Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
20:53:28 (2064705): wrapper (7.7.26015): starting
20:53:28 (2064705): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:53:28] Arguments: --nthreads 8
[2025-11-26 20:53:28] Threads: 8
[2025-11-26 20:53:28] Checking for CVMFS
[2025-11-26 20:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:53:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:53:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:53:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:53:29] 2.13.3.0 1999684 0 39396 153334 3 87 3345869 4096001 727 130560 0 158860 99.995 1372 1067 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-26 20:53:29] CVMFS is ok
[2025-11-26 20:53:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:53:29] Checking for apptainer binary...
[2025-11-26 20:53:29] apptainer is not installed, using version from CVMFS
[2025-11-26 20:53:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:53:29] senture-c621e-l
[2025-11-26 20:53:29] apptainer works
[2025-11-26 20:53:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:53:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:53:29] Starting ATLAS job with PandaID=6896764771
[2025-11-26 20:53:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:52:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:52:31] 2025-11-27 04:51:38,148 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 04:52:31] 2025-11-27 04:51:38,151 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-27 04:52:31] 2025-11-27 04:51:38,157 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6896764771/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,157 | INFO     | extracted standard info from prmon json
[2025-11-27 04:52:31] 2025-11-27 04:51:38,157 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 04:52:31] 2025-11-27 04:51:38,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 04:52:31] 2025-11-27 04:51:38,162 | INFO     | fitting pss+swap vs Time
[2025-11-27 04:52:31] 2025-11-27 04:51:38,162 | INFO     | sum of square deviations: 32193665858.42749
[2025-11-27 04:52:31] 2025-11-27 04:51:38,164 | INFO     | sum of deviations: 415063203657.281
[2025-11-27 04:52:31] 2025-11-27 04:51:38,165 | INFO     | mean x: 1764204744.580851
[2025-11-27 04:52:31] 2025-11-27 04:51:38,165 | INFO     | mean y: 2856446.0978723406
[2025-11-27 04:52:31] 2025-11-27 04:51:38,165 | INFO     | intersect: -22742502110.247364
[2025-11-27 04:52:31] 2025-11-27 04:51:38,165 | INFO     | chi2: 3.970273262368867
[2025-11-27 04:52:31] 2025-11-27 04:51:38,165 | INFO     | sum of square deviations: 31177109550.894627
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | sum of deviations: 519617690995.05994
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | mean x: 1764204592.0817204
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | mean y: 2872079.524731183
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | intersect: -29400492433.273094
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | chi2: 1.9721730587963209
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | current chi2=1.9721730587963209 (change=50.32651587262227 %)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,168 | INFO     | sum of square deviations: 30182181555.860977
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | sum of deviations: 509550578097.7739
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | mean x: 1764204439.5826087
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | mean y: 2870536.3217391307
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | intersect: -29781304951.729195
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | chi2: 1.969098100951822
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | current chi2=1.969098100951822 (change=0.1559172421904796 %)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,171 | INFO     | right removable region: 459
[2025-11-27 04:52:31] 2025-11-27 04:51:38,172 | INFO     | sum of square deviations: 31177086370.894627
[2025-11-27 04:52:31] 2025-11-27 04:51:38,174 | INFO     | sum of deviations: 305291207208.4148
[2025-11-27 04:52:31] 2025-11-27 04:51:38,174 | INFO     | mean x: 1764204897.0817204
[2025-11-27 04:52:31] 2025-11-27 04:51:38,174 | INFO     | mean y: 2872857.3311827956
[2025-11-27 04:52:31] 2025-11-27 04:51:38,174 | INFO     | intersect: -17272514469.942677
[2025-11-27 04:52:31] 2025-11-27 04:51:38,175 | INFO     | chi2: 2.1422467708233106
[2025-11-27 04:52:31] 2025-11-27 04:51:38,175 | INFO     | current chi2=2.1422467708233106 (change=46.04283813086615 %)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,175 | INFO     | sum of square deviations: 30182163560.024113
[2025-11-27 04:52:31] 2025-11-27 04:51:38,177 | INFO     | sum of deviations: 277637868673.44116
[2025-11-27 04:52:31] 2025-11-27 04:51:38,177 | INFO     | mean x: 1764205049.5804348
[2025-11-27 04:52:31] 2025-11-27 04:51:38,177 | INFO     | mean y: 2877092.893478261
[2025-11-27 04:52:31] 2025-11-27 04:51:38,177 | INFO     | intersect: -16225586081.866524
[2025-11-27 04:52:31] 2025-11-27 04:51:38,178 | INFO     | chi2: 2.1046089385527575
[2025-11-27 04:52:31] 2025-11-27 04:51:38,178 | INFO     | current chi2=2.1046089385527575 (change=1.7569326178089206 %)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,178 | INFO     | left removable region: 20
[2025-11-27 04:52:31] 2025-11-27 04:51:38,178 | INFO     | sum of square deviations: 26234352261.88154
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | sum of deviations: 330445763446.6129
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | mean x: 1764205019.0842824
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | mean y: 2898484.929384966
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | intersect: -22218884183.38952
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | chi2: 0.06506380204929849
[2025-11-27 04:52:31] 2025-11-27 04:51:38,180 | INFO     | current memory leak: 12.60 B/s (using 439 data points, chi2=0.07)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | ..............................
