Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:54:51 (1211738): wrapper (7.7.26015): starting
19:54:51 (1211738): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 19:54:51] Arguments: --nthreads 10
[2025-11-26 19:54:51] Threads: 10
[2025-11-26 19:54:51] Checking for CVMFS
[2025-11-26 19:54:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:54:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:54:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:54:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:54:52] 2.13.3.0 42195 30656 336508 153341 2 302 25119000 32935936 28003 16776704 0 179270724 99.778 106271961 33069 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:54:52] CVMFS is ok
[2025-11-26 19:54:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:54:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:54:52] Further information can be found at the LHC@home message board.
[2025-11-26 19:54:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:54:52] Checking for apptainer binary...
[2025-11-26 19:54:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:54:52] Running /usr/bin/apptainer --version
[2025-11-26 19:54:52] apptainer version 1.4.4-1.el9
[2025-11-26 19:54:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:54:52] c-6-3.aglt2.org
[2025-11-26 19:54:52] apptainer works
[2025-11-26 19:54:52] Set ATHENA_PROC_NUMBER=10
[2025-11-26 19:54:52] Set ATHENA_CORE_NUMBER=10
[2025-11-26 19:54:52] Starting ATLAS job with PandaID=6896764156
[2025-11-26 19:54:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:10:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:10:18] 2025-11-28 03:08:59,286 | INFO     | monitor loop #5426: job 0:6896764156 is in state 'finished'
[2025-11-27 22:10:18] 2025-11-28 03:08:59,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:10:18] 2025-11-28 03:09:00,320 | INFO     | time since job start (94419s) is within the limit (172800.0s)
[2025-11-27 22:10:18] 2025-11-28 03:09:01,792 | INFO     | monitor loop #5427: job 0:6896764156 is in state 'finished'
[2025-11-27 22:10:18] 2025-11-28 03:09:01,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:10:18] 2025-11-28 03:09:02,327 | INFO     | time since job start (94421s) is within the limit (172800.0s)
[2025-11-27 22:10:18] 2025-11-28 03:09:04,323 | INFO     | monitor loop #5428: job 0:6896764156 is in state 'finished'
[2025-11-27 22:10:18] 2025-11-28 03:09:04,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:10:18] 2025-11-28 03:09:05,470 | INFO     | PID=1215567 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:10:18] 2025-11-28 03:09:05,470 | INFO     | .. there are 43 such processes running
[2025-11-27 22:10:18] 2025-11-28 03:09:06,471 | INFO     | time since job start (94425s) is within the limit (172800.0s)
[2025-11-27 22:10:18] 2025-11-28 03:09:06,839 | INFO     | monitor loop #5429: job 0:6896764156 is in state 'finished'
[2025-11-27 22:10:18] 2025-11-28 03:09:06,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:10:18] 2025-11-28 03:09:08,483 | INFO     | time since job start (94427s) is within the limit (172800.0s)
[2025-11-27 22:10:18] 2025-11-28 03:09:09,344 | INFO     | monitor loop #5430: job 0:6896764156 is in state 'finished'
[2025-11-27 22:10:18] 2025-11-28 03:09:09,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,150 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:10:18] 2025-11-28 03:09:10,157 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.211100000001
[2025-11-27 22:10:18] 2025-11-28 03:09:10,164 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896764156/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,165 | INFO     | extracted standard info from prmon json
[2025-11-27 22:10:18] 2025-11-28 03:09:10,165 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:10:18] 2025-11-28 03:09:10,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:10:18] 2025-11-28 03:09:10,199 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:10:18] 2025-11-28 03:09:10,202 | INFO     | sum of square deviations: 1148011788484.5378
[2025-11-27 22:10:18] 2025-11-28 03:09:10,265 | INFO     | sum of deviations: 4687035305419.019
[2025-11-27 22:10:18] 2025-11-28 03:09:10,265 | INFO     | mean x: 1764252138.1092436
[2025-11-27 22:10:18] 2025-11-28 03:09:10,265 | INFO     | mean y: 3273645.3135100193
[2025-11-27 22:10:18] 2025-11-28 03:09:10,265 | INFO     | intersect: -7199711674.109793
[2025-11-27 22:10:18] 2025-11-28 03:09:10,267 | INFO     | chi2: 13.272537895515994
[2025-11-27 22:10:18] 2025-11-28 03:09:10,269 | INFO     | sum of square deviations: 1136916838705.8655
[2025-11-27 22:10:18] 2025-11-28 03:09:10,327 | INFO     | sum of deviations: 5276075903404.135
[2025-11-27 22:10:18] 2025-11-28 03:09:10,327 | INFO     | mean x: 1764251985.6128404
[2025-11-27 22:10:18] 2025-11-28 03:09:10,327 | INFO     | mean y: 3281740.427367056
[2025-11-27 22:10:18] 2025-11-28 03:09:10,327 | INFO     | intersect: -8184060615.606631
[2025-11-27 22:10:18] 2025-11-28 03:09:10,330 | INFO     | chi2: 10.08442525657304
[2025-11-27 22:10:18] 2025-11-28 03:09:10,330 | INFO     | current chi2=10.08442525657304 (change=24.020369457901708 %)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,331 | INFO     | right removable region: 1541
