Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:45:24 (1106168): wrapper (7.7.26015): starting
16:45:24 (1106168): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:24] Arguments: --nthreads 8
[2025-11-26 16:45:24] Threads: 8
[2025-11-26 16:45:24] Checking for CVMFS
[2025-11-26 16:45:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:27] 2.13.3.0 12257 30558 405612 153335 3 637 21097228 32935937 53086 16776704 0 292649584 99.784 156812562 29484 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:27] CVMFS is ok
[2025-11-26 16:45:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:27] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:27] Checking for apptainer binary...
[2025-11-26 16:45:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:27] Running /usr/bin/apptainer --version
[2025-11-26 16:45:27] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:28] c-1-3.aglt2.org
[2025-11-26 16:45:28] apptainer works
[2025-11-26 16:45:28] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:28] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:28] Starting ATLAS job with PandaID=6894239165
[2025-11-26 16:45:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:20:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:20:47] 2025-11-27 08:20:02,038 | INFO     | extracted standard info from prmon json
[2025-11-27 03:20:47] 2025-11-27 08:20:02,048 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:20:47] 2025-11-27 08:20:02,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:20:47] 2025-11-27 08:20:02,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 03:20:47] 2025-11-27 08:20:02,052 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 03:20:47] 2025-11-27 08:20:02,101 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:20:47] 2025-11-27 08:20:02,102 | INFO     | sum of square deviations: 74260783491.48154
[2025-11-27 03:20:47] 2025-11-27 08:20:02,143 | INFO     | sum of deviations: -5096146290.222183
[2025-11-27 03:20:47] 2025-11-27 08:20:02,162 | INFO     | mean x: 1764212616.2962964
[2025-11-27 03:20:47] 2025-11-27 08:20:02,162 | INFO     | mean y: 2594273.7729468597
[2025-11-27 03:20:47] 2025-11-27 08:20:02,162 | INFO     | intersect: 123663365.11552428
[2025-11-27 03:20:47] 2025-11-27 08:20:02,163 | INFO     | chi2: 4.582334749441456
[2025-11-27 03:20:47] 2025-11-27 08:20:02,164 | INFO     | sum of square deviations: 72481456434.22739
[2025-11-27 03:20:47] 2025-11-27 08:20:02,207 | INFO     | sum of deviations: 116551040894.11371
[2025-11-27 03:20:47] 2025-11-27 08:20:02,226 | INFO     | mean x: 1764212463.7954545
[2025-11-27 03:20:47] 2025-11-27 08:20:02,226 | INFO     | mean y: 2604666.326298701
[2025-11-27 03:20:47] 2025-11-27 08:20:02,226 | INFO     | intersect: -2834269882.411802
[2025-11-27 03:20:47] 2025-11-27 08:20:02,227 | INFO     | chi2: 2.5267954552908005
[2025-11-27 03:20:47] 2025-11-27 08:20:02,227 | INFO     | current chi2=2.5267954552908005 (change=44.85790337341039 %)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,228 | INFO     | sum of square deviations: 70730818409.38141
[2025-11-27 03:20:47] 2025-11-27 08:20:02,305 | INFO     | sum of deviations: 115629995902.41087
[2025-11-27 03:20:47] 2025-11-27 08:20:02,305 | INFO     | mean x: 1764212311.2962356
[2025-11-27 03:20:47] 2025-11-27 08:20:02,305 | INFO     | mean y: 2604586.091653028
[2025-11-27 03:20:47] 2025-11-27 08:20:02,305 | INFO     | intersect: -2881511092.3876095
[2025-11-27 03:20:47] 2025-11-27 08:20:02,306 | INFO     | chi2: 2.527118101037681
[2025-11-27 03:20:47] 2025-11-27 08:20:02,306 | INFO     | current chi2=2.527118101037681 (change=-0.012768969732195257 %)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,307 | INFO     | right removable region: 610
[2025-11-27 03:20:47] 2025-11-27 08:20:02,307 | INFO     | sum of square deviations: 72481419591.03868
[2025-11-27 03:20:47] 2025-11-27 08:20:02,376 | INFO     | sum of deviations: -151941706672.00006
[2025-11-27 03:20:47] 2025-11-27 08:20:02,376 | INFO     | mean x: 1764212768.7987013
[2025-11-27 03:20:47] 2025-11-27 08:20:02,376 | INFO     | mean y: 2606832.0
[2025-11-27 03:20:47] 2025-11-27 08:20:02,377 | INFO     | intersect: 3700899450.1118965
[2025-11-27 03:20:47] 2025-11-27 08:20:02,377 | INFO     | chi2: 2.3534829175421486
[2025-11-27 03:20:47] 2025-11-27 08:20:02,378 | INFO     | current chi2=2.3534829175421486 (change=48.64009186956461 %)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,378 | INFO     | sum of square deviations: 70730707390.58894
[2025-11-27 03:20:47] 2025-11-27 08:20:02,467 | INFO     | sum of deviations: -160760372363.84955
[2025-11-27 03:20:47] 2025-11-27 08:20:02,468 | INFO     | mean x: 1764212921.3011456
[2025-11-27 03:20:47] 2025-11-27 08:20:02,468 | INFO     | mean y: 2607596.499181669
[2025-11-27 03:20:47] 2025-11-27 08:20:02,468 | INFO     | intersect: 4012401031.6376987
[2025-11-27 03:20:47] 2025-11-27 08:20:02,469 | INFO     | chi2: 2.334554826689858
[2025-11-27 03:20:47] 2025-11-27 08:20:02,469 | INFO     | current chi2=2.334554826689858 (change=0.804258688737707 %)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,469 | INFO     | left removable region: 20
[2025-11-27 03:20:47] 2025-11-27 08:20:02,470 | INFO     | sum of square deviations: 63685409081.193214
[2025-11-27 03:20:47] 2025-11-27 08:20:02,520 | INFO     | sum of deviations: -8594645890.569483
[2025-11-27 03:20:47] 2025-11-27 08:20:02,520 | INFO     | mean x: 1764212890.8033898
[2025-11-27 03:20:47] 2025-11-27 08:20:02,521 | INFO     | mean y: 2615433.6847457625
[2025-11-27 03:20:47] 2025-11-27 08:20:02,521 | INFO     | intersect: 240704272.0982961
[2025-11-27 03:20:47] 2025-11-27 08:20:02,522 | INFO     | chi2: 0.18133027343891622
[2025-11-27 03:20:47] 2025-11-27 08:20:02,522 | INFO     | current memory leak: -0.13 B/s (using 590 data points, chi2=0.18)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | could have reported an average CPU frequency of 2773 MHz (24 samples)
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | ..............................
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | . Timing measurements:
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | . get job = 0 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | . initial setup = 3 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,523 | INFO     | . payload setup = 36 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,524 | INFO     | . stage-in = 0 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,539 | INFO     | . payload execution = 37863 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,539 | INFO     | . stage-out = 10 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,539 | INFO     | . log creation = 0 s
[2025-11-27 03:20:47] 2025-11-27 08:20:02,540 | INFO     | ..............................
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | 
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | job summary report
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | --------------------------------------------------
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | PanDA job id: 6894239165
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | task id: 47523939
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | errors: (none)
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | pilot state: finished 
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | transexitcode: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | exeerrorcode: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:03,212 | INFO     | exeerrordiag: 
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | exitcode: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | exitmsg: OK
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | cpuconsumptiontime: 124556 s
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | nevents: 400
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | neventsw: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | pid: 1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | pgrp: 1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | corecount: 8
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | event service: False
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | sizes: {0: 2283725, 1: 2283753, 2: 2283952, 13: 2283952, 24: 2284008, 28: 2284298, 35: 2284454, 37906: 2325148, 37907: 2325147, 37919: 2334201, 37920: 2334257, 379
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | --------------------------------------------------
[2025-11-27 03:20:47] 2025-11-27 08:20:03,213 | INFO     | 
[2025-11-27 03:20:47] 2025-11-27 08:20:03,214 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 03:20:47] 2025-11-27 08:20:03,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,496 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,500 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:20:47] 2025-11-27 08:20:03,501 | INFO     | job 6894239165 has completed (purged errors)
[2025-11-27 03:20:47] 2025-11-27 08:20:03,502 | INFO     | overall cleanup function is called
[2025-11-27 03:20:47] 2025-11-27 08:20:04,524 | INFO     | --- collectZombieJob: --- 10, [1143447]
[2025-11-27 03:20:47] 2025-11-27 08:20:04,524 | INFO     | zombie collector waiting for pid 1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:04,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:20:47] 2025-11-27 08:20:04,524 | INFO     | collected zombie processes
[2025-11-27 03:20:47] 2025-11-27 08:20:04,524 | INFO     | will attempt to kill all subprocesses of pid=1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:08,796 | INFO     | PID=1117178 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:20:47] 2025-11-27 08:20:08,798 | INFO     | .. there are 78 such processes running
[2025-11-27 03:20:47] 2025-11-27 08:20:09,303 | INFO     | process IDs to be killed: [1143447] (in reverse order)
[2025-11-27 03:20:47] 2025-11-27 08:20:10,260 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:20:47] 2025-11-27 08:20:10,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:20:47] 2025-11-27 08:20:10,305 | INFO     | did not find any defunct processes belonging to 1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:10,362 | INFO     | did not find any defunct processes belonging to 1143447
[2025-11-27 03:20:47] 2025-11-27 08:20:10,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:20:47] 2025-11-27 08:20:10,384 | INFO     | ready for new job
[2025-11-27 03:20:47] 2025-11-27 08:20:10,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:20:47] 2025-11-27 08:20:10,389 | INFO     | ***************************************
[2025-11-27 03:20:47] 2025-11-27 08:20:10,389 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:20:47] 2025-11-27 08:20:10,389 | INFO     | ***************************************
[2025-11-27 03:20:47] 2025-11-27 08:20:10,389 | INFO     | 
[2025-11-27 03:20:47] 2025-11-27 08:20:10,400 | INFO     | architecture information:
[2025-11-27 03:20:47] 2025-11-27 08:20:10,404 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:20:47] 2025-11-27 08:20:10,599 | INFO     | cat /etc/os-release:
[2025-11-27 03:20:47] NAME="CentOS Linux"
[2025-11-27 03:20:47] VERSION="7 (Core)"
[2025-11-27 03:20:47] ID="centos"
[2025-11-27 03:20:47] ID_LIKE="rhel fedora"
[2025-11-27 03:20:47] VERSION_ID="7"
[2025-11-27 03:20:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:20:47] ANSI_COLOR="0;31"
[2025-11-27 03:20:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:20:47] HOME_URL="https://www.centos.org/"
[2025-11-27 03:20:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:20:47] 
[2025-11-27 03:20:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:20:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:20:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:20:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:20:47] 
[2025-11-27 03:20:47] 2025-11-27 08:20:10,599 | INFO     | ***************************************
[2025-11-27 03:20:47] 2025-11-27 08:20:11,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 03:20:47] 2025-11-27 08:20:11,150 | INFO     | sufficient remaining disk space (66009956352 B)
[2025-11-27 03:20:47] 2025-11-27 08:20:11,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:20:47] 2025-11-27 08:20:11,151 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:20:47] 2025-11-27 08:20:11,151 | INFO     | update_server=False
[2025-11-27 03:20:47] 2025-11-27 08:20:11,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:20:47] 2025-11-27 08:20:11,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:20:47] 2025-11-27 08:20:11,368 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:20:47] 2025-11-27 08:20:11,368 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:20:47] 2025-11-27 08:20:11,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:20:47] 2025-11-27 08:20:11,368 | INFO     | will abort loop
[2025-11-27 03:20:47] 2025-11-27 08:20:11,551 | INFO     | all payload control threads have been joined
[2025-11-27 03:20:47] 2025-11-27 08:20:11,930 | INFO     | all data control threads have been joined
[2025-11-27 03:20:47] 2025-11-27 08:20:12,047 | INFO     | all job control threads have been joined
[2025-11-27 03:20:47] 2025-11-27 08:20:12,157 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,164 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,164 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,165 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,321 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:20:47] 2025-11-27 08:20:12,374 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,558 | INFO     | [payload] control thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,637 | INFO     | [job] validate thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,643 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,802 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:12,936 | INFO     | [data] control thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:13,053 | INFO     | [job] control thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:13,076 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:13,158 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:13,328 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:13,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:20:47] 2025-11-27 08:20:17,923 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:20:47] 2025-11-27 08:20:32,032 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:20:47] 2025-11-27 08:20:33,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188035172160)>', '<ExcThread(monitor, started 140187690575616)>']
[2025-11-27 03:20:47] 2025-11-27 08:20:38,141 | INFO     | all workflow threads have been joined
[2025-11-27 03:20:47] 2025-11-27 08:20:38,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:20:47] 2025-11-27 08:20:38,141 | INFO     | traces error code: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:38,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:20:47] 2025-11-27 08:20:43,357 | INFO     | PID=1117178 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:20:47] 2025-11-27 08:20:43,358 | INFO     | .. there are 78 such processes running
