Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:26:53 (15038): wrapper (7.7.26015): starting
01:26:53 (15038): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:26:53] Arguments: --nthreads 8
[2025-11-27 01:26:53] Threads: 8
[2025-11-27 01:26:53] Checking for CVMFS
[2025-11-27 01:26:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:26:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:26:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:26:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:26:53] 2.11.0.0 4390 66054 98248 153341 1 88 3710322 4096001 1497 130560 1 3027004 99.463 3697583 445 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:26:53] CVMFS is ok
[2025-11-27 01:26:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:26:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:26:53] Further information can be found at the LHC@home message board.
[2025-11-27 01:26:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:26:53] Checking for apptainer binary...
[2025-11-27 01:26:53] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:26:53] apptainer is not installed, using version from CVMFS
[2025-11-27 01:26:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:26:53] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927975/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node174
[2025-11-27 01:26:53] apptainer works
[2025-11-27 01:26:53] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:26:53] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:26:53] Starting ATLAS job with PandaID=6896765529
[2025-11-27 01:26:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927975/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:51:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:51:45] 2025-11-27 04:51:11,870 | INFO     | executing command: lscpu
[2025-11-27 05:51:45] 2025-11-27 04:51:11,901 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 05:51:45] 2025-11-27 04:51:12,419 | INFO     | time since job start (15854s) is within the limit (172800.0s)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,674 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:51:45] 2025-11-27 04:51:13,678 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2907.373609375
[2025-11-27 05:51:45] 2025-11-27 04:51:13,684 | INFO     | using path: /tmp/job_10927975/atlas/pilot/slots/0/PanDA_Pilot-6896765529/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,684 | INFO     | extracted standard info from prmon json
[2025-11-27 05:51:45] 2025-11-27 04:51:13,684 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:51:45] 2025-11-27 04:51:13,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:51:45] 2025-11-27 04:51:13,687 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:51:45] 2025-11-27 04:51:13,687 | INFO     | sum of square deviations: 5449944045.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | sum of deviations: 128715767092.50008
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | mean x: 1764211135.5
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | mean y: 2900692.403846154
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | intersect: -41663910515.93272
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | chi2: 2.8106584885319075
[2025-11-27 05:51:45] 2025-11-27 04:51:13,688 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | sum of deviations: 171693633956.99997
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | mean x: 1764210983.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | mean y: 2921752.294117647
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | intersect: -58910253121.29856
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | chi2: 1.4591253133406126
[2025-11-27 05:51:45] 2025-11-27 04:51:13,689 | INFO     | current chi2=1.4591253133406126 (change=48.08599766587942 %)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,690 | INFO     | sum of square deviations: 4844974562.5
[2025-11-27 05:51:45] 2025-11-27 04:51:13,690 | INFO     | sum of deviations: 165720139874.49997
[2025-11-27 05:51:45] 2025-11-27 04:51:13,690 | INFO     | mean x: 1764210830.5
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | mean y: 2918680.66
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | intersect: -60341106210.91914
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | chi2: 1.4560963280351493
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | current chi2=1.4560963280351493 (change=0.2075891136812987 %)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | right removable region: 249
[2025-11-27 05:51:45] 2025-11-27 04:51:13,691 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | sum of deviations: 79494536503.00008
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | mean x: 1764211288.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | mean y: 2924844.9098039214
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | intersect: -27274011592.480362
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | chi2: 1.4235754565001362
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | current chi2=1.4235754565001362 (change=49.35082073084898 %)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,692 | INFO     | sum of square deviations: 4844974562.5
[2025-11-27 05:51:45] 2025-11-27 04:51:13,693 | INFO     | sum of deviations: 66500159031.50001
[2025-11-27 05:51:45] 2025-11-27 04:51:13,693 | INFO     | mean x: 1764211440.5
[2025-11-27 05:51:45] 2025-11-27 04:51:13,693 | INFO     | mean y: 2931521.068
[2025-11-27 05:51:45] 2025-11-27 04:51:13,693 | INFO     | intersect: -24211920351.736176
[2025-11-27 05:51:45] 2025-11-27 04:51:13,694 | INFO     | chi2: 1.3995715494883687
[2025-11-27 05:51:45] 2025-11-27 04:51:13,694 | INFO     | current chi2=1.3995715494883687 (change=1.6861703327466133 %)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,694 | INFO     | left removable region: 20
[2025-11-27 05:51:45] 2025-11-27 04:51:13,694 | INFO     | sum of square deviations: 3723716330.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | sum of deviations: 84041545189.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | mean x: 1764211410.0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | mean y: 2962743.917030568
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | intersect: -39813994241.22056
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | chi2: 0.02063045158021044
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | current memory leak: 22.57 B/s (using 229 data points, chi2=0.02)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | could have reported an average CPU frequency of 3023 MHz (12 samples)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | ..............................
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . Timing measurements:
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . get job = 0 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . initial setup = 1 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . payload setup = 2 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . stage-in = 0 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . payload execution = 15830 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . stage-out = 1 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | . log creation = 0 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,695 | INFO     | ..............................
