Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:56:45 (4012152): wrapper (7.7.26015): starting
21:56:45 (4012152): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:56:45] Arguments: --nthreads 8
[2025-11-26 21:56:45] Threads: 8
[2025-11-26 21:56:45] Checking for CVMFS
[2025-11-26 21:56:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:56:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:56:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:56:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:56:47] 2.13.3.0 11322 30918 349676 153343 0 628 28839728 32935937 22669 16776704 0 56102306 99.579 59843929 39354 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 21:56:47] CVMFS is ok
[2025-11-26 21:56:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:56:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:56:47] Further information can be found at the LHC@home message board.
[2025-11-26 21:56:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:56:47] Checking for apptainer binary...
[2025-11-26 21:56:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:56:47] Running /usr/bin/apptainer --version
[2025-11-26 21:56:47] apptainer version 1.4.4-1.el9
[2025-11-26 21:56:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:56:47] c6-1-26-4.aglt2.org
[2025-11-26 21:56:47] apptainer works
[2025-11-26 21:56:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:56:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:56:47] Starting ATLAS job with PandaID=6895674623
[2025-11-26 21:56:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:56:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:56:05] 2025-11-28 02:54:52,559 | INFO     | monitor loop #4991: job 0:6895674623 is in state 'finished'
[2025-11-27 21:56:05] 2025-11-28 02:54:52,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:05] 2025-11-28 02:54:53,540 | INFO     | time since job start (86252s) is within the limit (172800.0s)
[2025-11-27 21:56:05] 2025-11-28 02:54:55,093 | INFO     | monitor loop #4992: job 0:6895674623 is in state 'finished'
[2025-11-27 21:56:05] 2025-11-28 02:54:55,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:05] 2025-11-28 02:54:55,612 | INFO     | time since job start (86254s) is within the limit (172800.0s)
[2025-11-27 21:56:05] 2025-11-28 02:54:57,600 | INFO     | monitor loop #4993: job 0:6895674623 is in state 'finished'
[2025-11-27 21:56:05] 2025-11-28 02:54:57,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:05] 2025-11-28 02:54:57,619 | INFO     | time since job start (86256s) is within the limit (172800.0s)
[2025-11-27 21:56:05] 2025-11-28 02:55:00,107 | INFO     | monitor loop #4994: job 0:6895674623 is in state 'finished'
[2025-11-27 21:56:05] 2025-11-28 02:55:00,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:05] 2025-11-28 02:55:01,883 | INFO     | PID=4016085 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:56:05] 2025-11-28 02:55:01,884 | INFO     | .. there are 38 such processes running
[2025-11-27 21:56:05] 2025-11-28 02:55:02,626 | INFO     | monitor loop #4995: job 0:6895674623 is in state 'finished'
[2025-11-27 21:56:05] 2025-11-28 02:55:02,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:05] 2025-11-28 02:55:02,884 | INFO     | time since job start (86261s) is within the limit (172800.0s)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,691 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:56:05] 2025-11-28 02:55:04,741 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2971.9756071428574
[2025-11-27 21:56:05] 2025-11-28 02:55:04,754 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895674623/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,754 | INFO     | extracted standard info from prmon json
[2025-11-27 21:56:05] 2025-11-28 02:55:04,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:56:05] 2025-11-28 02:55:04,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:56:05] 2025-11-28 02:55:04,781 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:56:05] 2025-11-28 02:55:04,783 | INFO     | sum of square deviations: 874773867633.8982
[2025-11-27 21:56:05] 2025-11-28 02:55:04,826 | INFO     | sum of deviations: 2300304099411.0215
[2025-11-27 21:56:05] 2025-11-28 02:55:04,826 | INFO     | mean x: 1764255365.3248408
[2025-11-27 21:56:05] 2025-11-28 02:55:04,827 | INFO     | mean y: 2964333.8343949043
[2025-11-27 21:56:05] 2025-11-28 02:55:04,827 | INFO     | intersect: -4636319027.752111
[2025-11-27 21:56:05] 2025-11-28 02:55:04,829 | INFO     | chi2: 13.449191338997593
[2025-11-27 21:56:05] 2025-11-28 02:55:04,831 | INFO     | sum of square deviations: 865520720895.0898
[2025-11-27 21:56:05] 2025-11-28 02:55:04,875 | INFO     | sum of deviations: 2774274997176.79
[2025-11-27 21:56:05] 2025-11-28 02:55:04,876 | INFO     | mean x: 1764255212.8295455
[2025-11-27 21:56:05] 2025-11-28 02:55:04,876 | INFO     | mean y: 2972143.774147727
[2025-11-27 21:56:05] 2025-11-28 02:55:04,877 | INFO     | intersect: -5652038773.272508
[2025-11-27 21:56:05] 2025-11-28 02:55:04,879 | INFO     | chi2: 10.404058941399194
[2025-11-27 21:56:05] 2025-11-28 02:55:04,879 | INFO     | current chi2=10.404058941399194 (change=22.641750874408793 %)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,879 | INFO     | right removable region: 1407
