Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:02:41 (12365): wrapper (7.7.26015): starting
01:02:41 (12365): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:02:41] Arguments: --nthreads 8
[2025-11-27 01:02:41] Threads: 8
[2025-11-27 01:02:41] Checking for CVMFS
[2025-11-27 01:02:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:02:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:02:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:02:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:02:41] 2.11.0.0 3999 66848 115860 153340 3 87 2069249 4096001 346 130560 1 9294113 99.724 4577290 515 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:02:41] CVMFS is ok
[2025-11-27 01:02:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:02:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:02:41] Further information can be found at the LHC@home message board.
[2025-11-27 01:02:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:02:41] Checking for apptainer binary...
[2025-11-27 01:02:41] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:02:41] apptainer is not installed, using version from CVMFS
[2025-11-27 01:02:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:02:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927683/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node043
[2025-11-27 01:02:41] apptainer works
[2025-11-27 01:02:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:02:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:02:41] Starting ATLAS job with PandaID=6895328057
[2025-11-27 01:02:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927683/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:30:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:30:35] 2025-11-27 04:30:02,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:30:35] 2025-11-27 04:30:02,434 | INFO     | time since job start (16036s) is within the limit (172800.0s)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,484 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:30:35] 2025-11-27 04:30:03,489 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2864.208015625
[2025-11-27 05:30:35] 2025-11-27 04:30:03,494 | INFO     | using path: /tmp/job_10927683/atlas/pilot/slots/0/PanDA_Pilot-6895328057/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,494 | INFO     | extracted standard info from prmon json
[2025-11-27 05:30:35] 2025-11-27 04:30:03,494 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:30:35] 2025-11-27 04:30:03,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:30:35] 2025-11-27 04:30:03,497 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:30:35] 2025-11-27 04:30:03,497 | INFO     | sum of square deviations: 5640782972.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | sum of deviations: 127299503709.99991
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | mean x: 1764209775.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | mean y: 2889655.053231939
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | intersect: -39811269108.47784
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | chi2: 3.029020228873749
[2025-11-27 05:30:35] 2025-11-27 04:30:03,498 | INFO     | sum of square deviations: 5325139844.5
[2025-11-27 05:30:35] 2025-11-27 04:30:03,499 | INFO     | sum of deviations: 182441281114.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,499 | INFO     | mean x: 1764209622.5
[2025-11-27 05:30:35] 2025-11-27 04:30:03,499 | INFO     | mean y: 2916174.5426356588
[2025-11-27 05:30:35] 2025-11-27 04:30:03,499 | INFO     | intersect: -60439564789.59204
[2025-11-27 05:30:35] 2025-11-27 04:30:03,499 | INFO     | chi2: 1.4618082268841588
[2025-11-27 05:30:35] 2025-11-27 04:30:03,500 | INFO     | current chi2=1.4618082268841588 (change=51.73989883099299 %)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,500 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | sum of deviations: 176192520658.00003
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | mean x: 1764209470.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | mean y: 2913036.7588932808
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | intersect: -61899049082.96916
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | chi2: 1.4581537646225975
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | current chi2=1.4581537646225975 (change=0.2499960114023148 %)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | right removable region: 252
[2025-11-27 05:30:35] 2025-11-27 04:30:03,501 | INFO     | sum of square deviations: 5325139844.5
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | sum of deviations: 77565492999.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | mean x: 1764209927.5
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | mean y: 2913505.88372093
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | intersect: -25694404644.662655
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | chi2: 1.652281733885521
[2025-11-27 05:30:35] 2025-11-27 04:30:03,502 | INFO     | current chi2=1.652281733885521 (change=45.45161111387253 %)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,503 | INFO     | sum of square deviations: 5021496942.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | sum of deviations: 64413417747.99999
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | mean x: 1764210080.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | mean y: 2920106.2134387353
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | intersect: -22627542919.222866
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | chi2: 1.6277753277392544
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | current chi2=1.6277753277392544 (change=1.4831856846009577 %)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | left removable region: 20
[2025-11-27 05:30:35] 2025-11-27 04:30:03,504 | INFO     | sum of square deviations: 3871990738.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | sum of deviations: 91155123873.0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | mean x: 1764210049.5
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | mean y: 2957889.6551724137
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | intersect: -41530402203.87405
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | chi2: 0.0304788670716329
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | current memory leak: 23.54 B/s (using 232 data points, chi2=0.03)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | could have reported an average CPU frequency of 3012 MHz (12 samples)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | ..............................