[2025-11-27 03:20:47] 2025-11-27 08:20:43,366 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:20:47] 2025-11-27 08:20:43,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:20:47] 2025-11-27 08:20:43,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:20:47] 2025-11-27 08:20:43,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:20:47] 2025-11-27 08:20:43,367 | INFO     | [monitor] control thread has ended
[2025-11-27 03:20:47] 2025-11-27 08:20:43,866 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:20:47] 2025-11-27 08:20:43,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:20:47] 2025-11-27 08:20:43,914 [wrapper] pilotpid: 1117178
[2025-11-27 03:20:47] 2025-11-27 08:20:43,962 [wrapper] Pilot exit status: 0
[2025-11-27 03:20:47] 2025-11-27 08:20:44,258 [wrapper] pandaids: 6894239165
[2025-11-27 03:20:47] 2025-11-27 08:20:45,997 [wrapper] cleanup supervisor_pilot  777407 1117179
[2025-11-27 03:20:47] 2025-11-27 08:20:46,069 [wrapper] Test setup, not cleaning
[2025-11-27 03:20:47] 2025-11-27 08:20:46,112 [wrapper] apfmon messages muted
[2025-11-27 03:20:47] 2025-11-27 08:20:46,150 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:20:47] 2025-11-27 08:20:46,169 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:20:47]  *** Error codes and diagnostics ***
[2025-11-27 03:20:47]     "exeErrorCode": 0,
[2025-11-27 03:20:47]     "exeErrorDiag": "",
[2025-11-27 03:20:47]     "pilotErrorCode": 0,
[2025-11-27 03:20:47]     "pilotErrorDiag": "",
[2025-11-27 03:20:47]  *** Listing of results directory ***
[2025-11-27 03:20:47] total 629240
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:00 pilot3.tar.gz
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 03:37 queuedata.json
[2025-11-27 03:20:47] -rwx------. 1 boincer umatlas     36292 Nov 25 03:38 runpilot2-wrapper.sh
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:20:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:45 run_atlas
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:45 job.xml
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 16:45 EVNT.47523935._000002.pool.root.1
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:45 start_atlas.sh
[2025-11-27 03:20:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:45 shared
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas    589945 Nov 26 16:45 input.tar.gz
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:45 boinc_lockfile
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas      2609 Nov 26 16:45 pandaJob.out
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas        57 Nov 26 16:45 setup.sh.local
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 03:20:47] drwx------. 5 boincer umatlas      4096 Nov 26 16:46 pilot3
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas 333022375 Nov 27 03:16 HITS.47523939._000039.pool.root.1
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas       531 Nov 27 03:16 boinc_task_state.xml
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas      1044 Nov 27 03:19 memory_monitor_summary.json
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas      6840 Nov 27 03:19 init_data.xml
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas    730332 Nov 27 03:19 log.47523939._000039.job.log.tgz.1
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas      7812 Nov 27 03:20 heartbeat.json
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas        95 Nov 27 03:20 pilot_heartbeat.json
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas       823 Nov 27 03:20 pilotlog.txt
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:20 boinc_mmap_file
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:20 wrapper_checkpoint.txt
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas   4340192 Nov 27 03:20 log.47523939._000039.job.log.1
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas       357 Nov 27 03:20 output.list
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:20 runtime_log
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas   5089280 Nov 27 03:20 result.tar.gz
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas      9328 Nov 27 03:20 runtime_log.err
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas       657 Nov 27 03:20 JZaKDmUk3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAGMKDmkkXf6m.diag
[2025-11-27 03:20:47] -rw-r--r--. 1 boincer umatlas     21360 Nov 27 03:20 stderr.txt
[2025-11-27 03:20:47] HITS file was successfully produced:
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas 333022375 Nov 27 03:16 shared/HITS.pool.root.1
[2025-11-27 03:20:47]  *** Contents of shared directory: ***
[2025-11-27 03:20:47] total 621092
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 16:45 ATLAS.root_0
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:45 start_atlas.sh
[2025-11-27 03:20:47] -rw-r--r--. 2 boincer umatlas    589945 Nov 26 16:45 input.tar.gz
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas 333022375 Nov 27 03:16 HITS.pool.root.1
[2025-11-27 03:20:47] -rw-------. 1 boincer umatlas   5089280 Nov 27 03:20 result.tar.gz
03:20:48 (1106168): run_atlas exited; CPU time 127339.866480
03:20:48 (1106168): called boinc_finish(0)

</stderr_txt>
]]>

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