Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:02:50 (2898577): wrapper (7.7.26015): starting
16:02:50 (2898577): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:02:50] Arguments: --nthreads 8
[2025-11-26 16:02:50] Threads: 8
[2025-11-26 16:02:50] Checking for CVMFS
[2025-11-26 16:02:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:02:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:02:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:02:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:02:53] 2.13.3.0 9438 30542 250424 153334 0 856 39578683 40960001 70076 16776704 0 426002437 99.753 261591949 48275 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:02:53] CVMFS is ok
[2025-11-26 16:02:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:02:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:02:53] Further information can be found at the LHC@home message board.
[2025-11-26 16:02:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:02:53] Checking for apptainer binary...
[2025-11-26 16:02:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:02:53] Running /usr/bin/apptainer --version
[2025-11-26 16:02:53] apptainer version 1.4.4-1.el9
[2025-11-26 16:02:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:02:54] c8-7-3.aglt2.org
[2025-11-26 16:02:54] apptainer works
[2025-11-26 16:02:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:02:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:02:54] Starting ATLAS job with PandaID=6894216899
[2025-11-26 16:02:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:20:08 (2898577): BOINC client no longer exists - exiting
16:20:08 (2898577): timer handler: client dead, exiting
16:22:10 (3303056): wrapper (7.7.26015): starting
16:22:10 (3303056): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 16:22:10] Arguments: --nthreads 9
[2025-11-26 16:22:10] Threads: 9
[2025-11-26 16:22:10] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:22:10] Checking for CVMFS
[2025-11-26 16:22:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:22:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:22:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:22:10] 2.13.3.0 9438 30562 247776 153335 1 670 24342361 40960000 64885 16776704 0 426971137 99.752 263246012 48029 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:22:10] CVMFS is ok
[2025-11-26 16:22:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:22:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:22:10] Further information can be found at the LHC@home message board.
[2025-11-26 16:22:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:22:10] Checking for apptainer binary...
[2025-11-26 16:22:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:22:10] Running /usr/bin/apptainer --version
[2025-11-26 16:22:10] apptainer version 1.4.4-1.el9
[2025-11-26 16:22:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:22:11] c8-7-3.aglt2.org
[2025-11-26 16:22:11] apptainer works
[2025-11-26 16:22:11] Set ATHENA_PROC_NUMBER=9
[2025-11-26 16:22:11] Set ATHENA_CORE_NUMBER=9
[2025-11-26 16:22:11] Starting ATLAS job with PandaID=6894216899
[2025-11-26 16:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:18:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:18:47] 2025-11-27 00:17:35,417 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6894216899/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,417 | INFO     | extracted standard info from prmon json
[2025-11-26 19:18:47] 2025-11-27 00:17:35,417 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:18:47] 2025-11-27 00:17:35,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:18:47] 2025-11-27 00:17:35,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 19:18:47] 2025-11-27 00:17:35,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 19:18:47] 2025-11-27 00:17:35,420 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:18:47] 2025-11-27 00:17:35,420 | INFO     | sum of square deviations: 1550350410.6315835
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | sum of deviations: -54916615480.0
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | mean x: 1764197363.1403508
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | mean y: 2760706.3333333335
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | intersect: 62494277177.7225
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | chi2: 2.122861183899267
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | sum of square deviations: 1418290138.030122
[2025-11-26 19:18:47] 2025-11-27 00:17:35,421 | INFO     | sum of deviations: -40941853798.34336
[2025-11-26 19:18:47] 2025-11-27 00:17:35,422 | INFO     | mean x: 1764197210.6445782
[2025-11-26 19:18:47] 2025-11-27 00:17:35,424 | INFO     | mean y: 2776527.451807229
[2025-11-26 19:18:47] 2025-11-27 00:17:35,424 | INFO     | intersect: 50929947444.663284
[2025-11-26 19:18:47] 2025-11-27 00:17:35,424 | INFO     | chi2: 1.4186694190496585
[2025-11-26 19:18:47] 2025-11-27 00:17:35,424 | INFO     | current chi2=1.4186694190496585 (change=33.17182348947332 %)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,424 | INFO     | sum of square deviations: 1293950940.4223547
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | sum of deviations: -38768726931.68945
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | mean x: 1764197058.1490684
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | mean y: 2779193.403726708
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | intersect: 52860790934.36375