[2025-11-27 22:10:18] 2025-11-28 03:09:10,332 | INFO     | sum of square deviations: 1136915791945.8655
[2025-11-27 22:10:18] 2025-11-28 03:09:10,389 | INFO     | sum of deviations: 4062738076129.945
[2025-11-27 22:10:18] 2025-11-28 03:09:10,390 | INFO     | mean x: 1764252290.6128404
[2025-11-27 22:10:18] 2025-11-28 03:09:10,390 | INFO     | mean y: 3282223.0836575874
[2025-11-27 22:10:18] 2025-11-28 03:09:10,390 | INFO     | intersect: -6301225997.973361
[2025-11-27 22:10:18] 2025-11-28 03:09:10,392 | INFO     | chi2: 10.042209496395078
[2025-11-27 22:10:18] 2025-11-28 03:09:10,393 | INFO     | current chi2=10.042209496395078 (change=24.338437942695595 %)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,393 | INFO     | left removable region: 10
[2025-11-27 22:10:18] 2025-11-28 03:09:10,395 | INFO     | sum of square deviations: 1112758271358.3672
[2025-11-27 22:10:18] 2025-11-28 03:09:10,509 | INFO     | time since job start (94429s) is within the limit (172800.0s)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,532 | INFO     | sum of deviations: 4590282952454.921
[2025-11-27 22:10:18] 2025-11-28 03:09:10,537 | INFO     | mean x: 1764252260.1188765
[2025-11-27 22:10:18] 2025-11-28 03:09:10,537 | INFO     | mean y: 3295100.8576094056
[2025-11-27 22:10:18] 2025-11-28 03:09:10,537 | INFO     | intersect: -7274491352.769769
[2025-11-27 22:10:18] 2025-11-28 03:09:10,539 | INFO     | chi2: 5.670537779537154
[2025-11-27 22:10:18] 2025-11-28 03:09:10,540 | INFO     | current memory leak: 4.13 B/s (using 1531 data points, chi2=5.67)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,541 | INFO     | could have reported an average CPU frequency of 2600 MHz (55 samples)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,541 | INFO     | ..............................
[2025-11-27 22:10:18] 2025-11-28 03:09:10,541 | INFO     | . Timing measurements:
[2025-11-27 22:10:18] 2025-11-28 03:09:10,541 | INFO     | . get job = 0 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,541 | INFO     | . initial setup = 2 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | . payload setup = 15 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | . stage-in = 0 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | . payload execution = 94338 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | . stage-out = 14 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | . log creation = 2 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,546 | INFO     | ..............................
[2025-11-27 22:10:18] 2025-11-28 03:09:10,777 | INFO     | 
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | job summary report
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | --------------------------------------------------
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | PanDA job id: 6896764156
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | task id: 47556185
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | errors: (none)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | pilot state: finished 
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | transexitcode: 0
[2025-11-27 22:10:18] 2025-11-28 03:09:10,778 | INFO     | exeerrorcode: 0
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | exeerrordiag: 
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | exitcode: 0
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | exitmsg: OK
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | cpuconsumptiontime: 304959 s
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | nevents: 1000
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | neventsw: 0
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | pid: 1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | pgrp: 1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | corecount: 10
[2025-11-27 22:10:18] 2025-11-28 03:09:10,779 | INFO     | event service: False
[2025-11-27 22:10:18] 2025-11-28 03:09:10,780 | INFO     | sizes: {0: 2283484, 1: 2284340, 12: 2284340, 13: 2284630, 22: 2284686, 94359: 2351606, 94375: 2360600, 94379: 2360656, 94399: 2360902}
[2025-11-27 22:10:18] 2025-11-28 03:09:10,780 | INFO     | --------------------------------------------------
[2025-11-27 22:10:18] 2025-11-28 03:09:10,780 | INFO     | 
[2025-11-27 22:10:18] 2025-11-28 03:09:10,780 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 22:10:18] 2025-11-28 03:09:10,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:10:18] 2025-11-28 03:09:10,846 | INFO     | job 6896764156 has completed (purged errors)
[2025-11-27 22:10:18] 2025-11-28 03:09:10,846 | INFO     | overall cleanup function is called
[2025-11-27 22:10:18] 2025-11-28 03:09:11,883 | INFO     | --- collectZombieJob: --- 10, [1222587]
[2025-11-27 22:10:18] 2025-11-28 03:09:11,883 | INFO     | zombie collector waiting for pid 1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:11,883 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:10:18] 2025-11-28 03:09:11,883 | INFO     | collected zombie processes
[2025-11-27 22:10:18] 2025-11-28 03:09:11,883 | INFO     | will attempt to kill all subprocesses of pid=1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:13,139 | INFO     | process IDs to be killed: [1222587] (in reverse order)
