Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:08:50 (7661): wrapper (7.7.26015): starting
00:08:50 (7661): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:08:50] Arguments: --nthreads 8
[2025-11-27 00:08:50] Threads: 8
[2025-11-27 00:08:50] Checking for CVMFS
[2025-11-27 00:08:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:08:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:08:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:08:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:08:50] 2.11.0.0 4200 66189 100092 153339 3 49 2284305 4096001 943 130560 1 9074121 99.734 4768001 534 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 00:08:50] CVMFS is ok
[2025-11-27 00:08:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:08:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:08:50] Further information can be found at the LHC@home message board.
[2025-11-27 00:08:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:08:50] Checking for apptainer binary...
[2025-11-27 00:08:50] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 00:08:50] apptainer is not installed, using version from CVMFS
[2025-11-27 00:08:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:08:50] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927817/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node010
[2025-11-27 00:08:50] apptainer works
[2025-11-27 00:08:50] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:08:50] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:08:50] Starting ATLAS job with PandaID=6894238247
[2025-11-27 00:08:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927817/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:40:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | mean y: 2569843.493243243
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | intersect: -83701219159.76108
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | chi2: 4.265192333653393
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | sum of square deviations: 906703512.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | sum of deviations: 46532801776.000015
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | mean x: 1764202909.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | mean y: 2568048.6153846155
[2025-11-27 02:40:29] 2025-11-27 01:39:56,801 | INFO     | intersect: -90537838126.78232
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | chi2: 4.273051931474353
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | current chi2=4.273051931474353 (change=-0.18427299887384813 %)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | right removable region: 142
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | sum of square deviations: 906703512.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | sum of deviations: 241128607.99999946
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | mean x: 1764203214.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | mean y: 2643084.5454545454
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | intersect: -466528876.95119965
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | chi2: 0.42324169668659734
[2025-11-27 02:40:29] 2025-11-27 01:39:56,802 | INFO     | current chi2=0.42324169668659734 (change=90.07684381904379 %)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | sum of square deviations: 814878534.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | sum of deviations: -12731737213.499998
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | mean x: 1764203366.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | mean y: 2664461.1231884058
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | intersect: 27566740212.89405
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | chi2: 0.05264054378509887
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | current chi2=0.05264054378509887 (change=87.56253360734489 %)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,803 | INFO     | sum of square deviations: 729472282.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | sum of deviations: -14318367313.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | mean x: 1764203519.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | mean y: 2667209.6541353385
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | intersect: 34631144018.494934
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | chi2: 0.024521723606869775
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | current chi2=0.024521723606869775 (change=53.416659776582286 %)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | sum of square deviations: 650252192.0
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | sum of deviations: -13418209741.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,804 | INFO     | mean x: 1764203671.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | mean y: 2665464.4453125
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | intersect: 36407702128.91436
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | chi2: 0.023559529616468202
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | current chi2=0.023559529616468202 (change=3.923843225000766 %)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | left removable region: 40
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | sum of square deviations: 329031285.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | sum of deviations: -7055682730.000001
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | mean x: 1764204098.5
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | mean y: 2653534.0588235296
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | intersect: 37833902228.437675
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | chi2: 0.022046190282108434
[2025-11-27 02:40:29] 2025-11-27 01:39:56,805 | INFO     | current memory leak: -21.44 B/s (using 102 data points, chi2=0.02)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | could have reported an average CPU frequency of 2759 MHz (8 samples)
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | ..............................
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . Timing measurements:
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . get job = 0 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . initial setup = 1 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . payload setup = 27 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . stage-in = 0 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . payload execution = 9014 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . stage-out = 0 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | . log creation = 0 s
[2025-11-27 02:40:29] 2025-11-27 01:39:56,806 | INFO     | ..............................