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | chi2: 1.4132412864186372
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | current chi2=1.4132412864186372 (change=0.3826213886147962 %)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | right removable region: 160
[2025-11-26 19:18:47] 2025-11-27 00:17:35,425 | INFO     | sum of square deviations: 1418275498.030122
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | sum of deviations: -74384884531.04819
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | mean x: 1764197515.6445782
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | mean y: 2782800.1686746986
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | intersect: 92530383166.56583
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | chi2: 0.9994171669429597
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | current chi2=0.9994171669429597 (change=52.921219035752856 %)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,426 | INFO     | sum of square deviations: 1293921660.4223547
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | sum of deviations: -71061868085.81367
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | mean x: 1764197668.1490684
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | mean y: 2778661.2422360247
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | intersect: 96892092601.92355
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | chi2: 0.9822447093842619
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | current chi2=0.9822447093842619 (change=1.718247207142268 %)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | left removable region: 20
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | sum of square deviations: 850742385.2214278
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | sum of deviations: -42676213404.8357
[2025-11-26 19:18:47] 2025-11-27 00:17:35,427 | INFO     | mean x: 1764197637.6642857
[2025-11-26 19:18:47] 2025-11-27 00:17:35,428 | INFO     | mean y: 2781867.492857143
[2025-11-26 19:18:47] 2025-11-27 00:17:35,428 | INFO     | intersect: 88501105427.18253
[2025-11-26 19:18:47] 2025-11-27 00:17:35,448 | INFO     | chi2: 0.23756702763772705
[2025-11-26 19:18:47] 2025-11-27 00:17:35,448 | INFO     | current memory leak: -50.16 B/s (using 140 data points, chi2=0.24)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | could have reported an average CPU frequency of 3797 MHz (9 samples)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | ..............................
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . Timing measurements:
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . get job = 0 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . initial setup = 0 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . payload setup = 6 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . stage-in = 0 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . payload execution = 10432 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . stage-out = 5 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | . log creation = 0 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,449 | INFO     | ..............................
[2025-11-26 19:18:47] 2025-11-27 00:17:35,743 | INFO     | time since job start (10514s) is within the limit (172800.0s)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | 
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | job summary report
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | --------------------------------------------------
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | PanDA job id: 6894216899
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | task id: 47523626
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | errors: (none)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | pilot state: finished 
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | transexitcode: 0
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | exeerrorcode: 0
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | exeerrordiag: 
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | exitcode: 0
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | exitmsg: OK
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | cpuconsumptiontime: 52765 s
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | nevents: 400
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | neventsw: 0
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | pid: 3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | pgrp: 3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:35,811 | INFO     | corecount: 9
[2025-11-26 19:18:47] 2025-11-27 00:17:35,812 | INFO     | event service: False
[2025-11-26 19:18:47] 2025-11-27 00:17:35,812 | INFO     | sizes: {0: 2283889, 5: 2284151, 11: 2284207, 10443: 2312949, 10444: 2312948, 10450: 2322004, 10451: 2322188, 10499: 2322446}
[2025-11-26 19:18:47] 2025-11-27 00:17:35,812 | INFO     | --------------------------------------------------
[2025-11-26 19:18:47] 2025-11-27 00:17:35,812 | INFO     | 
[2025-11-26 19:18:47] 2025-11-27 00:17:35,812 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-11-26 19:18:47] 2025-11-27 00:17:35,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:18:47] 2025-11-27 00:17:35,989 | INFO     | job 6894216899 has completed (purged errors)
[2025-11-26 19:18:47] 2025-11-27 00:17:35,990 | INFO     | overall cleanup function is called
[2025-11-26 19:18:47] 2025-11-27 00:17:37,004 | INFO     | --- collectZombieJob: --- 10, [3453123]