[2025-11-27 22:10:18] 2025-11-28 03:09:13,839 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:10:18] 2025-11-28 03:09:13,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:10:18] 2025-11-28 03:09:13,908 | INFO     | did not find any defunct processes belonging to 1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:13,983 | INFO     | did not find any defunct processes belonging to 1222587
[2025-11-27 22:10:18] 2025-11-28 03:09:13,991 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:10:18] 2025-11-28 03:09:13,991 | INFO     | ready for new job
[2025-11-27 22:10:18] 2025-11-28 03:09:13,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:10:18] 2025-11-28 03:09:14,019 | INFO     | ***************************************
[2025-11-27 22:10:18] 2025-11-28 03:09:14,019 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:10:18] 2025-11-28 03:09:14,019 | INFO     | ***************************************
[2025-11-27 22:10:18] 2025-11-28 03:09:14,019 | INFO     | 
[2025-11-27 22:10:18] 2025-11-28 03:09:14,045 | INFO     | architecture information:
[2025-11-27 22:10:18] 2025-11-28 03:09:14,050 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:10:18] 2025-11-28 03:09:14,178 | INFO     | cat /etc/os-release:
[2025-11-27 22:10:18] NAME="CentOS Linux"
[2025-11-27 22:10:18] VERSION="7 (Core)"
[2025-11-27 22:10:18] ID="centos"
[2025-11-27 22:10:18] ID_LIKE="rhel fedora"
[2025-11-27 22:10:18] VERSION_ID="7"
[2025-11-27 22:10:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:10:18] ANSI_COLOR="0;31"
[2025-11-27 22:10:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:10:18] HOME_URL="https://www.centos.org/"
[2025-11-27 22:10:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:10:18] 
[2025-11-27 22:10:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:10:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:10:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:10:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:10:18] 
[2025-11-27 22:10:18] 2025-11-28 03:09:14,178 | INFO     | ***************************************
[2025-11-27 22:10:18] 2025-11-28 03:09:14,682 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 22:10:18] 2025-11-28 03:09:14,849 | INFO     | sufficient remaining disk space (71989985280 B)
[2025-11-27 22:10:18] 2025-11-28 03:09:14,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:10:18] 2025-11-28 03:09:14,850 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:10:18] 2025-11-28 03:09:14,850 | INFO     | update_server=False
[2025-11-27 22:10:18] 2025-11-28 03:09:14,850 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:10:18] 2025-11-28 03:09:15,232 | INFO     | all payload control threads have been joined
[2025-11-27 22:10:18] 2025-11-28 03:09:15,334 | INFO     | all data control threads have been joined
[2025-11-27 22:10:18] 2025-11-28 03:09:15,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:10:18] 2025-11-28 03:09:15,385 | INFO     | aborting loop
[2025-11-27 22:10:18] 2025-11-28 03:09:15,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:10:18] 2025-11-28 03:09:15,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:10:18] 2025-11-28 03:09:15,856 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:15,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:10:18] 2025-11-28 03:09:15,923 | INFO     | all job control threads have been joined
[2025-11-27 22:10:18] 2025-11-28 03:09:16,237 | INFO     | [payload] control thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,341 | INFO     | [data] control thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,396 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,632 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,673 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,696 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,777 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,802 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:16,929 | INFO     | [job] control thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:17,010 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:17,303 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:17,309 | INFO     | [job] validate thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:17,902 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:19,601 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:10:18] 2025-11-28 03:09:46,500 | INFO     | PID=1215567 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:10:18] 2025-11-28 03:09:46,500 | INFO     | .. there are 43 such processes running
[2025-11-27 22:10:18] 2025-11-28 03:09:46,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:10:18] 2025-11-28 03:09:46,504 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:10:18] 2025-11-28 03:09:46,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:10:18] 2025-11-28 03:10:11,050 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:10:18] 2025-11-28 03:10:11,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985184675648)>', '<ExcThread(monitor, started 139984384288512)>']
[2025-11-27 22:10:18] 2025-11-28 03:10:11,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:10:18] 2025-11-28 03:10:11,742 | INFO     | [monitor] control thread has ended
