Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:17:44 (28722): wrapper (7.7.26015): starting
01:17:44 (28722): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:17:44] Arguments: --nthreads 8
[2025-11-27 01:17:44] Threads: 8
[2025-11-27 01:17:44] Checking for CVMFS
[2025-11-27 01:17:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:17:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:17:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:17:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:17:44] 2.11.0.0 4356 66040 98008 153341 2 88 2323102 4096001 1872 130560 3 6608470 99.780 3103850 400 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:17:44] CVMFS is ok
[2025-11-27 01:17:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:17:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:17:44] Further information can be found at the LHC@home message board.
[2025-11-27 01:17:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:17:44] Checking for apptainer binary...
[2025-11-27 01:17:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:17:44] apptainer is not installed, using version from CVMFS
[2025-11-27 01:17:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:17:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927848/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node172
[2025-11-27 01:17:44] apptainer works
[2025-11-27 01:17:50] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:17:50] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:17:50] Starting ATLAS job with PandaID=6895375912
[2025-11-27 01:17:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927848/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:42:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:42:27] 2025-11-27 04:41:40,481 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 05:42:27] 2025-11-27 04:41:41,373 | INFO     | time since job start (15827s) is within the limit (172800.0s)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,861 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:42:27] 2025-11-27 04:41:42,878 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2957.877078125
[2025-11-27 05:42:27] 2025-11-27 04:41:42,883 | INFO     | using path: /tmp/job_10927848/atlas/pilot/slots/0/PanDA_Pilot-6895375912/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,884 | INFO     | extracted standard info from prmon json
[2025-11-27 05:42:27] 2025-11-27 04:41:42,884 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:42:27] 2025-11-27 04:41:42,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:42:27] 2025-11-27 04:41:42,886 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:42:27] 2025-11-27 04:41:42,887 | INFO     | sum of square deviations: 5449944045.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,887 | INFO     | sum of deviations: 119716957910.50003
[2025-11-27 05:42:27] 2025-11-27 04:41:42,888 | INFO     | mean x: 1764210591.5
[2025-11-27 05:42:27] 2025-11-27 04:41:42,888 | INFO     | mean y: 2889437.3653846155
[2025-11-27 05:42:27] 2025-11-27 04:41:42,888 | INFO     | intersect: -38750889204.01952
[2025-11-27 05:42:27] 2025-11-27 04:41:42,888 | INFO     | chi2: 3.149661613670191
[2025-11-27 05:42:27] 2025-11-27 04:41:42,888 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | sum of deviations: 170686810535.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | mean x: 1764210439.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | mean y: 2914434.945098039
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | intersect: -58564771420.404465
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | chi2: 1.4647577596970018
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | current chi2=1.4647577596970018 (change=53.494757870507534 %)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,889 | INFO     | sum of square deviations: 4844974562.5
[2025-11-27 05:42:27] 2025-11-27 04:41:42,890 | INFO     | sum of deviations: 164369336324.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,890 | INFO     | mean x: 1764210286.5
[2025-11-27 05:42:27] 2025-11-27 04:41:42,890 | INFO     | mean y: 2911186.184
[2025-11-27 05:42:27] 2025-11-27 04:41:42,890 | INFO     | intersect: -59849224297.13391
[2025-11-27 05:42:27] 2025-11-27 04:41:42,891 | INFO     | chi2: 1.4625855584440788
[2025-11-27 05:42:27] 2025-11-27 04:41:42,891 | INFO     | current chi2=1.4625855584440788 (change=0.1482976443403444 %)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,891 | INFO     | right removable region: 249
[2025-11-27 05:42:27] 2025-11-27 04:41:42,891 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | sum of deviations: 70350824993.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | mean x: 1764210744.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | mean y: 2913662.7607843135
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | intersect: -24136536346.66099
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | chi2: 1.7599767987939903
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | current chi2=1.7599767987939903 (change=44.12171799169402 %)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,892 | INFO     | sum of square deviations: 4844974562.5
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | sum of deviations: 57382621889.499985
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | mean x: 1764210896.5
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | mean y: 2920325.9
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | intersect: -20891935880.518993
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | chi2: 1.7345937342529458
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | current chi2=1.7345937342529458 (change=1.4422385885108246 %)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,893 | INFO     | left removable region: 20
[2025-11-27 05:42:27] 2025-11-27 04:41:42,894 | INFO     | sum of square deviations: 3723716330.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,894 | INFO     | sum of deviations: 82473614182.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,894 | INFO     | mean x: 1764210866.0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,894 | INFO     | mean y: 2955310.1266375547
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | intersect: -39071139868.9162
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | chi2: 0.017119097195179636
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | current memory leak: 22.15 B/s (using 229 data points, chi2=0.02)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | could have reported an average CPU frequency of 3022 MHz (12 samples)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | ..............................
