Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:58 (3117835): wrapper (7.7.26015): starting
00:03:58 (3117835): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:03:58] Arguments: --nthreads 9
[2025-11-27 00:03:58] Threads: 9
[2025-11-27 00:03:58] Checking for CVMFS
[2025-11-27 00:03:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:00] 2.13.3.0 12004 31000 382364 153347 1 533 29978559 32935936 40293 16776704 0 164086585 99.517 191226621 33060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:00] CVMFS is ok
[2025-11-27 00:04:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:00] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:00] Checking for apptainer binary...
[2025-11-27 00:04:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:00] Running /usr/bin/apptainer --version
[2025-11-27 00:04:00] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:01] c6-12-29-4.aglt2.org
[2025-11-27 00:04:01] apptainer works
[2025-11-27 00:04:01] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:04:01] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:04:01] Starting ATLAS job with PandaID=6896045952
[2025-11-27 00:04:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:37:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:37:35] 2025-11-28 04:36:31,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:37:35] 2025-11-28 04:36:32,424 | INFO     | PID=3124166 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 23:37:35] 2025-11-28 04:36:32,424 | INFO     | .. there are 60 such processes running
[2025-11-27 23:37:35] 2025-11-28 04:36:33,425 | INFO     | time since job start (84707s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:34,198 | INFO     | monitor loop #4427: job 0:6896045952 is in state 'finished'
[2025-11-27 23:37:35] 2025-11-28 04:36:34,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:37:35] 2025-11-28 04:36:35,443 | INFO     | time since job start (84709s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:36,703 | INFO     | monitor loop #4428: job 0:6896045952 is in state 'finished'
[2025-11-27 23:37:35] 2025-11-28 04:36:36,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:37:35] 2025-11-28 04:36:37,460 | INFO     | time since job start (84711s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:39,209 | INFO     | monitor loop #4429: job 0:6896045952 is in state 'finished'
[2025-11-27 23:37:35] 2025-11-28 04:36:39,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:37:35] 2025-11-28 04:36:39,466 | INFO     | time since job start (84713s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:41,483 | INFO     | time since job start (84715s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:41,744 | INFO     | monitor loop #4430: job 0:6896045952 is in state 'finished'
[2025-11-27 23:37:35] 2025-11-28 04:36:41,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:37:35] 2025-11-28 04:36:42,373 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:37:35] 2025-11-28 04:36:42,449 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2605.3254270833336
[2025-11-27 23:37:35] 2025-11-28 04:36:42,558 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896045952/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:37:35] 2025-11-28 04:36:42,558 | INFO     | extracted standard info from prmon json
[2025-11-27 23:37:35] 2025-11-28 04:36:42,558 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:37:35] 2025-11-28 04:36:42,559 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:37:35] 2025-11-28 04:36:42,667 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:37:35] 2025-11-28 04:36:42,669 | INFO     | sum of square deviations: 827370134862.7346
[2025-11-27 23:37:35] 2025-11-28 04:36:42,848 | INFO     | sum of deviations: 5922957207165.402
[2025-11-27 23:37:35] 2025-11-28 04:36:42,874 | INFO     | mean x: 1764262276.3388608
[2025-11-27 23:37:35] 2025-11-28 04:36:42,874 | INFO     | mean y: 3010253.686373468
[2025-11-27 23:37:35] 2025-11-28 04:36:42,874 | INFO     | intersect: -12626947638.986355
[2025-11-27 23:37:35] 2025-11-28 04:36:42,876 | INFO     | chi2: 20.000211250990514
[2025-11-27 23:37:35] 2025-11-28 04:36:42,886 | INFO     | sum of square deviations: 818455835909.2963
[2025-11-27 23:37:35] 2025-11-28 04:36:43,185 | INFO     | sum of deviations: 6420825534311.272
[2025-11-27 23:37:35] 2025-11-28 04:36:43,185 | INFO     | mean x: 1764262123.8509407
[2025-11-27 23:37:35] 2025-11-28 04:36:43,185 | INFO     | mean y: 3018769.049927641
[2025-11-27 23:37:35] 2025-11-28 04:36:43,185 | INFO     | intersect: -13837702742.154207
[2025-11-27 23:37:35] 2025-11-28 04:36:43,187 | INFO     | chi2: 16.775179810904525
[2025-11-27 23:37:35] 2025-11-28 04:36:43,187 | INFO     | current chi2=16.775179810904525 (change=16.124986879457424 %)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,187 | INFO     | right removable region: 1381
[2025-11-27 23:37:35] 2025-11-28 04:36:43,245 | INFO     | sum of square deviations: 818453010999.297