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . Timing measurements:
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . get job = 0 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . initial setup = 1 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . payload setup = 4 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . stage-in = 0 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . payload execution = 28650 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . stage-out = 1 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | . log creation = 0 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,181 | INFO     | ..............................
[2025-11-27 04:52:31] 2025-11-27 04:51:38,419 | INFO     | 
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | job summary report
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | --------------------------------------------------
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | PanDA job id: 6896764771
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | task id: 47556185
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | errors: (none)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | pilot state: finished 
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | transexitcode: 0
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | exeerrorcode: 0
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | exeerrordiag: 
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | exitcode: 0
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | exitmsg: OK
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | cpuconsumptiontime: 224436 s
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | nevents: 1000
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | neventsw: 0
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | pid: 2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | pgrp: 2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | corecount: 8
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | event service: False
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | sizes: {0: 2284313, 3: 2284575, 11: 2284603, 28659: 2322369, 28662: 2331433, 28666: 2331623}
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | --------------------------------------------------
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | 
[2025-11-27 04:52:31] 2025-11-27 04:51:38,420 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,438 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | job 6896764771 has completed (purged errors)
[2025-11-27 04:52:31] 2025-11-27 04:51:38,439 | INFO     | overall cleanup function is called
[2025-11-27 04:52:31] 2025-11-27 04:51:39,452 | INFO     | --- collectZombieJob: --- 10, [2132481]
[2025-11-27 04:52:31] 2025-11-27 04:51:39,452 | INFO     | zombie collector waiting for pid 2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:39,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:52:31] 2025-11-27 04:51:39,452 | INFO     | collected zombie processes
[2025-11-27 04:52:31] 2025-11-27 04:51:39,452 | INFO     | will attempt to kill all subprocesses of pid=2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:39,592 | INFO     | process IDs to be killed: [2132481] (in reverse order)
[2025-11-27 04:52:31] 2025-11-27 04:51:39,659 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:52:31] 2025-11-27 04:51:39,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:52:31] 2025-11-27 04:51:39,664 | INFO     | did not find any defunct processes belonging to 2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:39,668 | INFO     | did not find any defunct processes belonging to 2132481
[2025-11-27 04:52:31] 2025-11-27 04:51:39,668 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:52:31] 2025-11-27 04:51:39,668 | INFO     | ready for new job
[2025-11-27 04:52:31] 2025-11-27 04:51:39,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:52:31] 2025-11-27 04:51:39,671 | INFO     | ***************************************
[2025-11-27 04:52:31] 2025-11-27 04:51:39,671 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:52:31] 2025-11-27 04:51:39,671 | INFO     | ***************************************
[2025-11-27 04:52:31] 2025-11-27 04:51:39,671 | INFO     | 
[2025-11-27 04:52:31] 2025-11-27 04:51:39,673 | INFO     | pilot is running in a VM
[2025-11-27 04:52:31] 2025-11-27 04:51:39,673 | INFO     | architecture information:
[2025-11-27 04:52:31] 2025-11-27 04:51:39,673 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:52:31] 2025-11-27 04:51:39,685 | INFO     | cat /etc/os-release:
[2025-11-27 04:52:31] NAME="CentOS Linux"