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | 
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | job summary report
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | --------------------------------------------------
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | PanDA job id: 6896765529
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | task id: 47556185
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | errors: (none)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:51:45] 2025-11-27 04:51:13,743 | INFO     | pilot state: finished 
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | transexitcode: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | exeerrorcode: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | exeerrordiag: 
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | exitcode: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | exitmsg: OK
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | cpuconsumptiontime: 119681 s
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | nevents: 1000
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | neventsw: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | pid: 10583
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | pgrp: 10583
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | corecount: 8
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | event service: False
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | sizes: {0: 2284438, 2: 2284700, 11: 2284728, 15836: 2317033, 15837: 2317032, 15838: 2326112, 15840: 2326296, 15842: 2326542}
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | --------------------------------------------------
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | 
[2025-11-27 05:51:45] 2025-11-27 04:51:13,744 | INFO     | executing command: ls -lF /tmp/job_10927975/atlas/pilot/slots/0
[2025-11-27 05:51:45] 2025-11-27 04:51:13,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | job 6896765529 has completed (purged errors)
[2025-11-27 05:51:45] 2025-11-27 04:51:13,754 | INFO     | overall cleanup function is called
[2025-11-27 05:51:45] 2025-11-27 04:51:14,762 | INFO     | --- collectZombieJob: --- 10, [10583]
[2025-11-27 05:51:45] 2025-11-27 04:51:14,762 | INFO     | zombie collector waiting for pid 10583
[2025-11-27 05:51:45] 2025-11-27 04:51:14,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:51:45] 2025-11-27 04:51:14,762 | INFO     | collected zombie processes
[2025-11-27 05:51:45] 2025-11-27 04:51:14,762 | INFO     | will attempt to kill all subprocesses of pid=10583
[2025-11-27 05:51:45] 2025-11-27 04:51:14,888 | INFO     | process IDs to be killed: [10583] (in reverse order)
[2025-11-27 05:51:45] 2025-11-27 04:51:14,936 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:51:45] 2025-11-27 04:51:14,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:51:45] 2025-11-27 04:51:14,941 | INFO     | did not find any defunct processes belonging to 10583
[2025-11-27 05:51:45] 2025-11-27 04:51:14,945 | INFO     | did not find any defunct processes belonging to 10583
[2025-11-27 05:51:45] 2025-11-27 04:51:14,945 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:51:45] 2025-11-27 04:51:14,945 | INFO     | ready for new job
[2025-11-27 05:51:45] 2025-11-27 04:51:14,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:51:45] 2025-11-27 04:51:14,946 | INFO     | ***************************************
[2025-11-27 05:51:45] 2025-11-27 04:51:14,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:51:45] 2025-11-27 04:51:14,946 | INFO     | ***************************************
[2025-11-27 05:51:45] 2025-11-27 04:51:14,946 | INFO     | 
[2025-11-27 05:51:45] 2025-11-27 04:51:14,960 | INFO     | architecture information:
[2025-11-27 05:51:45] 2025-11-27 04:51:14,961 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:51:45] 2025-11-27 04:51:14,967 | INFO     | cat /etc/os-release:
[2025-11-27 05:51:45] NAME="CentOS Linux"
[2025-11-27 05:51:45] VERSION="7 (Core)"
[2025-11-27 05:51:45] ID="centos"
[2025-11-27 05:51:45] ID_LIKE="rhel fedora"
[2025-11-27 05:51:45] VERSION_ID="7"
[2025-11-27 05:51:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:51:45] ANSI_COLOR="0;31"
[2025-11-27 05:51:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:51:45] HOME_URL="https://www.centos.org/"
[2025-11-27 05:51:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:51:45] 
[2025-11-27 05:51:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:51:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:51:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:51:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:51:45] 
[2025-11-27 05:51:45] 2025-11-27 04:51:14,967 | INFO     | ***************************************
[2025-11-27 05:51:45] 2025-11-27 04:51:15,470 | INFO     | executing command: df -mP /tmp/job_10927975/atlas/pilot/slots/0
[2025-11-27 05:51:45] 2025-11-27 04:51:15,475 | INFO     | sufficient remaining disk space (213843443712 B)
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | INFO     | update_server=False
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:51:45] 2025-11-27 04:51:15,476 | INFO     | aborting loop
[2025-11-27 05:51:45] 2025-11-27 04:51:16,181 | INFO     | all data control threads have been joined
[2025-11-27 05:51:45] 2025-11-27 04:51:16,205 | INFO     | all job control threads have been joined
[2025-11-27 05:51:45] 2025-11-27 04:51:16,475 | INFO     | all payload control threads have been joined
[2025-11-27 05:51:45] 2025-11-27 04:51:16,481 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:16,481 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:16,482 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:16,523 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:16,776 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:16,981 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,186 | INFO     | [data] control thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,208 | INFO     | [job] control thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:51:45] 2025-11-27 04:51:17,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,394 | INFO     | [job] validate thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,480 | INFO     | [payload] control thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,481 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,500 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,534 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:17,796 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:21,273 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:51:45] 2025-11-27 04:51:24,311 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:51:45] 2025-11-27 04:51:26,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054515456)>']
[2025-11-27 05:51:45] 2025-11-27 04:51:31,242 | INFO     | all workflow threads have been joined
[2025-11-27 05:51:45] 2025-11-27 04:51:31,242 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:51:45] 2025-11-27 04:51:31,242 | INFO     | traces error code: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:31,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:51:45] 2025-11-27 04:51:45,634 | INFO     | PID=18864 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | INFO     | .. there are 8 such processes running
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:51:45] 2025-11-27 04:51:45,635 | INFO     | [monitor] control thread has ended
[2025-11-27 05:51:45] 2025-11-27 04:51:45,692 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:51:45] 2025-11-27 04:51:45,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:51:45] 2025-11-27 04:51:45,695 [wrapper] pilotpid: 18864
[2025-11-27 05:51:45] 2025-11-27 04:51:45,696 [wrapper] Pilot exit status: 0
[2025-11-27 05:51:45] 2025-11-27 04:51:45,699 [wrapper] pandaids: 6896765529
[2025-11-27 05:51:45] 2025-11-27 04:51:45,726 [wrapper] cleanup supervisor_pilot 26252 18865
[2025-11-27 05:51:45] 2025-11-27 04:51:45,727 [wrapper] Test setup, not cleaning
[2025-11-27 05:51:45] 2025-11-27 04:51:45,729 [wrapper] apfmon messages muted
[2025-11-27 05:51:45] 2025-11-27 04:51:45,730 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:51:45] 2025-11-27 04:51:45,731 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:51:45]  *** Error codes and diagnostics ***
[2025-11-27 05:51:45]     "exeErrorCode": 0,
[2025-11-27 05:51:45]     "exeErrorDiag": "",
[2025-11-27 05:51:45]     "pilotErrorCode": 0,
[2025-11-27 05:51:45]     "pilotErrorDiag": "",
[2025-11-27 05:51:45]  *** Listing of results directory ***
[2025-11-27 05:51:45] total 1299272
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user    576529 Nov 25 10:27 pilot3.tar.gz
[2025-11-27 05:51:45] -rwx------ 1 mf493845 unix-user     36292 Nov 25 10:30 runpilot2-wrapper.sh
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      5112 Nov 25 10:31 queuedata.json
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       100 Nov 26 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:51:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:42 run_atlas
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       105 Nov 26 23:42 job.xml
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:26 start_atlas.sh
[2025-11-27 05:51:45] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:26 shared
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user    590101 Nov 27 01:26 input.tar.gz
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      6392 Nov 27 01:26 init_data.xml
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user 408978425 Nov 27 01:26 EVNT.47483658._004268.pool.root.1
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user         0 Nov 27 01:26 boinc_setup_complete
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:26 boinc_mmap_file
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user         0 Nov 27 01:26 boinc_lockfile
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      2784 Nov 27 01:26 pandaJob.out
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user    991546 Nov 27 01:26 agis_schedconf.cvmfs.json
[2025-11-27 05:51:45] drwx------ 5 mf493845 unix-user       440 Nov 27 01:26 pilot3
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user 909880768 Nov 27 05:50 HITS.47556185._000315.pool.root.1
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user        95 Nov 27 05:51 pilot_heartbeat.json
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      1025 Nov 27 05:51 memory_monitor_summary.json
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user   1557007 Nov 27 05:51 log.47556185._000315.job.log.tgz.1
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      8598 Nov 27 05:51 heartbeat.json
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       820 Nov 27 05:51 pilotlog.txt
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user   2298759 Nov 27 05:51 log.47556185._000315.job.log.1
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       353 Nov 27 05:51 output.list
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       620 Nov 27 05:51 runtime_log
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:51 result.tar.gz
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:51 runtime_log.err
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user       650 Nov 27 05:51 FgiLDm8Y4h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMIMKDmRopwam.diag
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user     21765 Nov 27 05:51 stderr.txt
[2025-11-27 05:51:45] HITS file was successfully produced:
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user 909880768 Nov 27 05:50 shared/HITS.pool.root.1
[2025-11-27 05:51:45]  *** Contents of shared directory: ***
[2025-11-27 05:51:45] total 1292328
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:26 start_atlas.sh
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user    590101 Nov 27 01:26 input.tar.gz
[2025-11-27 05:51:45] -rw-r--r-- 2 mf493845 unix-user 408978425 Nov 27 01:26 ATLAS.root_0
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user 909880768 Nov 27 05:50 HITS.pool.root.1
[2025-11-27 05:51:45] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:51 result.tar.gz
05:51:46 (15038): run_atlas exited; CPU time 119905.305672
05:51:46 (15038): called boinc_finish(0)

</stderr_txt>
]]>

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