Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:18:32 (1622037): wrapper (7.7.26015): starting
20:18:32 (1622037): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 20:18:32] Arguments: --nthreads 11
[2025-11-26 20:18:32] Threads: 11
[2025-11-26 20:18:32] Checking for CVMFS
[2025-11-26 20:18:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:18:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:18:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:18:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:18:33] 2.13.3.0 11160 30820 331776 153342 3 107 21430774 32935937 29548 16776704 0 114026992 99.388 178286471 41018 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 20:18:33] CVMFS is ok
[2025-11-26 20:18:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:18:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:18:33] Further information can be found at the LHC@home message board.
[2025-11-26 20:18:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:18:33] Checking for apptainer binary...
[2025-11-26 20:18:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:18:33] Running /usr/bin/apptainer --version
[2025-11-26 20:18:33] apptainer version 1.4.4-1.el9
[2025-11-26 20:18:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:18:33] c6-2-29-2.aglt2.org
[2025-11-26 20:18:33] apptainer works
[2025-11-26 20:18:33] Set ATHENA_PROC_NUMBER=11
[2025-11-26 20:18:33] Set ATHENA_CORE_NUMBER=11
[2025-11-26 20:18:33] Starting ATLAS job with PandaID=6891590332
[2025-11-26 20:18:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:55:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:55:29] 2025-11-27 15:54:24,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:55:29] 2025-11-27 15:54:24,221 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:55:29] 2025-11-27 15:54:24,226 | INFO     | sum of square deviations: 197937892270.2391
[2025-11-27 10:55:29] 2025-11-27 15:54:24,250 | INFO     | sum of deviations: 1288025915093.7056
[2025-11-27 10:55:29] 2025-11-27 15:54:24,250 | INFO     | mean x: 1764232581.6562138
[2025-11-27 10:55:29] 2025-11-27 15:54:24,250 | INFO     | mean y: 3363791.5969802556
[2025-11-27 10:55:29] 2025-11-27 15:54:24,250 | INFO     | intersect: -11476890238.406843
[2025-11-27 10:55:29] 2025-11-27 15:54:24,251 | INFO     | chi2: 12.565870676751812
[2025-11-27 10:55:29] 2025-11-27 15:54:24,252 | INFO     | sum of square deviations: 194510979513.56998
[2025-11-27 10:55:29] 2025-11-27 15:54:24,260 | INFO     | time since job start (52541s) is within the limit (172800.0s)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,265 | INFO     | sum of deviations: 1650456818594.7717
[2025-11-27 10:55:29] 2025-11-27 15:54:24,265 | INFO     | mean x: 1764232429.182243
[2025-11-27 10:55:29] 2025-11-27 15:54:24,265 | INFO     | mean y: 3379911.629672897
[2025-11-27 10:55:29] 2025-11-27 15:54:24,265 | INFO     | intersect: -14966414850.658855
[2025-11-27 10:55:29] 2025-11-27 15:54:24,266 | INFO     | chi2: 8.754986285313711
[2025-11-27 10:55:29] 2025-11-27 15:54:24,266 | INFO     | current chi2=8.754986285313711 (change=30.327260955252704 %)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,267 | INFO     | sum of square deviations: 191123933663.30893
[2025-11-27 10:55:29] 2025-11-27 15:54:24,283 | INFO     | sum of deviations: 2035959085805.1519
[2025-11-27 10:55:29] 2025-11-27 15:54:24,283 | INFO     | mean x: 1764232276.7097533
[2025-11-27 10:55:29] 2025-11-27 15:54:24,283 | INFO     | mean y: 3397266.1139835487
[2025-11-27 10:55:29] 2025-11-27 15:54:24,283 | INFO     | intersect: -18790192131.04422
[2025-11-27 10:55:29] 2025-11-27 15:54:24,284 | INFO     | chi2: 4.667836601746434
[2025-11-27 10:55:29] 2025-11-27 15:54:24,285 | INFO     | current chi2=4.667836601746434 (change=46.68367888163773 %)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,285 | INFO     | sum of square deviations: 187776107355.51294