[2025-11-27 21:56:05] 2025-11-28 02:55:04,881 | INFO     | sum of square deviations: 865519664925.7489
[2025-11-27 21:56:05] 2025-11-28 02:55:04,917 | INFO     | time since job start (86263s) is within the limit (172800.0s)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,939 | INFO     | sum of deviations: 1890195822917.3794
[2025-11-27 21:56:05] 2025-11-28 02:55:04,940 | INFO     | mean x: 1764255517.8288352
[2025-11-27 21:56:05] 2025-11-28 02:55:04,940 | INFO     | mean y: 2971086.375
[2025-11-27 21:56:05] 2025-11-28 02:55:04,940 | INFO     | intersect: -3849960909.855365
[2025-11-27 21:56:05] 2025-11-28 02:55:04,941 | INFO     | chi2: 11.117479208367312
[2025-11-27 21:56:05] 2025-11-28 02:55:04,942 | INFO     | current chi2=11.117479208367312 (change=17.33719204268582 %)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,942 | INFO     | left removable region: 10
[2025-11-27 21:56:05] 2025-11-28 02:55:04,943 | INFO     | sum of square deviations: 845392309447.2188
[2025-11-27 21:56:05] 2025-11-28 02:55:04,978 | INFO     | sum of deviations: 2343386397018.928
[2025-11-27 21:56:05] 2025-11-28 02:55:04,978 | INFO     | mean x: 1764255487.3350036
[2025-11-27 21:56:05] 2025-11-28 02:55:04,978 | INFO     | mean y: 2982271.3142448105
[2025-11-27 21:56:05] 2025-11-28 02:55:04,978 | INFO     | intersect: -4887448199.469415
[2025-11-27 21:56:05] 2025-11-28 02:55:04,979 | INFO     | chi2: 7.440318896841342
[2025-11-27 21:56:05] 2025-11-28 02:55:04,980 | INFO     | current memory leak: 2.77 B/s (using 1397 data points, chi2=7.44)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,981 | INFO     | could have reported an average CPU frequency of 2926 MHz (50 samples)
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | ..............................
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . Timing measurements:
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . get job = 0 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . initial setup = 3 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . payload setup = 11 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . stage-in = 0 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . payload execution = 86180 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . stage-out = 6 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | . log creation = 1 s
[2025-11-27 21:56:05] 2025-11-28 02:55:04,982 | INFO     | ..............................
[2025-11-27 21:56:05] 2025-11-28 02:55:05,145 | INFO     | 
[2025-11-27 21:56:05] 2025-11-28 02:55:05,145 | INFO     | job summary report
[2025-11-27 21:56:05] 2025-11-28 02:55:05,145 | INFO     | --------------------------------------------------
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | PanDA job id: 6895674623
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | task id: 47556149
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | errors: (none)
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | pilot state: finished 
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | transexitcode: 0
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | exeerrorcode: 0
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | exeerrordiag: 
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | exitcode: 0
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | exitmsg: OK
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | cpuconsumptiontime: 245803 s
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | nevents: 1000
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | neventsw: 0
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | pid: 4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:05,146 | INFO     | pgrp: 4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | corecount: 8
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | event service: False
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 16: 2284638, 23: 2284666, 86191: 2349269, 86192: 2349268, 86200: 2358318, 86204: 2358374, 86226: 2358620}
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | --------------------------------------------------
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | 
[2025-11-27 21:56:05] 2025-11-28 02:55:05,147 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:56:05] 2025-11-28 02:55:05,240 | INFO     | job 6895674623 has completed (purged errors)
[2025-11-27 21:56:05] 2025-11-28 02:55:05,241 | INFO     | overall cleanup function is called
[2025-11-27 21:56:05] 2025-11-28 02:55:06,297 | INFO     | --- collectZombieJob: --- 10, [4024738]
[2025-11-27 21:56:05] 2025-11-28 02:55:06,297 | INFO     | zombie collector waiting for pid 4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:06,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:56:05] 2025-11-28 02:55:06,298 | INFO     | collected zombie processes
[2025-11-27 21:56:05] 2025-11-28 02:55:06,298 | INFO     | will attempt to kill all subprocesses of pid=4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:07,356 | INFO     | process IDs to be killed: [4024738] (in reverse order)