[2025-11-27 02:40:29] 2025-11-27 01:39:57,330 | INFO     | 
[2025-11-27 02:40:29] 2025-11-27 01:39:57,330 | INFO     | job summary report
[2025-11-27 02:40:29] 2025-11-27 01:39:57,330 | INFO     | --------------------------------------------------
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | PanDA job id: 6894238247
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | task id: 47523675
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | errors: (none)
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | pilot state: finished 
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | transexitcode: 0
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | exeerrorcode: 0
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | exeerrordiag: 
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | exitcode: 0
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | exitmsg: OK
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | cpuconsumptiontime: 64676 s
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | nevents: 400
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | neventsw: 0
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | pid: 18209
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | pgrp: 18209
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | corecount: 8
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | event service: False
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | sizes: {0: 2283736, 1: 2284102, 3: 2284364, 11: 2284392, 9045: 2312662, 9046: 2321874, 9048: 2322012}
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | --------------------------------------------------
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | 
[2025-11-27 02:40:29] 2025-11-27 01:39:57,331 | INFO     | executing command: ls -lF /tmp/job_10927817/atlas/pilot/slots/0
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | job 6894238247 has completed (purged errors)
[2025-11-27 02:40:29] 2025-11-27 01:39:57,341 | INFO     | overall cleanup function is called
[2025-11-27 02:40:29] 2025-11-27 01:39:58,347 | INFO     | --- collectZombieJob: --- 10, [18209]
[2025-11-27 02:40:29] 2025-11-27 01:39:58,347 | INFO     | zombie collector waiting for pid 18209
[2025-11-27 02:40:29] 2025-11-27 01:39:58,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:40:29] 2025-11-27 01:39:58,347 | INFO     | collected zombie processes
[2025-11-27 02:40:29] 2025-11-27 01:39:58,347 | INFO     | will attempt to kill all subprocesses of pid=18209
[2025-11-27 02:40:29] 2025-11-27 01:39:58,465 | INFO     | process IDs to be killed: [18209] (in reverse order)
[2025-11-27 02:40:29] 2025-11-27 01:39:58,512 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:40:29] 2025-11-27 01:39:58,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:40:29] 2025-11-27 01:39:58,517 | INFO     | did not find any defunct processes belonging to 18209
[2025-11-27 02:40:29] 2025-11-27 01:39:58,521 | INFO     | did not find any defunct processes belonging to 18209
[2025-11-27 02:40:29] 2025-11-27 01:39:58,521 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | ready for new job
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | ***************************************
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | ***************************************
[2025-11-27 02:40:29] 2025-11-27 01:39:58,522 | INFO     | 
[2025-11-27 02:40:29] 2025-11-27 01:39:58,537 | INFO     | architecture information:
[2025-11-27 02:40:29] 2025-11-27 01:39:58,537 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:40:29] 2025-11-27 01:39:58,543 | INFO     | cat /etc/os-release:
[2025-11-27 02:40:29] NAME="CentOS Linux"
[2025-11-27 02:40:29] VERSION="7 (Core)"
[2025-11-27 02:40:29] ID="centos"
[2025-11-27 02:40:29] ID_LIKE="rhel fedora"
[2025-11-27 02:40:29] VERSION_ID="7"
[2025-11-27 02:40:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:40:29] ANSI_COLOR="0;31"
[2025-11-27 02:40:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:40:29] HOME_URL="https://www.centos.org/"
[2025-11-27 02:40:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:40:29] 
[2025-11-27 02:40:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:40:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:40:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:40:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:40:29] 
[2025-11-27 02:40:29] 2025-11-27 01:39:58,543 | INFO     | ***************************************
[2025-11-27 02:40:29] 2025-11-27 01:39:59,045 | INFO     | executing command: df -mP /tmp/job_10927817/atlas/pilot/slots/0
[2025-11-27 02:40:29] 2025-11-27 01:39:59,052 | INFO     | sufficient remaining disk space (220368732160 B)
[2025-11-27 02:40:29] 2025-11-27 01:39:59,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:40:29] 2025-11-27 01:39:59,052 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:40:29] 2025-11-27 01:39:59,052 | INFO     | update_server=False
[2025-11-27 02:40:29] 2025-11-27 01:39:59,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:40:29] 2025-11-27 01:39:59,057 | WARNING  | process 18209 can no longer be monitored (due to stat problems) - aborting
[2025-11-27 02:40:29] 2025-11-27 01:39:59,152 | INFO     | using path: /tmp/job_10927817/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:40:29] 2025-11-27 01:39:59,266 | INFO     | number of running child processes to parent process 18209: 1
[2025-11-27 02:40:29] 2025-11-27 01:39:59,266 | INFO     | maximum number of monitored processes: 6
[2025-11-27 02:40:29] 2025-11-27 01:39:59,266 | INFO     | aborting job monitoring since job object (job id=6894238247) has expired
[2025-11-27 02:40:29] 2025-11-27 01:39:59,266 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:40:29] 2025-11-27 01:39:59,266 | INFO     | will abort loop
[2025-11-27 02:40:29] 2025-11-27 01:39:59,436 | INFO     | all data control threads have been joined
[2025-11-27 02:40:29] 2025-11-27 01:39:59,497 | INFO     | all job control threads have been joined
[2025-11-27 02:40:29] 2025-11-27 01:39:59,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:40:29] 2025-11-27 01:40:00,057 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:00,271 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:00,442 | INFO     | [data] control thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:00,479 | INFO     | all payload control threads have been joined