[2025-11-27 10:55:29] 2025-11-27 15:54:24,467 | INFO     | sum of deviations: 2275537791981.02
[2025-11-27 10:55:29] 2025-11-27 15:54:24,472 | INFO     | mean x: 1764232124.2293143
[2025-11-27 10:55:29] 2025-11-27 15:54:24,472 | INFO     | mean y: 3408167.5153664304
[2025-11-27 10:55:29] 2025-11-27 15:54:24,472 | INFO     | intersect: -21376185482.86336
[2025-11-27 10:55:29] 2025-11-27 15:54:24,473 | INFO     | chi2: 2.7698803969639574
[2025-11-27 10:55:29] 2025-11-27 15:54:24,473 | INFO     | current chi2=2.7698803969639574 (change=40.66029655091979 %)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,474 | INFO     | sum of square deviations: 184467371770.52338
[2025-11-27 10:55:29] 2025-11-27 15:54:24,513 | INFO     | sum of deviations: 2402865806382.483
[2025-11-27 10:55:29] 2025-11-27 15:54:24,513 | INFO     | mean x: 1764231971.7431629
[2025-11-27 10:55:29] 2025-11-27 15:54:24,513 | INFO     | mean y: 3414029.127229489
[2025-11-27 10:55:29] 2025-11-27 15:54:24,513 | INFO     | intersect: -22977412546.002575
[2025-11-27 10:55:29] 2025-11-27 15:54:24,514 | INFO     | chi2: 2.115378088657358
[2025-11-27 10:55:29] 2025-11-27 15:54:24,514 | INFO     | current chi2=2.115378088657358 (change=23.629262441222867 %)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,514 | INFO     | right removable region: 840
[2025-11-27 10:55:29] 2025-11-27 15:54:24,515 | INFO     | sum of square deviations: 194508691228.9333
[2025-11-27 10:55:29] 2025-11-27 15:54:24,539 | INFO     | sum of deviations: 1039903360204.1782
[2025-11-27 10:55:29] 2025-11-27 15:54:24,539 | INFO     | mean x: 1764232734.1810749
[2025-11-27 10:55:29] 2025-11-27 15:54:24,539 | INFO     | mean y: 3374808.566588785
[2025-11-27 10:55:29] 2025-11-27 15:54:24,539 | INFO     | intersect: -9428756665.177048
[2025-11-27 10:55:29] 2025-11-27 15:54:24,540 | INFO     | chi2: 10.70359939479328
[2025-11-27 10:55:29] 2025-11-27 15:54:24,540 | INFO     | current chi2=10.70359939479328 (change=14.820073593499028 %)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,540 | INFO     | left removable region: 10
[2025-11-27 10:55:29] 2025-11-27 15:54:24,541 | INFO     | sum of square deviations: 177322363375.8567
[2025-11-27 10:55:29] 2025-11-27 15:54:24,565 | INFO     | sum of deviations: 2091286132367.7234
[2025-11-27 10:55:29] 2025-11-27 15:54:24,565 | INFO     | mean x: 1764232246.292771
[2025-11-27 10:55:29] 2025-11-27 15:54:24,565 | INFO     | mean y: 3429787.0710843373
[2025-11-27 10:55:29] 2025-11-27 15:54:24,566 | INFO     | intersect: -20803389841.920933
[2025-11-27 10:55:29] 2025-11-27 15:54:24,566 | INFO     | chi2: 0.0935757230267542
[2025-11-27 10:55:29] 2025-11-27 15:54:24,571 | INFO     | current memory leak: 11.79 B/s (using 830 data points, chi2=0.09)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | could have reported an average CPU frequency of 3107 MHz (32 samples)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | ..............................
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . Timing measurements:
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . get job = 0 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . initial setup = 2 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . payload setup = 5 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . stage-in = 0 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,572 | INFO     | . payload execution = 52488 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,573 | INFO     | . stage-out = 10 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,577 | INFO     | . log creation = 2 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,577 | INFO     | ..............................