[2025-11-27 04:52:31] VERSION="7 (Core)"
[2025-11-27 04:52:31] ID="centos"
[2025-11-27 04:52:31] ID_LIKE="rhel fedora"
[2025-11-27 04:52:31] VERSION_ID="7"
[2025-11-27 04:52:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:52:31] ANSI_COLOR="0;31"
[2025-11-27 04:52:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:52:31] HOME_URL="https://www.centos.org/"
[2025-11-27 04:52:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:52:31] 
[2025-11-27 04:52:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:52:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:52:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:52:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:52:31] 
[2025-11-27 04:52:31] 2025-11-27 04:51:39,686 | INFO     | ***************************************
[2025-11-27 04:52:31] 2025-11-27 04:51:40,189 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-11-27 04:52:31] 2025-11-27 04:51:40,203 | INFO     | sufficient remaining disk space (104204337152 B)
[2025-11-27 04:52:31] 2025-11-27 04:51:40,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | INFO     | update_server=False
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:52:31] 2025-11-27 04:51:40,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:52:31] 2025-11-27 04:51:40,427 | INFO     | all job control threads have been joined
[2025-11-27 04:52:31] 2025-11-27 04:51:40,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 04:52:31] 2025-11-27 04:51:40,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 04:52:31] 2025-11-27 04:51:40,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:52:31] 2025-11-27 04:51:40,585 | INFO     | will abort loop
[2025-11-27 04:52:31] 2025-11-27 04:51:41,118 | INFO     | all data control threads have been joined
[2025-11-27 04:52:31] 2025-11-27 04:51:41,209 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,210 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,337 | INFO     | all payload control threads have been joined
[2025-11-27 04:52:31] 2025-11-27 04:51:41,340 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,390 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,432 | INFO     | [job] control thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,590 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:41,835 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,123 | INFO     | [data] control thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,210 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,298 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,343 | INFO     | [payload] control thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,446 | INFO     | [job] validate thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,524 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:42,540 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:51:44,211 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:52:31] 2025-11-27 04:52:10,243 | INFO     | PID=2087956 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:52:31] 2025-11-27 04:52:10,243 | INFO     | .. there are 8 such processes running
[2025-11-27 04:52:31] 2025-11-27 04:52:10,244 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:52:31] 2025-11-27 04:52:10,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:52:31] 2025-11-27 04:52:10,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:52:31] 2025-11-27 04:52:24,892 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:52:31] 2025-11-27 04:52:25,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126820107482944)>', '<ExcThread(monitor, started 126819537757952)>']
[2025-11-27 04:52:31] 2025-11-27 04:52:26,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:52:31] 2025-11-27 04:52:26,326 | INFO     | [monitor] control thread has ended
[2025-11-27 04:52:31] 2025-11-27 04:52:30,963 | INFO     | all workflow threads have been joined
[2025-11-27 04:52:31] 2025-11-27 04:52:30,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:52:31] 2025-11-27 04:52:30,964 | INFO     | traces error code: 0
[2025-11-27 04:52:31] 2025-11-27 04:52:30,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:52:31] 2025-11-27 04:52:31,057 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:52:31] 2025-11-27 04:52:31,060 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:52:31] 2025-11-27 04:52:31,062 [wrapper] pilotpid: 2087956
[2025-11-27 04:52:31] 2025-11-27 04:52:31,064 [wrapper] Pilot exit status: 0
[2025-11-27 04:52:31] 2025-11-27 04:52:31,072 [wrapper] pandaids: 6896764771
[2025-11-27 04:52:31] 2025-11-27 04:52:31,111 [wrapper] cleanup supervisor_pilot 2434322 2087958
[2025-11-27 04:52:31] 2025-11-27 04:52:31,113 [wrapper] Test setup, not cleaning