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . Timing measurements:
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . get job = 0 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . initial setup = 1 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . payload setup = 2 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . stage-in = 0 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . payload execution = 15803 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . stage-out = 1 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | . log creation = 0 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,895 | INFO     | ..............................
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | 
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | job summary report
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | --------------------------------------------------
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | PanDA job id: 6895375912
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | task id: 47556137
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | errors: (none)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | pilot state: finished 
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | transexitcode: 0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | exeerrorcode: 0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | exeerrordiag: 
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | exitcode: 0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,944 | INFO     | exitmsg: OK
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | cpuconsumptiontime: 119635 s
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | nevents: 1000
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | neventsw: 0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | pid: 29994
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | pgrp: 29994
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | corecount: 8
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | event service: False
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | sizes: {0: 2284158, 1: 2284468, 2: 2284730, 11: 2284758, 15809: 2317064, 15810: 2317063, 15811: 2326271, 15813: 2326327, 15815: 2326573}
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | --------------------------------------------------
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | 
[2025-11-27 05:42:27] 2025-11-27 04:41:42,945 | INFO     | executing command: ls -lF /tmp/job_10927848/atlas/pilot/slots/0
[2025-11-27 05:42:27] 2025-11-27 04:41:42,954 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | job 6895375912 has completed (purged errors)
[2025-11-27 05:42:27] 2025-11-27 04:41:42,955 | INFO     | overall cleanup function is called
[2025-11-27 05:42:27] 2025-11-27 04:41:43,962 | INFO     | --- collectZombieJob: --- 10, [29994]
[2025-11-27 05:42:27] 2025-11-27 04:41:43,963 | INFO     | zombie collector waiting for pid 29994
[2025-11-27 05:42:27] 2025-11-27 04:41:43,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:42:27] 2025-11-27 04:41:43,963 | INFO     | collected zombie processes
[2025-11-27 05:42:27] 2025-11-27 04:41:43,963 | INFO     | will attempt to kill all subprocesses of pid=29994
[2025-11-27 05:42:27] 2025-11-27 04:41:44,083 | INFO     | process IDs to be killed: [29994] (in reverse order)
[2025-11-27 05:42:27] 2025-11-27 04:41:44,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:42:27] 2025-11-27 04:41:44,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:42:27] 2025-11-27 04:41:44,134 | INFO     | did not find any defunct processes belonging to 29994
[2025-11-27 05:42:27] 2025-11-27 04:41:44,138 | INFO     | did not find any defunct processes belonging to 29994
[2025-11-27 05:42:27] 2025-11-27 04:41:44,138 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:42:27] 2025-11-27 04:41:44,138 | INFO     | ready for new job
[2025-11-27 05:42:27] 2025-11-27 04:41:44,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:42:27] 2025-11-27 04:41:44,139 | INFO     | ***************************************
[2025-11-27 05:42:27] 2025-11-27 04:41:44,139 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:42:27] 2025-11-27 04:41:44,139 | INFO     | ***************************************
[2025-11-27 05:42:27] 2025-11-27 04:41:44,139 | INFO     | 
[2025-11-27 05:42:27] 2025-11-27 04:41:44,154 | INFO     | architecture information:
[2025-11-27 05:42:27] 2025-11-27 04:41:44,154 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:42:27] 2025-11-27 04:41:44,161 | INFO     | cat /etc/os-release:
[2025-11-27 05:42:27] NAME="CentOS Linux"
[2025-11-27 05:42:27] VERSION="7 (Core)"
[2025-11-27 05:42:27] ID="centos"
[2025-11-27 05:42:27] ID_LIKE="rhel fedora"
[2025-11-27 05:42:27] VERSION_ID="7"
[2025-11-27 05:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:42:27] ANSI_COLOR="0;31"
[2025-11-27 05:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:42:27] HOME_URL="https://www.centos.org/"
[2025-11-27 05:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:42:27] 
[2025-11-27 05:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:42:27] 
[2025-11-27 05:42:27] 2025-11-27 04:41:44,161 | INFO     | ***************************************
[2025-11-27 05:42:27] 2025-11-27 04:41:44,663 | INFO     | executing command: df -mP /tmp/job_10927848/atlas/pilot/slots/0
[2025-11-27 05:42:27] 2025-11-27 04:41:44,670 | INFO     | sufficient remaining disk space (215273701376 B)
[2025-11-27 05:42:27] 2025-11-27 04:41:44,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:42:27] 2025-11-27 04:41:44,670 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:42:27] 2025-11-27 04:41:44,670 | INFO     | update_server=False
[2025-11-27 05:42:27] 2025-11-27 04:41:44,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:42:27] 2025-11-27 04:41:44,671 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:42:27] 2025-11-27 04:41:44,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:42:27] 2025-11-27 04:41:44,671 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:42:27] 2025-11-27 04:41:44,671 | INFO     | aborting loop
[2025-11-27 05:42:27] 2025-11-27 04:41:45,353 | INFO     | all payload control threads have been joined
[2025-11-27 05:42:27] 2025-11-27 04:41:45,590 | INFO     | all data control threads have been joined
[2025-11-27 05:42:27] 2025-11-27 04:41:45,675 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:45,675 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:45,676 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:45,895 | INFO     | all job control threads have been joined
[2025-11-27 05:42:27] 2025-11-27 04:41:46,032 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,308 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,358 | INFO     | [payload] control thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:42:27] 2025-11-27 04:41:46,595 | INFO     | [data] control thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,673 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,725 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,782 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,790 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,837 | INFO     | [job] validate thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:46,901 | INFO     | [job] control thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:47,122 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:50,458 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:41:55,035 | INFO     | job.realtimelogging is not enabled
[2025-11-27 05:42:27] 2025-11-27 04:41:56,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:42:27] 2025-11-27 04:42:14,585 | INFO     | PID=13767 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:42:27] 2025-11-27 04:42:14,585 | INFO     | .. there are 8 such processes running
[2025-11-27 05:42:27] 2025-11-27 04:42:14,586 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:42:27] 2025-11-27 04:42:14,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:42:27] 2025-11-27 04:42:14,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:42:27] 2025-11-27 04:42:20,494 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:42:27] 2025-11-27 04:42:22,268 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-27 05:42:27] 2025-11-27 04:42:22,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:42:27] 2025-11-27 04:42:22,622 | INFO     | [monitor] control thread has ended
[2025-11-27 05:42:27] 2025-11-27 04:42:27,276 | INFO     | all workflow threads have been joined
[2025-11-27 05:42:27] 2025-11-27 04:42:27,276 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:42:27] 2025-11-27 04:42:27,277 | INFO     | traces error code: 0
[2025-11-27 05:42:27] 2025-11-27 04:42:27,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:42:27] 2025-11-27 04:42:27,330 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:42:27] 2025-11-27 04:42:27,331 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:42:27] 2025-11-27 04:42:27,332 [wrapper] pilotpid: 13767
[2025-11-27 05:42:27] 2025-11-27 04:42:27,333 [wrapper] Pilot exit status: 0