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | 
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | job summary report
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | --------------------------------------------------
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | PanDA job id: 6891590332
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | task id: 47493068
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | errors: (none)
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | pilot state: finished 
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | transexitcode: 0
[2025-11-27 10:55:29] 2025-11-27 15:54:24,995 | INFO     | exeerrorcode: 0
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | exeerrordiag: 
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | exitcode: 0
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | exitmsg: OK
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | cpuconsumptiontime: 228571 s
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | nevents: 1000
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | neventsw: 0
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | pid: 1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | pgrp: 1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | corecount: 11
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | event service: False
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | sizes: {0: 2284132, 1: 2284331, 4: 2284593, 11: 2284621, 52494: 2333227, 52495: 2333226, 52506: 2342404, 52509: 2342460, 52527: 2342706}
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | --------------------------------------------------
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | 
[2025-11-27 10:55:29] 2025-11-27 15:54:24,996 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 10:55:29] 2025-11-27 15:54:25,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | job 6891590332 has completed (purged errors)
[2025-11-27 10:55:29] 2025-11-27 15:54:25,064 | INFO     | overall cleanup function is called
[2025-11-27 10:55:29] 2025-11-27 15:54:26,106 | INFO     | --- collectZombieJob: --- 10, [1644228]
[2025-11-27 10:55:29] 2025-11-27 15:54:26,106 | INFO     | zombie collector waiting for pid 1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:26,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:55:29] 2025-11-27 15:54:26,106 | INFO     | collected zombie processes
[2025-11-27 10:55:29] 2025-11-27 15:54:26,106 | INFO     | will attempt to kill all subprocesses of pid=1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:27,099 | INFO     | process IDs to be killed: [1644228] (in reverse order)
[2025-11-27 10:55:29] 2025-11-27 15:54:27,445 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:55:29] 2025-11-27 15:54:27,445 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:55:29] 2025-11-27 15:54:27,477 | INFO     | did not find any defunct processes belonging to 1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:27,556 | INFO     | did not find any defunct processes belonging to 1644228
[2025-11-27 10:55:29] 2025-11-27 15:54:27,564 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:55:29] 2025-11-27 15:54:27,565 | INFO     | ready for new job
[2025-11-27 10:55:29] 2025-11-27 15:54:27,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:55:29] 2025-11-27 15:54:27,577 | INFO     | ***************************************
[2025-11-27 10:55:29] 2025-11-27 15:54:27,577 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:55:29] 2025-11-27 15:54:27,577 | INFO     | ***************************************
[2025-11-27 10:55:29] 2025-11-27 15:54:27,577 | INFO     | 
[2025-11-27 10:55:29] 2025-11-27 15:54:27,588 | INFO     | architecture information:
[2025-11-27 10:55:29] 2025-11-27 15:54:27,593 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:55:29] 2025-11-27 15:54:27,685 | INFO     | cat /etc/os-release:
[2025-11-27 10:55:29] NAME="CentOS Linux"
[2025-11-27 10:55:29] VERSION="7 (Core)"
[2025-11-27 10:55:29] ID="centos"
[2025-11-27 10:55:29] ID_LIKE="rhel fedora"
[2025-11-27 10:55:29] VERSION_ID="7"
[2025-11-27 10:55:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:55:29] ANSI_COLOR="0;31"
[2025-11-27 10:55:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:55:29] HOME_URL="https://www.centos.org/"
[2025-11-27 10:55:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:55:29] 
[2025-11-27 10:55:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:55:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:55:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:55:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:55:29] 
[2025-11-27 10:55:29] 2025-11-27 15:54:27,686 | INFO     | ***************************************
[2025-11-27 10:55:29] 2025-11-27 15:54:28,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 10:55:29] 2025-11-27 15:54:28,310 | INFO     | sufficient remaining disk space (67901587456 B)
[2025-11-27 10:55:29] 2025-11-27 15:54:28,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:55:29] 2025-11-27 15:54:28,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:55:29] 2025-11-27 15:54:28,311 | INFO     | update_server=False
[2025-11-27 10:55:29] 2025-11-27 15:54:28,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:55:29] 2025-11-27 15:54:28,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:55:29] 2025-11-27 15:54:28,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:55:29] 2025-11-27 15:54:28,562 | INFO     | aborting loop
[2025-11-27 10:55:29] 2025-11-27 15:54:28,582 | INFO     | all payload control threads have been joined
[2025-11-27 10:55:29] 2025-11-27 15:54:29,187 | INFO     | all data control threads have been joined
[2025-11-27 10:55:29] 2025-11-27 15:54:29,338 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,457 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,568 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,570 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,588 | INFO     | [payload] control thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,614 | INFO     | [job] validate thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:29,702 | INFO     | all job control threads have been joined