[2025-11-27 04:52:31] 2025-11-27 04:52:31,116 [wrapper] apfmon messages muted
[2025-11-27 04:52:31] 2025-11-27 04:52:31,118 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:52:31] 2025-11-27 04:52:31,120 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:52:31]  *** Error codes and diagnostics ***
[2025-11-27 04:52:31]     "exeErrorCode": 0,
[2025-11-27 04:52:31]     "exeErrorDiag": "",
[2025-11-27 04:52:31]     "pilotErrorCode": 0,
[2025-11-27 04:52:31]     "pilotErrorDiag": "",
[2025-11-27 04:52:31]  *** Listing of results directory ***
[2025-11-27 04:52:31] total 1321120
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc    576529 Nov 25 08:55 pilot3.tar.gz
[2025-11-27 04:52:31] -rwx------ 1 boinc boinc     36292 Nov 25 08:56 runpilot2-wrapper.sh
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc      5112 Nov 25 08:56 queuedata.json
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc       100 Nov 26 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:52:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 20:53 run_atlas
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc       105 Nov 26 20:53 job.xml
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc 411117176 Nov 26 20:53 EVNT.47483658._004259.pool.root.1
[2025-11-27 04:52:31] drwxrwx--x 2 boinc boinc      4096 Nov 26 20:53 shared
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc    590100 Nov 26 20:53 input.tar.gz
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 20:53 start_atlas.sh
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:53 boinc_setup_complete
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc      6662 Nov 26 20:53 init_data.xml
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:53 boinc_lockfile
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc      2781 Nov 26 20:53 pandaJob.out
[2025-11-27 04:52:31] -rw------- 1 boinc boinc        50 Nov 26 20:53 setup.sh.local
[2025-11-27 04:52:31] -rw------- 1 boinc boinc    991538 Nov 26 20:53 agis_schedconf.cvmfs.json
[2025-11-27 04:52:31] drwx------ 5 boinc boinc      4096 Nov 26 20:53 pilot3
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc       532 Nov 27 04:46 boinc_task_state.xml
[2025-11-27 04:52:31] -rw------- 1 boinc boinc 926250865 Nov 27 04:51 HITS.47556185._000221.pool.root.1
[2025-11-27 04:52:31] -rw------- 1 boinc boinc      1031 Nov 27 04:51 memory_monitor_summary.json
[2025-11-27 04:52:31] -rw------- 1 boinc boinc   1516240 Nov 27 04:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:52:31] -rw------- 1 boinc boinc   1748825 Nov 27 04:51 log.47556185._000221.job.log.tgz.1
[2025-11-27 04:52:31] -rw------- 1 boinc boinc      8586 Nov 27 04:51 heartbeat.json
[2025-11-27 04:52:31] -rw------- 1 boinc boinc        95 Nov 27 04:52 pilot_heartbeat.json
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc      8192 Nov 27 04:52 boinc_mmap_file
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc        29 Nov 27 04:52 wrapper_checkpoint.txt
[2025-11-27 04:52:31] -rw------- 1 boinc boinc      5079 Nov 27 04:52 pilotlog.txt
[2025-11-27 04:52:31] -rw------- 1 boinc boinc   4019300 Nov 27 04:52 log.47556185._000221.job.log.1
[2025-11-27 04:52:31] -rw------- 1 boinc boinc       353 Nov 27 04:52 output.list
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc       620 Nov 27 04:52 runtime_log
[2025-11-27 04:52:31] -rw------- 1 boinc boinc   5785600 Nov 27 04:52 result.tar.gz
[2025-11-27 04:52:31] -rw------- 1 boinc boinc       657 Nov 27 04:52 ZL4KDmE23h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOHMKDmoV70xm.diag
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc      9425 Nov 27 04:52 runtime_log.err
[2025-11-27 04:52:31] -rw-r--r-- 1 boinc boinc     20976 Nov 27 04:52 stderr.txt
[2025-11-27 04:52:31] HITS file was successfully produced:
[2025-11-27 04:52:31] -rw------- 1 boinc boinc 926250865 Nov 27 04:51 shared/HITS.pool.root.1
[2025-11-27 04:52:31]  *** Contents of shared directory: ***
[2025-11-27 04:52:31] total 1312284
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc 411117176 Nov 26 20:53 ATLAS.root_0
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc    590100 Nov 26 20:53 input.tar.gz
[2025-11-27 04:52:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 20:53 start_atlas.sh
[2025-11-27 04:52:31] -rw------- 1 boinc boinc 926250865 Nov 27 04:51 HITS.pool.root.1
[2025-11-27 04:52:31] -rw------- 1 boinc boinc   5785600 Nov 27 04:52 result.tar.gz
04:52:33 (2064705): run_atlas exited; CPU time 224960.706092
04:52:33 (2064705): called boinc_finish(0)

</stderr_txt>
]]>

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