[2025-11-27 05:42:27] 2025-11-27 04:42:27,338 [wrapper] pandaids: 6895375912
[2025-11-27 05:42:27] 2025-11-27 04:42:27,363 [wrapper] cleanup supervisor_pilot 20014 13770
[2025-11-27 05:42:27] 2025-11-27 04:42:27,364 [wrapper] Test setup, not cleaning
[2025-11-27 05:42:27] 2025-11-27 04:42:27,365 [wrapper] apfmon messages muted
[2025-11-27 05:42:27] 2025-11-27 04:42:27,366 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:42:27] 2025-11-27 04:42:27,368 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:42:27]  *** Error codes and diagnostics ***
[2025-11-27 05:42:27]     "exeErrorCode": 0,
[2025-11-27 05:42:27]     "exeErrorDiag": "",
[2025-11-27 05:42:27]     "pilotErrorCode": 0,
[2025-11-27 05:42:27]     "pilotErrorDiag": "",
[2025-11-27 05:42:27]  *** Listing of results directory ***
[2025-11-27 05:42:27] total 1302604
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user    576529 Nov 24 01:08 pilot3.tar.gz
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      5112 Nov 24 01:21 queuedata.json
[2025-11-27 05:42:27] -rwx------ 1 mf493845 unix-user     36292 Nov 24 01:23 runpilot2-wrapper.sh
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user       100 Nov 26 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:42:27] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:33 run_atlas
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user       105 Nov 26 23:33 job.xml
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:17 start_atlas.sh
[2025-11-27 05:42:27] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:17 shared
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user    590109 Nov 27 01:17 input.tar.gz
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      6392 Nov 27 01:17 init_data.xml
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user 411229397 Nov 27 01:17 EVNT.47483658._000962.pool.root.1
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user         0 Nov 27 01:17 boinc_setup_complete
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:17 boinc_mmap_file
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user         0 Nov 27 01:17 boinc_lockfile
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      2785 Nov 27 01:17 pandaJob.out
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user    991546 Nov 27 01:17 agis_schedconf.cvmfs.json
[2025-11-27 05:42:27] drwx------ 5 mf493845 unix-user       440 Nov 27 01:17 pilot3
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user 911041119 Nov 27 05:41 HITS.47556137._009483.pool.root.1
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      1025 Nov 27 05:41 memory_monitor_summary.json
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user   1560617 Nov 27 05:41 log.47556137._009483.job.log.tgz.1
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      8603 Nov 27 05:41 heartbeat.json
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user        95 Nov 27 05:42 pilot_heartbeat.json
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      4907 Nov 27 05:42 pilotlog.txt
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user   2291914 Nov 27 05:42 log.47556137._009483.job.log.1
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user       353 Nov 27 05:42 output.list
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user       620 Nov 27 05:42 runtime_log
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:42 result.tar.gz
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:42 runtime_log.err
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user       650 Nov 27 05:42 5hjMDmvXZh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQJLKDmpkLcym.diag
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user     21777 Nov 27 05:42 stderr.txt
[2025-11-27 05:42:27] HITS file was successfully produced:
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user 911041119 Nov 27 05:41 shared/HITS.pool.root.1
[2025-11-27 05:42:27]  *** Contents of shared directory: ***
[2025-11-27 05:42:27] total 1295660
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:17 start_atlas.sh
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user    590109 Nov 27 01:17 input.tar.gz
[2025-11-27 05:42:27] -rw-r--r-- 2 mf493845 unix-user 411229397 Nov 27 01:17 ATLAS.root_0
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user 911041119 Nov 27 05:41 HITS.pool.root.1
[2025-11-27 05:42:27] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:42 result.tar.gz
05:42:28 (28722): run_atlas exited; CPU time 119844.272794
05:42:28 (28722): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN