[2025-11-26 15:50:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:50:24] Running /usr/bin/apptainer --version
[2025-11-26 15:50:24] apptainer version 1.3.2-1.el7
[2025-11-26 15:50:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:50:25] c-206-25.aglt2.org
[2025-11-26 15:50:25] apptainer works
[2025-11-26 15:50:25] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:50:25] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:50:25] Starting ATLAS job with PandaID=6891106922
[2025-11-26 15:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:52:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:52:36] 2025-11-27 15:51:47,384 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 10:52:36] 2025-11-27 15:51:47,390 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.0416666666665
[2025-11-27 10:52:36] 2025-11-27 15:51:47,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891106922/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,396 | INFO     | extracted standard info from prmon json
[2025-11-27 10:52:36] 2025-11-27 15:51:47,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:52:36] 2025-11-27 15:51:47,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:52:36] 2025-11-27 15:51:47,426 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:52:36] 2025-11-27 15:51:47,427 | INFO     | sum of square deviations: 437982347772.00867
[2025-11-27 10:52:36] 2025-11-27 15:51:47,470 | INFO     | sum of deviations: 2164709905147.6677
[2025-11-27 10:52:36] 2025-11-27 15:51:47,471 | INFO     | mean x: 1764224452.0730839
[2025-11-27 10:52:36] 2025-11-27 15:51:47,471 | INFO     | mean y: 2864529.101604278
[2025-11-27 10:52:36] 2025-11-27 15:51:47,471 | INFO     | intersect: -8716742929.357695
[2025-11-27 10:52:36] 2025-11-27 15:51:47,472 | INFO     | chi2: 5.622352144213011
[2025-11-27 10:52:36] 2025-11-27 15:51:47,473 | INFO     | sum of square deviations: 432153215982.85767
[2025-11-27 10:52:36] 2025-11-27 15:51:47,500 | INFO     | sum of deviations: 2521746488910.125
[2025-11-27 10:52:36] 2025-11-27 15:51:47,500 | INFO     | mean x: 1764224299.575649
[2025-11-27 10:52:36] 2025-11-27 15:51:47,501 | INFO     | mean y: 2873867.4897045656
[2025-11-27 10:52:36] 2025-11-27 15:51:47,501 | INFO     | intersect: -10291915731.579931
[2025-11-27 10:52:36] 2025-11-27 15:51:47,502 | INFO     | chi2: 2.6532334702559153
[2025-11-27 10:52:36] 2025-11-27 15:51:47,503 | INFO     | current chi2=2.6532334702559153 (change=52.80919084752025 %)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,504 | INFO     | sum of square deviations: 426376038656.1943
[2025-11-27 10:52:36] 2025-11-27 15:51:47,544 | INFO     | sum of deviations: 2628449343606.7827
[2025-11-27 10:52:36] 2025-11-27 15:51:47,544 | INFO     | mean x: 1764224147.0782373
[2025-11-27 10:52:36] 2025-11-27 15:51:47,544 | INFO     | mean y: 2876681.726618705
[2025-11-27 10:52:36] 2025-11-27 15:51:47,545 | INFO     | intersect: -10872907557.880209
[2025-11-27 10:52:36] 2025-11-27 15:51:47,545 | INFO     | chi2: 2.26586201139729
[2025-11-27 10:52:36] 2025-11-27 15:51:47,546 | INFO     | current chi2=2.26586201139729 (change=14.599976338352977 %)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,546 | INFO     | right removable region: 1111
[2025-11-27 10:52:36] 2025-11-27 15:51:47,547 | INFO     | sum of square deviations: 432152823752.8578
[2025-11-27 10:52:36] 2025-11-27 15:51:47,567 | INFO     | time since job start (68471s) is within the limit (172800.0s)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,569 | INFO     | sum of deviations: 1882626492657.3645
[2025-11-27 10:52:36] 2025-11-27 15:51:47,569 | INFO     | mean x: 1764224604.575649
[2025-11-27 10:52:36] 2025-11-27 15:51:47,570 | INFO     | mean y: 2871899.528200537
[2025-11-27 10:52:36] 2025-11-27 15:51:47,570 | INFO     | intersect: -7682779557.585797
[2025-11-27 10:52:36] 2025-11-27 15:51:47,571 | INFO     | chi2: 3.6844639336524216
[2025-11-27 10:52:36] 2025-11-27 15:51:47,571 | INFO     | current chi2=3.6844639336524216 (change=34.467570882325894 %)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,572 | INFO     | sum of square deviations: 426375390104.4966
[2025-11-27 10:52:36] 2025-11-27 15:51:47,594 | INFO     | sum of deviations: 1808495543461.9087
[2025-11-27 10:52:36] 2025-11-27 15:51:47,594 | INFO     | mean x: 1764224757.076439
[2025-11-27 10:52:36] 2025-11-27 15:51:47,594 | INFO     | mean y: 2873855.9775179857
[2025-11-27 10:52:36] 2025-11-27 15:51:47,595 | INFO     | intersect: -7480186106.87811
[2025-11-27 10:52:36] 2025-11-27 15:51:47,595 | INFO     | chi2: 3.634343174568248
[2025-11-27 10:52:36] 2025-11-27 15:51:47,596 | INFO     | current chi2=3.634343174568248 (change=1.3603270377107093 %)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,596 | INFO     | left removable region: 20
[2025-11-27 10:52:36] 2025-11-27 15:51:47,597 | INFO     | sum of square deviations: 402672890023.2425
[2025-11-27 10:52:36] 2025-11-27 15:51:47,618 | INFO     | sum of deviations: 2178341757835.0464
[2025-11-27 10:52:36] 2025-11-27 15:51:47,619 | INFO     | mean x: 1764224726.5829513
[2025-11-27 10:52:36] 2025-11-27 15:51:47,619 | INFO     | mean y: 2889166.712190651
[2025-11-27 10:52:36] 2025-11-27 15:51:47,619 | INFO     | intersect: -9541047083.624739
[2025-11-27 10:52:36] 2025-11-27 15:51:47,620 | INFO     | chi2: 0.22698288122833904
[2025-11-27 10:52:36] 2025-11-27 15:51:47,620 | INFO     | current memory leak: 5.41 B/s (using 1091 data points, chi2=0.23)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | could have reported an average CPU frequency of 2625 MHz (41 samples)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | ..............................
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | . Timing measurements:
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | . get job = 0 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | . initial setup = 2 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | . payload setup = 5 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,621 | INFO     | . stage-in = 0 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,622 | INFO     | . payload execution = 68436 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,622 | INFO     | . stage-out = 3 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,622 | INFO     | . log creation = 0 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,622 | INFO     | ..............................
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | 
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | job summary report
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | --------------------------------------------------
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | PanDA job id: 6891106922
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | task id: 47483661
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | errors: (none)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | pilot state: finished 
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | transexitcode: 0
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | exeerrorcode: 0
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | exeerrordiag: 
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | exitcode: 0
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | exitmsg: OK
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | cpuconsumptiontime: 531870 s
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | nevents: 1000
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | neventsw: 0
[2025-11-27 10:52:36] 2025-11-27 15:51:47,776 | INFO     | pid: 27339
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | pgrp: 27339
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | corecount: 8
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | event service: False
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | sizes: {0: 2284304, 4: 2284566, 11: 2284594, 68444: 2340505, 68449: 2349527, 68451: 2349583, 68456: 2350053}
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | --------------------------------------------------
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | 
[2025-11-27 10:52:36] 2025-11-27 15:51:47,777 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 10:52:36] 2025-11-27 15:51:47,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,800 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:52:36] 2025-11-27 15:51:47,801 | INFO     | job 6891106922 has completed (purged errors)
[2025-11-27 10:52:36] 2025-11-27 15:51:47,802 | INFO     | overall cleanup function is called
[2025-11-27 10:52:36] 2025-11-27 15:51:48,817 | INFO     | --- collectZombieJob: --- 10, [27339]
[2025-11-27 10:52:36] 2025-11-27 15:51:48,817 | INFO     | zombie collector waiting for pid 27339
[2025-11-27 10:52:36] 2025-11-27 15:51:48,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:52:36] 2025-11-27 15:51:48,818 | INFO     | collected zombie processes
[2025-11-27 10:52:36] 2025-11-27 15:51:48,818 | INFO     | will attempt to kill all subprocesses of pid=27339
[2025-11-27 10:52:36] 2025-11-27 15:51:48,981 | INFO     | process IDs to be killed: [27339] (in reverse order)
[2025-11-27 10:52:36] 2025-11-27 15:51:49,040 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:52:36] 2025-11-27 15:51:49,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:52:36] 2025-11-27 15:51:49,043 | INFO     | did not find any defunct processes belonging to 27339
[2025-11-27 10:52:36] 2025-11-27 15:51:49,046 | INFO     | did not find any defunct processes belonging to 27339
[2025-11-27 10:52:36] 2025-11-27 15:51:49,047 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:52:36] 2025-11-27 15:51:49,047 | INFO     | ready for new job
[2025-11-27 10:52:36] 2025-11-27 15:51:49,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:52:36] 2025-11-27 15:51:49,051 | INFO     | ***************************************
[2025-11-27 10:52:36] 2025-11-27 15:51:49,051 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:52:36] 2025-11-27 15:51:49,051 | INFO     | ***************************************
[2025-11-27 10:52:36] 2025-11-27 15:51:49,051 | INFO     | 
[2025-11-27 10:52:36] 2025-11-27 15:51:49,052 | INFO     | architecture information:
[2025-11-27 10:52:36] 2025-11-27 15:51:49,053 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:52:36] 2025-11-27 15:51:49,069 | INFO     | cat /etc/os-release:
[2025-11-27 10:52:36] NAME="CentOS Linux"
[2025-11-27 10:52:36] VERSION="7 (Core)"
[2025-11-27 10:52:36] ID="centos"
[2025-11-27 10:52:36] ID_LIKE="rhel fedora"
[2025-11-27 10:52:36] VERSION_ID="7"
[2025-11-27 10:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:52:36] ANSI_COLOR="0;31"
[2025-11-27 10:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:52:36] HOME_URL="https://www.centos.org/"
[2025-11-27 10:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:52:36] 
[2025-11-27 10:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:52:36] 
[2025-11-27 10:52:36] 2025-11-27 15:51:49,069 | INFO     | ***************************************
[2025-11-27 10:52:36] 2025-11-27 15:51:49,572 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 10:52:36] 2025-11-27 15:51:49,597 | INFO     | sufficient remaining disk space (25791823872 B)
[2025-11-27 10:52:36] 2025-11-27 15:51:49,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:52:36] 2025-11-27 15:51:49,597 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:52:36] 2025-11-27 15:51:49,597 | INFO     | update_server=False
[2025-11-27 10:52:36] 2025-11-27 15:51:49,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:52:36] 2025-11-27 15:51:49,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:52:36] 2025-11-27 15:51:49,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:52:36] 2025-11-27 15:51:49,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:52:36] 2025-11-27 15:51:49,704 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:52:36] 2025-11-27 15:51:49,705 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:52:36] 2025-11-27 15:51:49,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:52:36] 2025-11-27 15:51:49,705 | INFO     | will abort loop
[2025-11-27 10:52:36] 2025-11-27 15:51:50,603 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,603 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,667 | INFO     | all data control threads have been joined
[2025-11-27 10:52:36] 2025-11-27 15:51:50,690 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,694 | INFO     | [job] validate thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,711 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,737 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:50,846 | INFO     | all payload control threads have been joined
[2025-11-27 10:52:36] 2025-11-27 15:51:51,146 | INFO     | all job control threads have been joined
[2025-11-27 10:52:36] 2025-11-27 15:51:51,494 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,608 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,672 | INFO     | [data] control thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,704 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,851 | INFO     | [payload] control thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,987 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:51,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:52,054 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:52,151 | INFO     | [job] control thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:51:53,607 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:52:36] 2025-11-27 15:52:20,843 | INFO     | PID=20908 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 10:52:36] 2025-11-27 15:52:20,843 | INFO     | .. there are 3 such processes running
[2025-11-27 10:52:36] 2025-11-27 15:52:20,844 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:52:36] 2025-11-27 15:52:20,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:52:36] 2025-11-27 15:52:20,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:52:36] 2025-11-27 15:52:29,083 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:52:36] 2025-11-27 15:52:30,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860970800960)>', '<ExcThread(monitor, started 139860232890112)>']
[2025-11-27 10:52:36] 2025-11-27 15:52:30,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:52:36] 2025-11-27 15:52:30,894 | INFO     | [monitor] control thread has ended
[2025-11-27 10:52:36] 2025-11-27 15:52:35,869 | INFO     | all workflow threads have been joined
[2025-11-27 10:52:36] 2025-11-27 15:52:35,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:52:36] 2025-11-27 15:52:35,870 | INFO     | traces error code: 0
[2025-11-27 10:52:36] 2025-11-27 15:52:35,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:52:36] 2025-11-27 15:52:36,004 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:52:36] 2025-11-27 15:52:36,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:52:36] 2025-11-27 15:52:36,009 [wrapper] pilotpid: 20908
[2025-11-27 10:52:36] 2025-11-27 15:52:36,011 [wrapper] Pilot exit status: 0
[2025-11-27 10:52:36] 2025-11-27 15:52:36,019 [wrapper] pandaids: 6891106922
[2025-11-27 10:52:36] 2025-11-27 15:52:36,057 [wrapper] cleanup supervisor_pilot 31766 20909
[2025-11-27 10:52:36] 2025-11-27 15:52:36,060 [wrapper] Test setup, not cleaning
[2025-11-27 10:52:36] 2025-11-27 15:52:36,062 [wrapper] apfmon messages muted
[2025-11-27 10:52:36] 2025-11-27 15:52:36,065 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:52:36] 2025-11-27 15:52:36,067 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:52:36]  *** Error codes and diagnostics ***
[2025-11-27 10:52:36]     "exeErrorCode": 0,
[2025-11-27 10:52:36]     "exeErrorDiag": "",
[2025-11-27 10:52:36]     "pilotErrorCode": 0,
[2025-11-27 10:52:36]     "pilotErrorDiag": "",
[2025-11-27 10:52:36]  *** Listing of results directory ***
[2025-11-27 10:52:36] total 1319800
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 10:52:36] -rwx------ 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas       100 Nov 26 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:52:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 15:50 run_atlas
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas       105 Nov 26 15:50 job.xml
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas 408669905 Nov 26 15:50 EVNT.47483658._000282.pool.root.1
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 15:50 start_atlas.sh
[2025-11-27 10:52:36] drwxrwx--x 2 boincer umatlas      4096 Nov 26 15:50 shared
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 15:50 input.tar.gz
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas         0 Nov 26 15:50 boinc_lockfile
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 15:50 pandaJob.out
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas    991538 Nov 26 15:50 agis_schedconf.cvmfs.json
[2025-11-27 10:52:36] drwx------ 5 boincer umatlas      4096 Nov 26 15:50 pilot3
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas       533 Nov 27 10:39 boinc_task_state.xml
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 10:49 init_data.xml
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas 915337432 Nov 27 10:50 HITS.47483661._002517.pool.root.1
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas      1067 Nov 27 10:51 memory_monitor_summary.json
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas   1516240 Nov 27 10:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas   2294152 Nov 27 10:51 log.47483661._002517.job.log.tgz.1
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas      8672 Nov 27 10:51 heartbeat.json
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas        29 Nov 27 10:52 wrapper_checkpoint.txt
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 10:52 boinc_mmap_file
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas        95 Nov 27 10:52 pilot_heartbeat.json
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas      5007 Nov 27 10:52 pilotlog.txt
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas   9477637 Nov 27 10:52 log.47483661._002517.job.log.1
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas       353 Nov 27 10:52 output.list
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas       620 Nov 27 10:52 runtime_log
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas  11796480 Nov 27 10:52 result.tar.gz
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas      8704 Nov 27 10:52 runtime_log.err
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas       668 Nov 27 10:52 JWyNDmRtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJSKODmVVq2Kn.diag
[2025-11-27 10:52:36] -rw-r--r-- 1 boincer umatlas     21269 Nov 27 10:52 stderr.txt
[2025-11-27 10:52:36] HITS file was successfully produced:
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas 915337432 Nov 27 10:50 shared/HITS.pool.root.1
[2025-11-27 10:52:36]  *** Contents of shared directory: ***
[2025-11-27 10:52:36] total 1305104
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas 408669905 Nov 26 15:50 ATLAS.root_0
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 15:50 start_atlas.sh
[2025-11-27 10:52:36] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 15:50 input.tar.gz
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas 915337432 Nov 27 10:50 HITS.pool.root.1
[2025-11-27 10:52:36] -rw------- 1 boincer umatlas  11796480 Nov 27 10:52 result.tar.gz
10:52:37 (17217): run_atlas exited; CPU time 531069.749294
10:52:37 (17217): called boinc_finish(0)

</stderr_txt>
]]>

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