Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:39:12 (822344): wrapper (7.7.26015): starting
15:39:12 (822344): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:39:12] Arguments: --nthreads 8
[2025-11-26 15:39:12] Threads: 8
[2025-11-26 15:39:12] Checking for CVMFS
[2025-11-26 15:39:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:39:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:39:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:39:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:39:14] 2.13.3.0 12004 30495 382608 153334 0 498 17169725 32935936 40265 16776704 0 160305317 99.516 187566364 33331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:39:14] CVMFS is ok
[2025-11-26 15:39:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:39:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:39:14] Further information can be found at the LHC@home message board.
[2025-11-26 15:39:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:39:14] Checking for apptainer binary...
[2025-11-26 15:39:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:39:14] Running /usr/bin/apptainer --version
[2025-11-26 15:39:14] apptainer version 1.4.4-1.el9
[2025-11-26 15:39:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:39:15] c6-12-29-4.aglt2.org
[2025-11-26 15:39:15] apptainer works
[2025-11-26 15:39:15] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:39:15] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:39:15] Starting ATLAS job with PandaID=6891571297
[2025-11-26 15:39:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:14:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:14:02] 2025-11-27 19:12:35,667 | INFO     | time since job start (81130s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:37,603 | INFO     | monitor loop #4411: job 0:6891571297 is in state 'finished'
[2025-11-27 14:14:02] 2025-11-27 19:12:37,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:14:02] 2025-11-27 19:12:37,674 | INFO     | time since job start (81132s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:39,706 | INFO     | time since job start (81134s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:40,141 | INFO     | monitor loop #4412: job 0:6891571297 is in state 'finished'
[2025-11-27 14:14:02] 2025-11-27 19:12:40,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:14:02] 2025-11-27 19:12:41,721 | INFO     | time since job start (81136s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:42,664 | INFO     | monitor loop #4413: job 0:6891571297 is in state 'finished'
[2025-11-27 14:14:02] 2025-11-27 19:12:42,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:14:02] 2025-11-27 19:12:43,745 | INFO     | time since job start (81138s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:45,169 | INFO     | monitor loop #4414: job 0:6891571297 is in state 'finished'
[2025-11-27 14:14:02] 2025-11-27 19:12:45,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:14:02] 2025-11-27 19:12:45,769 | INFO     | time since job start (81140s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:45,802 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:14:02] 2025-11-27 19:12:45,892 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2658.86925
[2025-11-27 14:14:02] 2025-11-27 19:12:46,116 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6891571297/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:14:02] 2025-11-27 19:12:46,117 | INFO     | extracted standard info from prmon json
[2025-11-27 14:14:02] 2025-11-27 19:12:46,117 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:14:02] 2025-11-27 19:12:46,117 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:14:02] 2025-11-27 19:12:46,248 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:14:02] 2025-11-27 19:12:46,250 | INFO     | sum of square deviations: 724525985831.2767
[2025-11-27 14:14:02] 2025-11-27 19:12:46,572 | INFO     | sum of deviations: 3296808330630.214
[2025-11-27 14:14:02] 2025-11-27 19:12:46,573 | INFO     | mean x: 1764230229.720422
[2025-11-27 14:14:02] 2025-11-27 19:12:46,573 | INFO     | mean y: 2876713.9736247174
[2025-11-27 14:14:02] 2025-11-27 19:12:46,573 | INFO     | intersect: -8024894590.6244335
[2025-11-27 14:14:02] 2025-11-27 19:12:46,582 | INFO     | chi2: 19.669495243368054
[2025-11-27 14:14:02] 2025-11-27 19:12:46,584 | INFO     | sum of square deviations: 716368523052.025
[2025-11-27 14:14:02] 2025-11-27 19:12:46,834 | INFO     | sum of deviations: 3724778196705.3843
[2025-11-27 14:14:02] 2025-11-27 19:12:46,835 | INFO     | mean x: 1764230077.241301
[2025-11-27 14:14:02] 2025-11-27 19:12:46,835 | INFO     | mean y: 2884712.121028744
[2025-11-27 14:14:02] 2025-11-27 19:12:46,835 | INFO     | intersect: -9170278979.77812
[2025-11-27 14:14:02] 2025-11-27 19:12:46,837 | INFO     | chi2: 16.65525698573662
[2025-11-27 14:14:02] 2025-11-27 19:12:46,837 | INFO     | current chi2=16.65525698573662 (change=15.324431157671631 %)
[2025-11-27 14:14:02] 2025-11-27 19:12:46,837 | INFO     | right removable region: 1321
[2025-11-27 14:14:02] 2025-11-27 19:12:46,885 | INFO     | sum of square deviations: 716363973234.5414
[2025-11-27 14:14:02] 2025-11-27 19:12:47,523 | INFO     | sum of deviations: 2751491087897.612