[2025-11-27 23:37:35] 2025-11-28 04:36:43,431 | INFO     | sum of deviations: 5368085972826.707
[2025-11-27 23:37:35] 2025-11-28 04:36:43,432 | INFO     | mean x: 1764262428.8509407
[2025-11-27 23:37:35] 2025-11-28 04:36:43,432 | INFO     | mean y: 3019742.081041968
[2025-11-27 23:37:35] 2025-11-28 04:36:43,432 | INFO     | intersect: -11568459951.220552
[2025-11-27 23:37:35] 2025-11-28 04:36:43,433 | INFO     | chi2: 16.108230417418646
[2025-11-27 23:37:35] 2025-11-28 04:36:43,434 | INFO     | current chi2=16.108230417418646 (change=19.45969862382887 %)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,434 | INFO     | left removable region: 10
[2025-11-27 23:37:35] 2025-11-28 04:36:43,435 | INFO     | sum of square deviations: 799064667510.2864
[2025-11-27 23:37:35] 2025-11-28 04:36:43,472 | INFO     | sum of deviations: 5444117463338.4795
[2025-11-27 23:37:35] 2025-11-28 04:36:43,473 | INFO     | mean x: 1764262398.3778265
[2025-11-27 23:37:35] 2025-11-28 04:36:43,473 | INFO     | mean y: 3039747.4566010213
[2025-11-27 23:37:35] 2025-11-28 04:36:43,473 | INFO     | intersect: -12017078427.517656
[2025-11-27 23:37:35] 2025-11-28 04:36:43,475 | INFO     | chi2: 8.352530740305946
[2025-11-27 23:37:35] 2025-11-28 04:36:43,475 | INFO     | current memory leak: 6.81 B/s (using 1371 data points, chi2=8.35)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | could have reported an average CPU frequency of 2654 MHz (49 samples)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | ..............................
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | . Timing measurements:
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | . get job = 0 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | . initial setup = 3 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,477 | INFO     | . payload setup = 33 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,478 | INFO     | . stage-in = 0 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,478 | INFO     | . payload execution = 84580 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,478 | INFO     | . stage-out = 8 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,478 | INFO     | . log creation = 2 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,478 | INFO     | ..............................
[2025-11-27 23:37:35] 2025-11-28 04:36:43,620 | INFO     | time since job start (84717s) is within the limit (172800.0s)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | 
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | job summary report
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | --------------------------------------------------
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | PanDA job id: 6896045952
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | task id: 47556185
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | errors: (none)
[2025-11-27 23:37:35] 2025-11-28 04:36:43,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | pilot state: finished 
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | transexitcode: 0
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | exeerrorcode: 0
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | exeerrordiag: 
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | exitcode: 0
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | exitmsg: OK
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | cpuconsumptiontime: 268146 s
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | nevents: 1000
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | neventsw: 0
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | pid: 3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | pgrp: 3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | corecount: 9
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | event service: False
[2025-11-27 23:37:35] 2025-11-28 04:36:43,830 | INFO     | sizes: {0: 2284139, 1: 2284167, 2: 2284366, 13: 2284366, 24: 2284422, 27: 2284712, 35: 2284868, 84615: 2347946, 84624: 2356996, 84659: 2357186}
[2025-11-27 23:37:35] 2025-11-28 04:36:43,831 | INFO     | --------------------------------------------------
[2025-11-27 23:37:35] 2025-11-28 04:36:43,831 | INFO     | 
[2025-11-27 23:37:35] 2025-11-28 04:36:43,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:37:35] 2025-11-28 04:36:44,005 | INFO     | job 6896045952 has completed (purged errors)
[2025-11-27 23:37:35] 2025-11-28 04:36:44,005 | INFO     | overall cleanup function is called
[2025-11-27 23:37:35] 2025-11-28 04:36:45,089 | INFO     | --- collectZombieJob: --- 10, [3157934]
[2025-11-27 23:37:35] 2025-11-28 04:36:45,090 | INFO     | zombie collector waiting for pid 3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:45,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:37:35] 2025-11-28 04:36:45,090 | INFO     | collected zombie processes