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | . Timing measurements:
[2025-11-27 05:30:35] 2025-11-27 04:30:03,505 | INFO     | . get job = 0 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . initial setup = 1 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . payload setup = 2 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . stage-in = 0 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . payload execution = 16013 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . stage-out = 1 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | . log creation = 0 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,506 | INFO     | ..............................
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | 
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | job summary report
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | --------------------------------------------------
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | PanDA job id: 6895328057
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | task id: 47556149
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | errors: (none)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | pilot state: finished 
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | transexitcode: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | exeerrorcode: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | exeerrordiag: 
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | exitcode: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | exitmsg: OK
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | cpuconsumptiontime: 120933 s
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | nevents: 1000
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | neventsw: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | pid: 29631
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | pgrp: 29631
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | corecount: 8
[2025-11-27 05:30:35] 2025-11-27 04:30:03,554 | INFO     | event service: False
[2025-11-27 05:30:35] 2025-11-27 04:30:03,555 | INFO     | sizes: {0: 2284438, 2: 2284700, 11: 2284728, 16019: 2317089, 16020: 2317088, 16021: 2326352, 16025: 2326542}
[2025-11-27 05:30:35] 2025-11-27 04:30:03,555 | INFO     | --------------------------------------------------
[2025-11-27 05:30:35] 2025-11-27 04:30:03,555 | INFO     | 
[2025-11-27 05:30:35] 2025-11-27 04:30:03,555 | INFO     | executing command: ls -lF /tmp/job_10927683/atlas/pilot/slots/0
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | job 6895328057 has completed (purged errors)
[2025-11-27 05:30:35] 2025-11-27 04:30:03,565 | INFO     | overall cleanup function is called
[2025-11-27 05:30:35] 2025-11-27 04:30:04,572 | INFO     | --- collectZombieJob: --- 10, [29631]
[2025-11-27 05:30:35] 2025-11-27 04:30:04,572 | INFO     | zombie collector waiting for pid 29631
[2025-11-27 05:30:35] 2025-11-27 04:30:04,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:30:35] 2025-11-27 04:30:04,572 | INFO     | collected zombie processes
[2025-11-27 05:30:35] 2025-11-27 04:30:04,572 | INFO     | will attempt to kill all subprocesses of pid=29631
[2025-11-27 05:30:35] 2025-11-27 04:30:04,694 | INFO     | process IDs to be killed: [29631] (in reverse order)
[2025-11-27 05:30:35] 2025-11-27 04:30:04,740 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:30:35] 2025-11-27 04:30:04,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:30:35] 2025-11-27 04:30:04,745 | INFO     | did not find any defunct processes belonging to 29631
[2025-11-27 05:30:35] 2025-11-27 04:30:04,749 | INFO     | did not find any defunct processes belonging to 29631
[2025-11-27 05:30:35] 2025-11-27 04:30:04,749 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:30:35] 2025-11-27 04:30:04,749 | INFO     | ready for new job
[2025-11-27 05:30:35] 2025-11-27 04:30:04,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:30:35] 2025-11-27 04:30:04,750 | INFO     | ***************************************
[2025-11-27 05:30:35] 2025-11-27 04:30:04,750 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:30:35] 2025-11-27 04:30:04,750 | INFO     | ***************************************
[2025-11-27 05:30:35] 2025-11-27 04:30:04,751 | INFO     | 
[2025-11-27 05:30:35] 2025-11-27 04:30:04,765 | INFO     | architecture information:
[2025-11-27 05:30:35] 2025-11-27 04:30:04,765 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:30:35] 2025-11-27 04:30:04,771 | INFO     | cat /etc/os-release:
[2025-11-27 05:30:35] NAME="CentOS Linux"
[2025-11-27 05:30:35] VERSION="7 (Core)"