[2025-11-27 22:10:18] 2025-11-28 03:10:16,255 | INFO     | all workflow threads have been joined
[2025-11-27 22:10:18] 2025-11-28 03:10:16,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:10:18] 2025-11-28 03:10:16,255 | INFO     | traces error code: 0
[2025-11-27 22:10:18] 2025-11-28 03:10:16,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:10:18] 2025-11-28 03:10:17,154 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:10:18] 2025-11-28 03:10:17,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:10:18] 2025-11-28 03:10:17,226 [wrapper] pilotpid: 1215567
[2025-11-27 22:10:18] 2025-11-28 03:10:17,260 [wrapper] Pilot exit status: 0
[2025-11-27 22:10:18] 2025-11-28 03:10:17,434 [wrapper] pandaids: 6896764156
[2025-11-27 22:10:18] 2025-11-28 03:10:17,742 [wrapper] cleanup supervisor_pilot 1948587 1215568
[2025-11-27 22:10:18] 2025-11-28 03:10:17,754 [wrapper] Test setup, not cleaning
[2025-11-27 22:10:18] 2025-11-28 03:10:17,776 [wrapper] apfmon messages muted
[2025-11-27 22:10:18] 2025-11-28 03:10:17,831 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:10:18] 2025-11-28 03:10:17,834 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:10:18]  *** Error codes and diagnostics ***
[2025-11-27 22:10:18]     "exeErrorCode": 0,
[2025-11-27 22:10:18]     "exeErrorDiag": "",
[2025-11-27 22:10:18]     "pilotErrorCode": 0,
[2025-11-27 22:10:18]     "pilotErrorDiag": "",
[2025-11-27 22:10:18]  *** Listing of results directory ***
[2025-11-27 22:10:18] total 1338212
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:00 pilot3.tar.gz
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 03:32 queuedata.json
[2025-11-27 22:10:18] -rwx------. 1 boincer umatlas     36292 Nov 25 03:35 runpilot2-wrapper.sh
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:10:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:54 run_atlas
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:54 job.xml
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas 409754507 Nov 26 19:54 EVNT.47483658._004249.pool.root.1
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:54 start_atlas.sh
[2025-11-27 22:10:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:54 shared
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:54 input.tar.gz
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:54 boinc_lockfile
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 19:54 pandaJob.out
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas        57 Nov 26 19:54 setup.sh.local
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas    991546 Nov 26 19:55 agis_schedconf.cvmfs.json
[2025-11-27 22:10:18] drwx------. 5 boincer umatlas      4096 Nov 26 19:55 pilot3
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:33 boinc_task_state.xml
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas      6657 Nov 27 22:00 init_data.xml
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas 928002991 Nov 27 22:07 HITS.47556185._000130.pool.root.1
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas      1080 Nov 27 22:08 memory_monitor_summary.json
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas   2744249 Nov 27 22:08 log.47556185._000130.job.log.tgz.1
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas      7977 Nov 27 22:09 heartbeat.json
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas        95 Nov 27 22:09 pilot_heartbeat.json
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas      4824 Nov 27 22:10 pilotlog.txt
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:10 wrapper_checkpoint.txt
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas  11580368 Nov 27 22:10 log.47556185._000130.job.log.1
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:10 boinc_mmap_file
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas       353 Nov 27 22:10 output.list
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:10 runtime_log
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas  14346240 Nov 27 22:10 result.tar.gz
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas      9330 Nov 27 22:10 runtime_log.err
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas       661 Nov 27 22:10 IXlMDmQh3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3FMKDmYlMrpm.diag
[2025-11-27 22:10:18] -rw-r--r--. 1 boincer umatlas     21867 Nov 27 22:10 stderr.txt
[2025-11-27 22:10:18] HITS file was successfully produced:
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas 928002991 Nov 27 22:07 shared/HITS.pool.root.1
[2025-11-27 22:10:18]  *** Contents of shared directory: ***
[2025-11-27 22:10:18] total 1321024
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas 409754507 Nov 26 19:54 ATLAS.root_0
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:54 start_atlas.sh
[2025-11-27 22:10:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:54 input.tar.gz
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas 928002991 Nov 27 22:07 HITS.pool.root.1
[2025-11-27 22:10:18] -rw-------. 1 boincer umatlas  14346240 Nov 27 22:10 result.tar.gz
22:10:19 (1211738): run_atlas exited; CPU time 308395.381476
22:10:19 (1211738): called boinc_finish(0)

</stderr_txt>
]]>

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