[2025-11-27 10:55:29] 2025-11-27 15:54:29,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:55:29] 2025-11-27 15:54:30,057 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,107 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,193 | INFO     | [data] control thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,318 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,427 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,639 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,710 | INFO     | [job] control thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:30,760 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:54:31,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:55:29] 2025-11-27 15:54:35,355 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:55:29] 2025-11-27 15:55:00,579 | INFO     | PID=1630132 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:55:29] 2025-11-27 15:55:00,580 | INFO     | .. there are 48 such processes running
[2025-11-27 10:55:29] 2025-11-27 15:55:00,580 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:55:29] 2025-11-27 15:55:00,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:55:29] 2025-11-27 15:55:00,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:55:29] 2025-11-27 15:55:20,740 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:55:29] 2025-11-27 15:55:22,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477237520192)>', '<ExcThread(monitor, started 140476745238272)>']
[2025-11-27 10:55:29] 2025-11-27 15:55:22,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:55:29] 2025-11-27 15:55:22,805 | INFO     | [monitor] control thread has ended
[2025-11-27 10:55:29] 2025-11-27 15:55:27,767 | INFO     | all workflow threads have been joined
[2025-11-27 10:55:29] 2025-11-27 15:55:27,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:55:29] 2025-11-27 15:55:27,767 | INFO     | traces error code: 0
[2025-11-27 10:55:29] 2025-11-27 15:55:27,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:55:29] 2025-11-27 15:55:28,202 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:55:29] 2025-11-27 15:55:28,242 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:55:29] 2025-11-27 15:55:28,301 [wrapper] pilotpid: 1630132
[2025-11-27 10:55:29] 2025-11-27 15:55:28,356 [wrapper] Pilot exit status: 0
[2025-11-27 10:55:29] 2025-11-27 15:55:28,524 [wrapper] pandaids: 6891590332
[2025-11-27 10:55:29] 2025-11-27 15:55:28,716 [wrapper] cleanup supervisor_pilot  846138 1630133
[2025-11-27 10:55:29] 2025-11-27 15:55:28,728 [wrapper] Test setup, not cleaning
[2025-11-27 10:55:29] 2025-11-27 15:55:28,737 [wrapper] apfmon messages muted
[2025-11-27 10:55:29] 2025-11-27 15:55:28,788 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:55:29] 2025-11-27 15:55:28,814 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:55:29]  *** Error codes and diagnostics ***
[2025-11-27 10:55:29]     "exeErrorCode": 0,
[2025-11-27 10:55:29]     "exeErrorDiag": "",
[2025-11-27 10:55:29]     "pilotErrorCode": 0,
[2025-11-27 10:55:29]     "pilotErrorDiag": "",
[2025-11-27 10:55:29]  *** Listing of results directory ***
[2025-11-27 10:55:29] total 1305380
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:59 queuedata.json
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-27 10:55:29] -rwx------. 1 boincer umatlas     36292 Nov 18 13:00 runpilot2-wrapper.sh
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:55:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:18 run_atlas
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:18 job.xml
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas 409339612 Nov 26 20:18 EVNT.47493065._000547.pool.root.1
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 20:18 start_atlas.sh
[2025-11-27 10:55:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:18 shared
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 20:18 input.tar.gz
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:18 boinc_lockfile
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas      2772 Nov 26 20:18 pandaJob.out
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas    991530 Nov 26 20:18 agis_schedconf.cvmfs.json
[2025-11-27 10:55:29] drwx------. 5 boincer umatlas      4096 Nov 26 20:18 pilot3
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:31 boinc_task_state.xml
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 10:46 init_data.xml
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas 906138140 Nov 27 10:51 HITS.47493068._005463.pool.root.1
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas      1058 Nov 27 10:53 memory_monitor_summary.json
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas   2329665 Nov 27 10:54 log.47493068._005463.job.log.tgz.1
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas        95 Nov 27 10:54 pilot_heartbeat.json
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas      8625 Nov 27 10:54 heartbeat.json
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas      4824 Nov 27 10:55 pilotlog.txt
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:55 boinc_mmap_file
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:55 wrapper_checkpoint.txt
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas   6327546 Nov 27 10:55 log.47493068._005463.job.log.1
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas       353 Nov 27 10:55 output.list
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:55 runtime_log
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas   8673280 Nov 27 10:55 result.tar.gz
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas      8711 Nov 27 10:55 runtime_log.err
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas       661 Nov 27 10:55 RrkNDmuAff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV9FKDmfXwVUn.diag
[2025-11-27 10:55:29] -rw-r--r--. 1 boincer umatlas     21173 Nov 27 10:55 stderr.txt
[2025-11-27 10:55:29] HITS file was successfully produced:
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas 906138140 Nov 27 10:51 shared/HITS.pool.root.1
[2025-11-27 10:55:29]  *** Contents of shared directory: ***
[2025-11-27 10:55:29] total 1293728
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas 409339612 Nov 26 20:18 ATLAS.root_0
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 20:18 start_atlas.sh
[2025-11-27 10:55:29] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 20:18 input.tar.gz
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas 906138140 Nov 27 10:51 HITS.pool.root.1
[2025-11-27 10:55:29] -rw-------. 1 boincer umatlas   8673280 Nov 27 10:55 result.tar.gz
10:55:31 (1622037): run_atlas exited; CPU time 229807.546809
10:55:31 (1622037): called boinc_finish(0)

</stderr_txt>
]]>

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