[2025-11-27 14:14:02] 2025-11-27 19:12:47,524 | INFO     | mean x: 1764230382.2420576
[2025-11-27 14:14:02] 2025-11-27 19:12:47,524 | INFO     | mean y: 2886902.938729198
[2025-11-27 14:14:02] 2025-11-27 19:12:47,524 | INFO     | intersect: -6773367005.837761
[2025-11-27 14:14:02] 2025-11-27 19:12:47,525 | INFO     | chi2: 15.297429038893325
[2025-11-27 14:14:02] 2025-11-27 19:12:47,526 | INFO     | current chi2=15.297429038893325 (change=22.22764819523701 %)
[2025-11-27 14:14:02] 2025-11-27 19:12:47,526 | INFO     | left removable region: 10
[2025-11-27 14:14:02] 2025-11-27 19:12:47,578 | INFO     | sum of square deviations: 698629298605.0497
[2025-11-27 14:14:02] 2025-11-27 19:12:47,759 | INFO     | monitor loop #4415: job 0:6891571297 is in state 'finished'
[2025-11-27 14:14:02] 2025-11-27 19:12:47,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:14:02] 2025-11-27 19:12:47,870 | INFO     | time since job start (81142s) is within the limit (172800.0s)
[2025-11-27 14:14:02] 2025-11-27 19:12:47,893 | INFO     | sum of deviations: 2796406341868.763
[2025-11-27 14:14:02] 2025-11-27 19:12:47,898 | INFO     | mean x: 1764230351.7879481
[2025-11-27 14:14:02] 2025-11-27 19:12:47,898 | INFO     | mean y: 2905310.9344012206
[2025-11-27 14:14:02] 2025-11-27 19:12:47,898 | INFO     | intersect: -7058786711.011839
[2025-11-27 14:14:02] 2025-11-27 19:12:47,900 | INFO     | chi2: 8.635368749199529
[2025-11-27 14:14:02] 2025-11-27 19:12:47,900 | INFO     | current memory leak: 4.00 B/s (using 1311 data points, chi2=8.64)
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | could have reported an average CPU frequency of 2639 MHz (48 samples)
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | ..............................
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . Timing measurements:
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . get job = 0 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . initial setup = 7 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . payload setup = 39 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . stage-in = 0 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . payload execution = 80964 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,902 | INFO     | . stage-out = 12 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,903 | INFO     | . log creation = 3 s
[2025-11-27 14:14:02] 2025-11-27 19:12:47,903 | INFO     | ..............................
[2025-11-27 14:14:02] 2025-11-27 19:12:48,373 | INFO     | 
[2025-11-27 14:14:02] 2025-11-27 19:12:48,373 | INFO     | job summary report
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | --------------------------------------------------
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | PanDA job id: 6891571297
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | task id: 47493068
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | errors: (none)
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | pilot state: finished 
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | transexitcode: 0
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | exeerrorcode: 0
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | exeerrordiag: 
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | exitcode: 0
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | exitmsg: OK
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | cpuconsumptiontime: 256195 s
[2025-11-27 14:14:02] 2025-11-27 19:12:48,374 | INFO     | nevents: 1000
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | neventsw: 0
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | pid: 851387
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | pgrp: 851387
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | corecount: 8
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | event service: False
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | sizes: {0: 2284077, 1: 2284161, 2: 2284332, 3: 2284360, 14: 2284388, 25: 2284416, 36: 2284572, 37: 2284862, 47: 2284890, 81008: 2345985, 81010: 2345984, 81023: 235
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | --------------------------------------------------
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | 
[2025-11-27 14:14:02] 2025-11-27 19:12:48,375 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 14:14:02] 2025-11-27 19:12:48,504 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:14:02] 2025-11-27 19:12:48,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:14:02] 2025-11-27 19:12:48,509 | INFO     | job 6891571297 has completed (purged errors)
[2025-11-27 14:14:02] 2025-11-27 19:12:48,509 | INFO     | overall cleanup function is called
[2025-11-27 14:14:02] 2025-11-27 19:12:49,547 | INFO     | --- collectZombieJob: --- 10, [851387]
[2025-11-27 14:14:02] 2025-11-27 19:12:49,547 | INFO     | zombie collector waiting for pid 851387
[2025-11-27 14:14:02] 2025-11-27 19:12:49,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:14:02] 2025-11-27 19:12:49,548 | INFO     | collected zombie processes
[2025-11-27 14:14:02] 2025-11-27 19:12:49,548 | INFO     | will attempt to kill all subprocesses of pid=851387