[2025-11-26 19:18:47] 2025-11-27 00:17:37,004 | INFO     | zombie collector waiting for pid 3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:37,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:18:47] 2025-11-27 00:17:37,004 | INFO     | collected zombie processes
[2025-11-26 19:18:47] 2025-11-27 00:17:37,004 | INFO     | will attempt to kill all subprocesses of pid=3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:38,487 | INFO     | process IDs to be killed: [3453123] (in reverse order)
[2025-11-26 19:18:47] 2025-11-27 00:17:39,227 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:18:47] 2025-11-27 00:17:39,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:18:47] 2025-11-27 00:17:39,310 | INFO     | did not find any defunct processes belonging to 3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:39,392 | INFO     | did not find any defunct processes belonging to 3453123
[2025-11-26 19:18:47] 2025-11-27 00:17:39,405 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:18:47] 2025-11-27 00:17:39,405 | INFO     | ready for new job
[2025-11-26 19:18:47] 2025-11-27 00:17:39,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:18:47] 2025-11-27 00:17:39,407 | INFO     | ***************************************
[2025-11-26 19:18:47] 2025-11-27 00:17:39,409 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:18:47] 2025-11-27 00:17:39,409 | INFO     | ***************************************
[2025-11-26 19:18:47] 2025-11-27 00:17:39,409 | INFO     | 
[2025-11-26 19:18:47] 2025-11-27 00:17:39,418 | INFO     | architecture information:
[2025-11-26 19:18:47] 2025-11-27 00:17:39,419 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:18:47] 2025-11-27 00:17:39,505 | INFO     | cat /etc/os-release:
[2025-11-26 19:18:47] NAME="CentOS Linux"
[2025-11-26 19:18:47] VERSION="7 (Core)"
[2025-11-26 19:18:47] ID="centos"
[2025-11-26 19:18:47] ID_LIKE="rhel fedora"
[2025-11-26 19:18:47] VERSION_ID="7"
[2025-11-26 19:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:18:47] ANSI_COLOR="0;31"
[2025-11-26 19:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:18:47] HOME_URL="https://www.centos.org/"
[2025-11-26 19:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:18:47] 
[2025-11-26 19:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:18:47] 
[2025-11-26 19:18:47] 2025-11-27 00:17:39,505 | INFO     | ***************************************
[2025-11-26 19:18:47] 2025-11-27 00:17:40,009 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-11-26 19:18:47] 2025-11-27 00:17:40,038 | INFO     | sufficient remaining disk space (158709317632 B)
[2025-11-26 19:18:47] 2025-11-27 00:17:40,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:18:47] 2025-11-27 00:17:40,039 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:18:47] 2025-11-27 00:17:40,039 | INFO     | update_server=False
[2025-11-26 19:18:47] 2025-11-27 00:17:40,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:18:47] 2025-11-27 00:17:40,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:18:47] 2025-11-27 00:17:40,365 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:18:47] 2025-11-27 00:17:40,365 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:18:47] 2025-11-27 00:17:40,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:18:47] 2025-11-27 00:17:40,365 | INFO     | will abort loop
[2025-11-26 19:18:47] 2025-11-27 00:17:40,423 | INFO     | all payload control threads have been joined
[2025-11-26 19:18:47] 2025-11-27 00:17:40,583 | INFO     | all data control threads have been joined
[2025-11-26 19:18:47] 2025-11-27 00:17:40,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:18:47] 2025-11-27 00:17:41,062 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:18:47] 2025-11-27 00:17:41,077 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,371 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,429 | INFO     | [payload] control thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,601 | INFO     | [data] control thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,608 | INFO     | all job control threads have been joined
[2025-11-26 19:18:47] 2025-11-27 00:17:41,651 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:41,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,002 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,008 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,108 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,288 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,318 | INFO     | [job] validate thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,362 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:42,614 | INFO     | [job] control thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:43,069 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:17:44,071 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:18:47] 2025-11-27 00:18:12,075 | INFO     | PID=3358811 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:18:47] 2025-11-27 00:18:12,075 | INFO     | .. there are 122 such processes running
[2025-11-26 19:18:47] 2025-11-27 00:18:12,076 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:18:47] 2025-11-27 00:18:12,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:18:47] 2025-11-27 00:18:12,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:18:47] 2025-11-27 00:18:39,645 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:18:47] 2025-11-27 00:18:40,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644018952000)>', '<ExcThread(monitor, started 139643404150528)>']