[2025-11-27 23:37:35] 2025-11-28 04:36:45,090 | INFO     | will attempt to kill all subprocesses of pid=3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:46,277 | INFO     | process IDs to be killed: [3157934] (in reverse order)
[2025-11-27 23:37:35] 2025-11-28 04:36:46,548 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:37:35] 2025-11-28 04:36:46,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:37:35] 2025-11-28 04:36:46,632 | INFO     | did not find any defunct processes belonging to 3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:46,698 | INFO     | did not find any defunct processes belonging to 3157934
[2025-11-27 23:37:35] 2025-11-28 04:36:46,701 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:37:35] 2025-11-28 04:36:46,702 | INFO     | ready for new job
[2025-11-27 23:37:35] 2025-11-28 04:36:46,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:37:35] 2025-11-28 04:36:46,733 | INFO     | ***************************************
[2025-11-27 23:37:35] 2025-11-28 04:36:46,733 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:37:35] 2025-11-28 04:36:46,733 | INFO     | ***************************************
[2025-11-27 23:37:35] 2025-11-28 04:36:46,733 | INFO     | 
[2025-11-27 23:37:35] 2025-11-28 04:36:46,783 | INFO     | architecture information:
[2025-11-27 23:37:35] 2025-11-28 04:36:46,786 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:37:35] 2025-11-28 04:36:46,854 | INFO     | cat /etc/os-release:
[2025-11-27 23:37:35] NAME="CentOS Linux"
[2025-11-27 23:37:35] VERSION="7 (Core)"
[2025-11-27 23:37:35] ID="centos"
[2025-11-27 23:37:35] ID_LIKE="rhel fedora"
[2025-11-27 23:37:35] VERSION_ID="7"
[2025-11-27 23:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:37:35] ANSI_COLOR="0;31"
[2025-11-27 23:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:37:35] HOME_URL="https://www.centos.org/"
[2025-11-27 23:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:37:35] 
[2025-11-27 23:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:37:35] 
[2025-11-27 23:37:35] 2025-11-28 04:36:46,855 | INFO     | ***************************************
[2025-11-27 23:37:35] 2025-11-28 04:36:47,359 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 23:37:35] 2025-11-28 04:36:47,483 | INFO     | sufficient remaining disk space (89434095616 B)
[2025-11-27 23:37:35] 2025-11-28 04:36:47,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:37:35] 2025-11-28 04:36:47,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:37:35] 2025-11-28 04:36:47,484 | INFO     | update_server=False
[2025-11-27 23:37:35] 2025-11-28 04:36:47,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:37:35] 2025-11-28 04:36:47,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:37:35] 2025-11-28 04:36:47,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:37:35] 2025-11-28 04:36:47,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:37:35] 2025-11-28 04:36:47,828 | INFO     | aborting loop
[2025-11-27 23:37:35] 2025-11-28 04:36:48,205 | INFO     | all payload control threads have been joined
[2025-11-27 23:37:35] 2025-11-28 04:36:48,410 | INFO     | all data control threads have been joined
[2025-11-27 23:37:35] 2025-11-28 04:36:48,507 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:48,630 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:48,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:48,833 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:48,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:37:35] 2025-11-28 04:36:49,124 | INFO     | all job control threads have been joined
[2025-11-27 23:37:35] 2025-11-28 04:36:49,195 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,211 | INFO     | [payload] control thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,416 | INFO     | [data] control thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,493 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,501 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,700 | INFO     | [job] validate thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,735 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,856 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,918 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:49,963 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:50,140 | INFO     | [job] control thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:36:51,510 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:37:35] 2025-11-28 04:37:17,834 | INFO     | PID=3124166 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:37:35] 2025-11-28 04:37:17,835 | INFO     | .. there are 60 such processes running
[2025-11-27 23:37:35] 2025-11-28 04:37:17,835 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:37:35] 2025-11-28 04:37:17,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:37:35] 2025-11-28 04:37:17,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:37:35] 2025-11-28 04:37:26,406 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:37:35] 2025-11-28 04:37:27,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642575177536)>', '<ExcThread(monitor, started 140642227304192)>']