[2025-11-27 14:14:02] 2025-11-27 19:12:52,848 | INFO     | process IDs to be killed: [851387] (in reverse order)
[2025-11-27 14:14:02] 2025-11-27 19:12:53,244 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:14:02] 2025-11-27 19:12:53,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:14:02] 2025-11-27 19:12:53,301 | INFO     | did not find any defunct processes belonging to 851387
[2025-11-27 14:14:02] 2025-11-27 19:12:53,349 | INFO     | did not find any defunct processes belonging to 851387
[2025-11-27 14:14:02] 2025-11-27 19:12:53,355 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:14:02] 2025-11-27 19:12:53,355 | INFO     | ready for new job
[2025-11-27 14:14:02] 2025-11-27 19:12:53,356 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:14:02] 2025-11-27 19:12:53,364 | INFO     | ***************************************
[2025-11-27 14:14:02] 2025-11-27 19:12:53,364 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:14:02] 2025-11-27 19:12:53,364 | INFO     | ***************************************
[2025-11-27 14:14:02] 2025-11-27 19:12:53,364 | INFO     | 
[2025-11-27 14:14:02] 2025-11-27 19:12:53,370 | INFO     | architecture information:
[2025-11-27 14:14:02] 2025-11-27 19:12:53,371 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:14:02] 2025-11-27 19:12:53,425 | INFO     | cat /etc/os-release:
[2025-11-27 14:14:02] NAME="CentOS Linux"
[2025-11-27 14:14:02] VERSION="7 (Core)"
[2025-11-27 14:14:02] ID="centos"
[2025-11-27 14:14:02] ID_LIKE="rhel fedora"
[2025-11-27 14:14:02] VERSION_ID="7"
[2025-11-27 14:14:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:14:02] ANSI_COLOR="0;31"
[2025-11-27 14:14:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:14:02] HOME_URL="https://www.centos.org/"
[2025-11-27 14:14:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:14:02] 
[2025-11-27 14:14:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:14:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:14:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:14:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:14:02] 
[2025-11-27 14:14:02] 2025-11-27 19:12:53,426 | INFO     | ***************************************
[2025-11-27 14:14:02] 2025-11-27 19:12:53,931 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 14:14:02] 2025-11-27 19:12:54,056 | INFO     | sufficient remaining disk space (88306876416 B)
[2025-11-27 14:14:02] 2025-11-27 19:12:54,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:14:02] 2025-11-27 19:12:54,062 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:14:02] 2025-11-27 19:12:54,062 | INFO     | update_server=False
[2025-11-27 14:14:02] 2025-11-27 19:12:54,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:14:02] 2025-11-27 19:12:54,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:14:02] 2025-11-27 19:12:54,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:14:02] 2025-11-27 19:12:54,068 | INFO     | aborting loop
[2025-11-27 14:14:02] 2025-11-27 19:12:54,630 | INFO     | all payload control threads have been joined
[2025-11-27 14:14:02] 2025-11-27 19:12:54,807 | INFO     | all data control threads have been joined
[2025-11-27 14:14:02] 2025-11-27 19:12:55,067 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,093 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,104 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:14:02] 2025-11-27 19:12:55,227 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,254 | INFO     | all job control threads have been joined
[2025-11-27 14:14:02] 2025-11-27 19:12:55,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,640 | INFO     | [payload] control thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,812 | INFO     | [data] control thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:55,897 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,262 | INFO     | [job] control thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,502 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,503 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,505 | INFO     | [job] validate thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,506 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:56,656 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:12:57,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:14:02] 2025-11-27 19:12:57,207 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:13:01,044 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:14:02] 2025-11-27 19:13:22,823 | INFO     | PID=829632 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 14:14:02] 2025-11-27 19:13:22,825 | INFO     | .. there are 60 such processes running
[2025-11-27 14:14:02] 2025-11-27 19:13:22,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:14:02] 2025-11-27 19:13:22,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:14:02] 2025-11-27 19:13:22,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:14:02] 2025-11-27 19:13:53,424 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:14:02] 2025-11-27 19:13:54,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551767295808)>', '<ExcThread(monitor, started 140551194146560)>']