[2025-11-27 05:30:35] ID="centos"
[2025-11-27 05:30:35] ID_LIKE="rhel fedora"
[2025-11-27 05:30:35] VERSION_ID="7"
[2025-11-27 05:30:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:30:35] ANSI_COLOR="0;31"
[2025-11-27 05:30:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:30:35] HOME_URL="https://www.centos.org/"
[2025-11-27 05:30:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:30:35] 
[2025-11-27 05:30:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:30:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:30:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:30:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:30:35] 
[2025-11-27 05:30:35] 2025-11-27 04:30:04,771 | INFO     | ***************************************
[2025-11-27 05:30:35] 2025-11-27 04:30:05,274 | INFO     | executing command: df -mP /tmp/job_10927683/atlas/pilot/slots/0
[2025-11-27 05:30:35] 2025-11-27 04:30:05,281 | INFO     | sufficient remaining disk space (217761972224 B)
[2025-11-27 05:30:35] 2025-11-27 04:30:05,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:30:35] 2025-11-27 04:30:05,282 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:30:35] 2025-11-27 04:30:05,282 | INFO     | update_server=False
[2025-11-27 05:30:35] 2025-11-27 04:30:05,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:30:35] 2025-11-27 04:30:05,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:30:35] 2025-11-27 04:30:05,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:30:35] 2025-11-27 04:30:05,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:30:35] 2025-11-27 04:30:05,880 | INFO     | aborting loop
[2025-11-27 05:30:35] 2025-11-27 04:30:06,104 | INFO     | all data control threads have been joined
[2025-11-27 05:30:35] 2025-11-27 04:30:06,135 | INFO     | all payload control threads have been joined
[2025-11-27 05:30:35] 2025-11-27 04:30:06,287 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,287 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:30:35] 2025-11-27 04:30:06,372 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,385 | INFO     | all job control threads have been joined
[2025-11-27 05:30:35] 2025-11-27 04:30:06,492 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,560 | INFO     | [job] validate thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,827 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:06,885 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,006 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,109 | INFO     | [data] control thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,140 | INFO     | [payload] control thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,364 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,390 | INFO     | [job] control thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,758 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:07,787 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:10,333 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:12,812 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:30:35] 2025-11-27 04:30:15,479 | INFO     | job.realtimelogging is not enabled
[2025-11-27 05:30:35] 2025-11-27 04:30:16,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:30:35] 2025-11-27 04:30:18,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2025-11-27 05:30:35] 2025-11-27 04:30:23,470 | INFO     | all workflow threads have been joined
[2025-11-27 05:30:35] 2025-11-27 04:30:23,471 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:30:35] 2025-11-27 04:30:23,471 | INFO     | traces error code: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:23,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:30:35] 2025-11-27 04:30:35,639 | INFO     | PID=22899 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:30:35] 2025-11-27 04:30:35,639 | INFO     | .. there are 6 such processes running
[2025-11-27 05:30:35] 2025-11-27 04:30:35,639 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:30:35] 2025-11-27 04:30:35,639 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:30:35] 2025-11-27 04:30:35,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:30:35] 2025-11-27 04:30:35,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:30:35] 2025-11-27 04:30:35,640 | INFO     | [monitor] control thread has ended
[2025-11-27 05:30:35] 2025-11-27 04:30:35,691 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:30:35] 2025-11-27 04:30:35,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:30:35] 2025-11-27 04:30:35,694 [wrapper] pilotpid: 22899
[2025-11-27 05:30:35] 2025-11-27 04:30:35,695 [wrapper] Pilot exit status: 0