[2025-11-27 23:37:35] 2025-11-28 04:37:27,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:37:35] 2025-11-28 04:37:27,902 | INFO     | [monitor] control thread has ended
[2025-11-27 23:37:35] 2025-11-28 04:37:32,583 | INFO     | all workflow threads have been joined
[2025-11-27 23:37:35] 2025-11-28 04:37:32,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:37:35] 2025-11-28 04:37:32,584 | INFO     | traces error code: 0
[2025-11-27 23:37:35] 2025-11-28 04:37:32,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:37:35] 2025-11-28 04:37:33,743 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:37:35] 2025-11-28 04:37:33,772 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:37:35] 2025-11-28 04:37:33,800 [wrapper] pilotpid: 3124166
[2025-11-27 23:37:35] 2025-11-28 04:37:33,876 [wrapper] Pilot exit status: 0
[2025-11-27 23:37:35] 2025-11-28 04:37:34,000 [wrapper] pandaids: 6896045952
[2025-11-27 23:37:35] 2025-11-28 04:37:34,263 [wrapper] cleanup supervisor_pilot 2026110 3124167
[2025-11-27 23:37:35] 2025-11-28 04:37:34,288 [wrapper] Test setup, not cleaning
[2025-11-27 23:37:35] 2025-11-28 04:37:34,305 [wrapper] apfmon messages muted
[2025-11-27 23:37:35] 2025-11-28 04:37:34,344 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:37:35] 2025-11-28 04:37:34,362 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:37:35]  *** Error codes and diagnostics ***
[2025-11-27 23:37:35]     "exeErrorCode": 0,
[2025-11-27 23:37:35]     "exeErrorDiag": "",
[2025-11-27 23:37:35]     "pilotErrorCode": 0,
[2025-11-27 23:37:35]     "pilotErrorDiag": "",
[2025-11-27 23:37:35]  *** Listing of results directory ***
[2025-11-27 23:37:35] total 1343396
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:11 queuedata.json
[2025-11-27 23:37:35] -rwx------. 1 boincer umatlas     36292 Nov 24 14:12 runpilot2-wrapper.sh
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:37:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas 410263963 Nov 27 00:03 EVNT.47483658._004241.pool.root.1
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 23:37:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas    611282 Nov 27 00:03 input.tar.gz
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 00:04 pandaJob.out
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 23:37:35] drwx------. 7 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:22 boinc_task_state.xml
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 23:31 init_data.xml
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas 936499981 Nov 27 23:35 HITS.47556185._000049.pool.root.1
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas      1059 Nov 27 23:35 memory_monitor_summary.json
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas   2507192 Nov 27 23:36 log.47556185._000049.job.log.tgz.1
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas        95 Nov 27 23:36 pilot_heartbeat.json
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas      8627 Nov 27 23:36 heartbeat.json
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas      4824 Nov 27 23:37 pilotlog.txt
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:37 boinc_mmap_file
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:37 wrapper_checkpoint.txt
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas   9943937 Nov 27 23:37 log.47556185._000049.job.log.1
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas       353 Nov 27 23:37 output.list
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:37 runtime_log
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas  12472320 Nov 27 23:37 result.tar.gz
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 23:37 runtime_log.err
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas       662 Nov 27 23:37 npdNDmnArh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgAJKDmLJBTpm.diag
[2025-11-27 23:37:35] -rw-r--r--. 1 boincer umatlas     21883 Nov 27 23:37 stderr.txt
[2025-11-27 23:37:35] HITS file was successfully produced:
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas 936499981 Nov 27 23:35 shared/HITS.pool.root.1
[2025-11-27 23:37:35]  *** Contents of shared directory: ***
[2025-11-27 23:37:35] total 1328008
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas 410263963 Nov 27 00:03 ATLAS.root_0
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 23:37:35] -rw-r--r--. 2 boincer umatlas    611282 Nov 27 00:03 input.tar.gz
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas 936499981 Nov 27 23:35 HITS.pool.root.1
[2025-11-27 23:37:35] -rw-------. 1 boincer umatlas  12472320 Nov 27 23:37 result.tar.gz
23:37:57 (3117835): run_atlas exited; CPU time 271819.074598
23:37:57 (3117835): called boinc_finish(0)

</stderr_txt>
]]>

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