[2025-11-26 19:18:47] 2025-11-27 00:18:41,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:18:47] 2025-11-27 00:18:41,318 | INFO     | [monitor] control thread has ended
[2025-11-26 19:18:47] 2025-11-27 00:18:45,685 | INFO     | all workflow threads have been joined
[2025-11-26 19:18:47] 2025-11-27 00:18:45,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:18:47] 2025-11-27 00:18:45,685 | INFO     | traces error code: 0
[2025-11-26 19:18:47] 2025-11-27 00:18:45,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:18:47] 2025-11-27 00:18:46,078 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:18:47] 2025-11-27 00:18:46,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:18:47] 2025-11-27 00:18:46,205 [wrapper] pilotpid: 3358811
[2025-11-26 19:18:47] 2025-11-27 00:18:46,247 [wrapper] Pilot exit status: 0
[2025-11-26 19:18:47] 2025-11-27 00:18:46,496 [wrapper] pandaids: 6894216899 6894216899
[2025-11-26 19:18:47] 2025-11-27 00:18:46,957 [wrapper] cleanup supervisor_pilot 1976381 3358813
[2025-11-26 19:18:47] 2025-11-27 00:18:47,000 [wrapper] Test setup, not cleaning
[2025-11-26 19:18:47] 2025-11-27 00:18:47,049 [wrapper] apfmon messages muted
[2025-11-26 19:18:47] 2025-11-27 00:18:47,100 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:18:47] 2025-11-27 00:18:47,121 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:18:47]  *** Error codes and diagnostics ***
[2025-11-26 19:18:47]     "exeErrorCode": 0,
[2025-11-26 19:18:47]     "exeErrorDiag": "",
[2025-11-26 19:18:47]     "pilotErrorCode": 0,
[2025-11-26 19:18:47]     "pilotErrorDiag": "",
[2025-11-26 19:18:47]  *** Listing of results directory ***
[2025-11-26 19:18:47] total 923708
[2025-11-26 19:18:47] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 18:11 pilot3.tar.gz
[2025-11-26 19:18:47] -rwx------. 1 boincer umatlas     36292 Nov 23 18:56 runpilot2-wrapper.sh
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 18:56 queuedata.json
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:18:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:02 run_atlas
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:02 job.xml
[2025-11-26 19:18:47] -rw-r--r--. 3 boincer umatlas 307057584 Nov 26 16:02 EVNT.47523624._000002.pool.root.1
[2025-11-26 19:18:47] -rw-r--r--. 3 boincer umatlas 307057584 Nov 26 16:02 ATLAS.root_0
[2025-11-26 19:18:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:02 start_atlas.sh
[2025-11-26 19:18:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:02 shared
[2025-11-26 19:18:47] -rw-r--r--. 2 boincer umatlas    589938 Nov 26 16:02 input.tar.gz
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:02 boinc_lockfile
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas      2604 Nov 26 16:22 pandaJob.out
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas        57 Nov 26 16:22 setup.sh.local
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas    991538 Nov 26 16:22 agis_schedconf.cvmfs.json
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas      7172 Nov 26 19:11 init_data.xml
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas 324657975 Nov 26 19:15 HITS.47523626._000004.pool.root.1
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas       532 Nov 26 19:15 boinc_task_state.xml
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas      1043 Nov 26 19:16 memory_monitor_summary.json
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas    391749 Nov 26 19:16 log.47523626._000004.job.log.tgz.1
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas      7772 Nov 26 19:17 heartbeat.json
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas        96 Nov 26 19:18 pilot_heartbeat.json
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:18 boinc_mmap_file
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas        27 Nov 26 19:18 wrapper_checkpoint.txt
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas      5013 Nov 26 19:18 pilotlog.txt
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas   1192580 Nov 26 19:18 log.47523626._000004.job.log.1
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas       357 Nov 26 19:18 output.list
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:18 runtime_log
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas   1607680 Nov 26 19:18 result.tar.gz
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas      9436 Nov 26 19:18 runtime_log.err
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas       780 Nov 26 19:18 GVXMDm37Yh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZILKDmaGVhnn.diag
[2025-11-26 19:18:47] -rw-r--r--. 1 boincer umatlas     23567 Nov 26 19:18 stderr.txt
[2025-11-26 19:18:47] HITS file was successfully produced:
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas 324657975 Nov 26 19:15 shared/HITS.pool.root.1
[2025-11-26 19:18:47]  *** Contents of shared directory: ***
[2025-11-26 19:18:47] total 619092
[2025-11-26 19:18:47] -rw-r--r--. 3 boincer umatlas 307057584 Nov 26 16:02 ATLAS.root_0
[2025-11-26 19:18:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:02 start_atlas.sh
[2025-11-26 19:18:47] -rw-r--r--. 2 boincer umatlas    589938 Nov 26 16:02 input.tar.gz
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas 324657975 Nov 26 19:15 HITS.pool.root.1
[2025-11-26 19:18:47] -rw-------. 1 boincer umatlas   1607680 Nov 26 19:18 result.tar.gz
19:18:50 (3303056): run_atlas exited; CPU time 53246.863734
19:18:50 (3303056): called boinc_finish(0)

</stderr_txt>
]]>

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