[2025-11-27 05:30:35] 2025-11-27 04:30:35,699 [wrapper] pandaids: 6895328057
[2025-11-27 05:30:35] 2025-11-27 04:30:35,726 [wrapper] cleanup supervisor_pilot 32465 22900
[2025-11-27 05:30:35] 2025-11-27 04:30:35,727 [wrapper] Test setup, not cleaning
[2025-11-27 05:30:35] 2025-11-27 04:30:35,728 [wrapper] apfmon messages muted
[2025-11-27 05:30:35] 2025-11-27 04:30:35,729 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:30:35] 2025-11-27 04:30:35,730 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:30:35]  *** Error codes and diagnostics ***
[2025-11-27 05:30:35]     "exeErrorCode": 0,
[2025-11-27 05:30:35]     "exeErrorDiag": "",
[2025-11-27 05:30:35]     "pilotErrorCode": 0,
[2025-11-27 05:30:35]     "pilotErrorDiag": "",
[2025-11-27 05:30:35]  *** Listing of results directory ***
[2025-11-27 05:30:35] total 1304548
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user    576529 Nov 21 16:53 pilot3.tar.gz
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      5112 Nov 21 17:14 queuedata.json
[2025-11-27 05:30:35] -rwx------ 1 mf493845 unix-user     36292 Nov 21 17:15 runpilot2-wrapper.sh
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       100 Nov 26 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:30:35] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:19 run_atlas
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       105 Nov 26 23:19 job.xml
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user 406933988 Nov 27 01:02 EVNT.47483658._001026.pool.root.1
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:02 start_atlas.sh
[2025-11-27 05:30:35] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:02 shared
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user    590104 Nov 27 01:02 input.tar.gz
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      6390 Nov 27 01:02 init_data.xml
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user         0 Nov 27 01:02 boinc_setup_complete
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:02 boinc_mmap_file
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user         0 Nov 27 01:02 boinc_lockfile
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      2784 Nov 27 01:02 pandaJob.out
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user    991538 Nov 27 01:02 agis_schedconf.cvmfs.json
[2025-11-27 05:30:35] drwx------ 5 mf493845 unix-user       440 Nov 27 01:02 pilot3
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user 917270735 Nov 27 05:29 HITS.47556149._000128.pool.root.1
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user        95 Nov 27 05:29 pilot_heartbeat.json
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      1038 Nov 27 05:29 memory_monitor_summary.json
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user   1559651 Nov 27 05:30 log.47556149._000128.job.log.tgz.1
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      8568 Nov 27 05:30 heartbeat.json
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       820 Nov 27 05:30 pilotlog.txt
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user   2320204 Nov 27 05:30 log.47556149._000128.job.log.1
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       353 Nov 27 05:30 output.list
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       620 Nov 27 05:30 runtime_log
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user   3901440 Nov 27 05:30 result.tar.gz
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user       650 Nov 27 05:30 wDoKDmjyig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRjHKDmWo815m.diag
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:30 runtime_log.err
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user     21678 Nov 27 05:30 stderr.txt
[2025-11-27 05:30:35] HITS file was successfully produced:
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user 917270735 Nov 27 05:29 shared/HITS.pool.root.1
[2025-11-27 05:30:35]  *** Contents of shared directory: ***
[2025-11-27 05:30:35] total 1297584
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user 406933988 Nov 27 01:02 ATLAS.root_0
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:02 start_atlas.sh
[2025-11-27 05:30:35] -rw-r--r-- 2 mf493845 unix-user    590104 Nov 27 01:02 input.tar.gz
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user 917270735 Nov 27 05:29 HITS.pool.root.1
[2025-11-27 05:30:35] -rw------- 1 mf493845 unix-user   3901440 Nov 27 05:30 result.tar.gz
05:30:37 (12365): run_atlas exited; CPU time 121150.585421
05:30:37 (12365): called boinc_finish(0)

</stderr_txt>
]]>

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