[2025-11-27 14:14:02] 2025-11-27 19:13:55,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:14:02] 2025-11-27 19:13:55,091 | INFO     | [monitor] control thread has ended
[2025-11-27 14:14:02] 2025-11-27 19:13:59,916 | INFO     | all workflow threads have been joined
[2025-11-27 14:14:02] 2025-11-27 19:13:59,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:14:02] 2025-11-27 19:13:59,917 | INFO     | traces error code: 0
[2025-11-27 14:14:02] 2025-11-27 19:13:59,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:14:02] 2025-11-27 19:14:00,972 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:14:02] 2025-11-27 19:14:00,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:14:02] 2025-11-27 19:14:01,020 [wrapper] pilotpid: 829632
[2025-11-27 14:14:02] 2025-11-27 19:14:01,036 [wrapper] Pilot exit status: 0
[2025-11-27 14:14:02] 2025-11-27 19:14:01,146 [wrapper] pandaids: 6891571297
[2025-11-27 14:14:02] 2025-11-27 19:14:01,704 [wrapper] cleanup supervisor_pilot 3473682 829633
[2025-11-27 14:14:02] 2025-11-27 19:14:01,715 [wrapper] Test setup, not cleaning
[2025-11-27 14:14:02] 2025-11-27 19:14:01,735 [wrapper] apfmon messages muted
[2025-11-27 14:14:02] 2025-11-27 19:14:01,788 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:14:02] 2025-11-27 19:14:01,807 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:14:02]  *** Error codes and diagnostics ***
[2025-11-27 14:14:02]     "exeErrorCode": 0,
[2025-11-27 14:14:02]     "exeErrorDiag": "",
[2025-11-27 14:14:02]     "pilotErrorCode": 0,
[2025-11-27 14:14:02]     "pilotErrorDiag": "",
[2025-11-27 14:14:02]  *** Listing of results directory ***
[2025-11-27 14:14:02] total 1318320
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-27 14:14:02] -rwx------. 1 boincer umatlas     36292 Nov 18 10:50 runpilot2-wrapper.sh
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:50 queuedata.json
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:14:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:39 run_atlas
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:39 job.xml
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas 409619569 Nov 26 15:39 EVNT.47493065._000278.pool.root.1
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 15:39 start_atlas.sh
[2025-11-27 14:14:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:39 shared
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 15:39 input.tar.gz
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:39 boinc_lockfile
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 15:39 pandaJob.out
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas    991538 Nov 26 15:40 agis_schedconf.cvmfs.json
[2025-11-27 14:14:02] drwx------. 5 boincer umatlas      4096 Nov 26 15:40 pilot3
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:35 boinc_task_state.xml
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas 912494762 Nov 27 14:10 HITS.47493068._002777.pool.root.1
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas      1059 Nov 27 14:11 memory_monitor_summary.json
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas   2337738 Nov 27 14:12 log.47493068._002777.job.log.tgz.1
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas      8627 Nov 27 14:12 heartbeat.json
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 14:12 init_data.xml
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas        95 Nov 27 14:13 pilot_heartbeat.json
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:13 boinc_mmap_file
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:13 wrapper_checkpoint.txt
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas      4823 Nov 27 14:13 pilotlog.txt
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas   9627420 Nov 27 14:14 log.47493068._002777.job.log.1
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas       353 Nov 27 14:14 output.list
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:14 runtime_log
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas  11980800 Nov 27 14:14 result.tar.gz
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas      8714 Nov 27 14:14 runtime_log.err
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas       662 Nov 27 14:14 DlrLDmS9cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmggFKDmYEJTXm.diag
[2025-11-27 14:14:02] -rw-r--r--. 1 boincer umatlas     21796 Nov 27 14:14 stderr.txt
[2025-11-27 14:14:02] HITS file was successfully produced:
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas 912494762 Nov 27 14:10 shared/HITS.pool.root.1
[2025-11-27 14:14:02]  *** Contents of shared directory: ***
[2025-11-27 14:14:02] total 1303436
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas 409619569 Nov 26 15:39 ATLAS.root_0
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 15:39 start_atlas.sh
[2025-11-27 14:14:02] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 15:39 input.tar.gz
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas 912494762 Nov 27 14:10 HITS.pool.root.1
[2025-11-27 14:14:02] -rw-------. 1 boincer umatlas  11980800 Nov 27 14:14 result.tar.gz
14:14:04 (822344): run_atlas exited; CPU time 259809.959995
14:14:04 (822344): called boinc_finish(0)

</stderr_txt>
]]>

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