[2025-11-27 21:56:05] 2025-11-28 02:55:07,638 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:56:05] 2025-11-28 02:55:07,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:56:05] 2025-11-28 02:55:07,670 | INFO     | did not find any defunct processes belonging to 4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:07,707 | INFO     | did not find any defunct processes belonging to 4024738
[2025-11-27 21:56:05] 2025-11-28 02:55:07,712 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:56:05] 2025-11-28 02:55:07,712 | INFO     | ready for new job
[2025-11-27 21:56:05] 2025-11-28 02:55:07,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:56:05] 2025-11-28 02:55:07,724 | INFO     | ***************************************
[2025-11-27 21:56:05] 2025-11-28 02:55:07,724 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:56:05] 2025-11-28 02:55:07,725 | INFO     | ***************************************
[2025-11-27 21:56:05] 2025-11-28 02:55:07,725 | INFO     | 
[2025-11-27 21:56:05] 2025-11-28 02:55:07,727 | INFO     | architecture information:
[2025-11-27 21:56:05] 2025-11-28 02:55:07,734 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:56:05] 2025-11-28 02:55:07,785 | INFO     | cat /etc/os-release:
[2025-11-27 21:56:05] NAME="CentOS Linux"
[2025-11-27 21:56:05] VERSION="7 (Core)"
[2025-11-27 21:56:05] ID="centos"
[2025-11-27 21:56:05] ID_LIKE="rhel fedora"
[2025-11-27 21:56:05] VERSION_ID="7"
[2025-11-27 21:56:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:56:05] ANSI_COLOR="0;31"
[2025-11-27 21:56:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:56:05] HOME_URL="https://www.centos.org/"
[2025-11-27 21:56:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:56:05] 
[2025-11-27 21:56:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:56:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:56:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:56:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:56:05] 
[2025-11-27 21:56:05] 2025-11-28 02:55:07,785 | INFO     | ***************************************
[2025-11-27 21:56:05] 2025-11-28 02:55:08,289 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 21:56:05] 2025-11-28 02:55:08,349 | INFO     | sufficient remaining disk space (72237449216 B)
[2025-11-27 21:56:05] 2025-11-28 02:55:08,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:56:05] 2025-11-28 02:55:08,349 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:56:05] 2025-11-28 02:55:08,349 | INFO     | update_server=False
[2025-11-27 21:56:05] 2025-11-28 02:55:08,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:56:05] 2025-11-28 02:55:08,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:56:05] 2025-11-28 02:55:08,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:56:05] 2025-11-28 02:55:08,651 | INFO     | aborting loop
[2025-11-27 21:56:05] 2025-11-28 02:55:09,015 | INFO     | all data control threads have been joined
[2025-11-27 21:56:05] 2025-11-28 02:55:09,128 | INFO     | all payload control threads have been joined
[2025-11-27 21:56:05] 2025-11-28 02:55:09,355 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,556 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,569 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,587 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,597 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,657 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,717 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:09,813 | INFO     | all job control threads have been joined
[2025-11-27 21:56:05] 2025-11-28 02:55:10,021 | INFO     | [data] control thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:56:05] 2025-11-28 02:55:10,134 | INFO     | [payload] control thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,358 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,499 | INFO     | [job] validate thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,805 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,815 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:10,819 | INFO     | [job] control thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:11,106 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:11,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:56:05] 2025-11-28 02:55:15,301 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:56:05] 2025-11-28 02:55:38,588 | INFO     | PID=4016085 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:56:05] 2025-11-28 02:55:38,588 | INFO     | .. there are 38 such processes running
[2025-11-27 21:56:05] 2025-11-28 02:55:38,588 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:56:05] 2025-11-28 02:55:38,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:56:05] 2025-11-28 02:55:38,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:56:05] 2025-11-28 02:55:58,874 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:56:05] 2025-11-28 02:55:59,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976113166144)>', '<ExcThread(monitor, started 139975257483008)>']
[2025-11-27 21:56:05] 2025-11-28 02:55:59,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:56:05] 2025-11-28 02:55:59,721 | INFO     | [monitor] control thread has ended