[2025-11-27 02:40:29] 2025-11-27 01:40:00,502 | INFO     | [job] control thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:00,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:40:29] 2025-11-27 01:40:00,555 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:00,723 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:40:29] 2025-11-27 01:40:00,940 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,279 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,392 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,484 | INFO     | [payload] control thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,493 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,539 | INFO     | [job] validate thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,608 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:01,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:40:29] 2025-11-27 01:40:01,991 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:02,869 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:04,534 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:40:29] 2025-11-27 01:40:10,117 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:40:29] 2025-11-27 01:40:11,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-11-27 02:40:29] 2025-11-27 01:40:16,569 | INFO     | all workflow threads have been joined
[2025-11-27 02:40:29] 2025-11-27 01:40:16,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:40:29] 2025-11-27 01:40:16,569 | INFO     | traces error code: 0
[2025-11-27 02:40:29] 2025-11-27 01:40:16,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | INFO     | PID=11433 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | INFO     | .. there are 7 such processes running
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:40:29] 2025-11-27 01:40:29,261 | INFO     | [monitor] control thread has ended
[2025-11-27 02:40:29] 2025-11-27 01:40:29,316 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:40:29] 2025-11-27 01:40:29,317 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:40:29] 2025-11-27 01:40:29,318 [wrapper] pilotpid: 11433
[2025-11-27 02:40:29] 2025-11-27 01:40:29,319 [wrapper] Pilot exit status: 0
[2025-11-27 02:40:29] 2025-11-27 01:40:29,323 [wrapper] pandaids: 6894238247
[2025-11-27 02:40:29] 2025-11-27 01:40:29,350 [wrapper] cleanup supervisor_pilot  9420 11434
[2025-11-27 02:40:29] 2025-11-27 01:40:29,351 [wrapper] Test setup, not cleaning
[2025-11-27 02:40:29] 2025-11-27 01:40:29,352 [wrapper] apfmon messages muted
[2025-11-27 02:40:29] 2025-11-27 01:40:29,353 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:40:29] 2025-11-27 01:40:29,354 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:40:29]  *** Error codes and diagnostics ***
[2025-11-27 02:40:29]     "exeErrorCode": 0,
[2025-11-27 02:40:29]     "exeErrorDiag": "",
[2025-11-27 02:40:29]     "pilotErrorCode": 0,
[2025-11-27 02:40:29]     "pilotErrorDiag": "",
[2025-11-27 02:40:29]  *** Listing of results directory ***
[2025-11-27 02:40:29] total 614696
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user    576529 Nov 24 20:02 pilot3.tar.gz
[2025-11-27 02:40:29] -rwx------ 1 mf493845 unix-user     36292 Nov 24 20:57 runpilot2-wrapper.sh
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      5112 Nov 24 20:57 queuedata.json
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       100 Nov 26 22:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:40:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 22:57 run_atlas
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       105 Nov 26 22:57 job.xml
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user 281027544 Nov 27 00:08 EVNT.47523673._000002.pool.root.1
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 00:08 start_atlas.sh
[2025-11-27 02:40:29] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 00:08 shared
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user    589935 Nov 27 00:08 input.tar.gz
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      6391 Nov 27 00:08 init_data.xml
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user         0 Nov 27 00:08 boinc_setup_complete
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      8192 Nov 27 00:08 boinc_mmap_file
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user         0 Nov 27 00:08 boinc_lockfile
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      2612 Nov 27 00:08 pandaJob.out
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user    991546 Nov 27 00:08 agis_schedconf.cvmfs.json
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user   1516240 Nov 27 00:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:40:29] drwx------ 5 mf493845 unix-user       440 Nov 27 00:08 pilot3
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user 341148874 Nov 27 02:39 HITS.47523675._000027.pool.root.1
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      1022 Nov 27 02:39 memory_monitor_summary.json
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user    374784 Nov 27 02:39 log.47523675._000027.job.log.tgz.1
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      7773 Nov 27 02:39 heartbeat.json
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       820 Nov 27 02:40 pilotlog.txt
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user        95 Nov 27 02:40 pilot_heartbeat.json
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user   1321058 Nov 27 02:40 log.47523675._000027.job.log.1
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       357 Nov 27 02:40 output.list
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       620 Nov 27 02:40 runtime_log
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user   1710080 Nov 27 02:40 result.tar.gz
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user      9220 Nov 27 02:40 runtime_log.err
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user       647 Nov 27 02:40 0NONDm3rrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmstLKDmT9iJtn.diag
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user     21647 Nov 27 02:40 stderr.txt
[2025-11-27 02:40:29] HITS file was successfully produced:
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user 341148874 Nov 27 02:39 shared/HITS.pool.root.1
[2025-11-27 02:40:29]  *** Contents of shared directory: ***
[2025-11-27 02:40:29] total 609868
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user 281027544 Nov 27 00:08 ATLAS.root_0
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 00:08 start_atlas.sh
[2025-11-27 02:40:29] -rw-r--r-- 2 mf493845 unix-user    589935 Nov 27 00:08 input.tar.gz
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user 341148874 Nov 27 02:39 HITS.pool.root.1
[2025-11-27 02:40:29] -rw------- 1 mf493845 unix-user   1710080 Nov 27 02:40 result.tar.gz
02:40:30 (7661): run_atlas exited; CPU time 64823.485871
02:40:30 (7661): called boinc_finish(0)

</stderr_txt>
]]>

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