[2025-11-27 21:56:05] 2025-11-28 02:56:04,155 | INFO     | all workflow threads have been joined
[2025-11-27 21:56:05] 2025-11-28 02:56:04,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:56:05] 2025-11-28 02:56:04,156 | INFO     | traces error code: 0
[2025-11-27 21:56:05] 2025-11-28 02:56:04,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:56:05] 2025-11-28 02:56:04,817 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:56:05] 2025-11-28 02:56:04,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:56:05] 2025-11-28 02:56:04,824 [wrapper] pilotpid: 4016085
[2025-11-27 21:56:05] 2025-11-28 02:56:04,827 [wrapper] Pilot exit status: 0
[2025-11-27 21:56:05] 2025-11-28 02:56:04,931 [wrapper] pandaids: 6895674623
[2025-11-27 21:56:05] 2025-11-28 02:56:05,159 [wrapper] cleanup supervisor_pilot  280171 4016086
[2025-11-27 21:56:05] 2025-11-28 02:56:05,163 [wrapper] Test setup, not cleaning
[2025-11-27 21:56:05] 2025-11-28 02:56:05,168 [wrapper] apfmon messages muted
[2025-11-27 21:56:05] 2025-11-28 02:56:05,171 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:56:05] 2025-11-28 02:56:05,175 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:56:05]  *** Error codes and diagnostics ***
[2025-11-27 21:56:05]     "exeErrorCode": 0,
[2025-11-27 21:56:05]     "exeErrorDiag": "",
[2025-11-27 21:56:05]     "pilotErrorCode": 0,
[2025-11-27 21:56:05]     "pilotErrorDiag": "",
[2025-11-27 21:56:05]  *** Listing of results directory ***
[2025-11-27 21:56:05] total 1316212
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 09:01 pilot3.tar.gz
[2025-11-27 21:56:05] -rwx------. 1 boincer umatlas     36292 Nov 24 09:43 runpilot2-wrapper.sh
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 09:43 queuedata.json
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:56:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:56 run_atlas
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:56 job.xml
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas 408868696 Nov 26 21:56 EVNT.47483658._001363.pool.root.1
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 21:56 input.tar.gz
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:56 start_atlas.sh
[2025-11-27 21:56:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:56 shared
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:56 boinc_lockfile
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 21:56 pandaJob.out
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas        57 Nov 26 21:56 setup.sh.local
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas    991554 Nov 26 21:57 agis_schedconf.cvmfs.json
[2025-11-27 21:56:05] drwx------. 5 boincer umatlas      4096 Nov 26 21:57 pilot3
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:23 boinc_task_state.xml
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas 908894315 Nov 27 21:53 HITS.47556149._003495.pool.root.1
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas      1058 Nov 27 21:54 memory_monitor_summary.json
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas   2427874 Nov 27 21:54 log.47556149._003495.job.log.tgz.1
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas        95 Nov 27 21:54 pilot_heartbeat.json
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas      8628 Nov 27 21:55 heartbeat.json
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas      6846 Nov 27 21:55 init_data.xml
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:56 boinc_mmap_file
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:56 wrapper_checkpoint.txt
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas      4824 Nov 27 21:56 pilotlog.txt
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas  10628872 Nov 27 21:56 log.47556149._003495.job.log.1
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas       353 Nov 27 21:56 output.list
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:56 runtime_log
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas  13076480 Nov 27 21:56 result.tar.gz
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 21:56 runtime_log.err
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas       662 Nov 27 21:56 OEtMDmxxmh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmu5IKDmRACiyn.diag
[2025-11-27 21:56:05] -rw-r--r--. 1 boincer umatlas     21889 Nov 27 21:56 stderr.txt
[2025-11-27 21:56:05] HITS file was successfully produced:
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas 908894315 Nov 27 21:53 shared/HITS.pool.root.1
[2025-11-27 21:56:05]  *** Contents of shared directory: ***
[2025-11-27 21:56:05] total 1300260
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas 408868696 Nov 26 21:56 ATLAS.root_0
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 21:56 input.tar.gz
[2025-11-27 21:56:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 21:56 start_atlas.sh
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas 908894315 Nov 27 21:53 HITS.pool.root.1
[2025-11-27 21:56:05] -rw-------. 1 boincer umatlas  13076480 Nov 27 21:56 result.tar.gz
21:56:07 (4012152): run_atlas exited; CPU time 247960.759803
21:56:07 (4012152): called boinc_finish(0)

</stderr_txt>
]]>

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