Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
20:53:05 (2015388): wrapper (7.7.26015): starting
20:53:05 (2015388): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:53:05] Arguments: --nthreads 8
[2025-11-26 20:53:05] Threads: 8
[2025-11-26 20:53:05] Checking for CVMFS
[2025-11-26 20:53:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:53:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:53:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:53:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:53:05] 2.13.3.0 1999684 0 32620 153334 3 19 3345370 4096001 205 130560 0 38925 99.987 1366 1093 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-26 20:53:05] CVMFS is ok
[2025-11-26 20:53:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:53:06] Checking for apptainer binary...
[2025-11-26 20:53:06] apptainer is not installed, using version from CVMFS
[2025-11-26 20:53:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:53:06] senture-c621e-l
[2025-11-26 20:53:06] apptainer works
[2025-11-26 20:53:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:53:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:53:06] Starting ATLAS job with PandaID=6891561615
[2025-11-26 20:53:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:54:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:54:07] 2025-11-27 04:53:21,293 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-27 04:54:07] 2025-11-27 04:53:21,299 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6891561615/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,300 | INFO     | extracted standard info from prmon json
[2025-11-27 04:54:07] 2025-11-27 04:53:21,300 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 04:54:07] 2025-11-27 04:53:21,300 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 04:54:07] 2025-11-27 04:53:21,304 | INFO     | fitting pss+swap vs Time
[2025-11-27 04:54:07] 2025-11-27 04:53:21,304 | INFO     | sum of square deviations: 32606710752.625
[2025-11-27 04:54:07] 2025-11-27 04:53:21,307 | INFO     | sum of deviations: 361659403123.6248
[2025-11-27 04:54:07] 2025-11-27 04:53:21,307 | INFO     | mean x: 1764204781.625
[2025-11-27 04:54:07] 2025-11-27 04:53:21,307 | INFO     | mean y: 2848605.76059322
[2025-11-27 04:54:07] 2025-11-27 04:53:21,307 | INFO     | intersect: -19564940772.04339
[2025-11-27 04:54:07] 2025-11-27 04:53:21,307 | INFO     | chi2: 4.044084898637736
[2025-11-27 04:54:07] 2025-11-27 04:53:21,308 | INFO     | sum of square deviations: 31581444407.546066
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | sum of deviations: 474867426982.44275
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | mean x: 1764204629.1263382
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | mean y: 2865417.890792291
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | intersect: -26524208584.575157
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | chi2: 2.213641504188835
[2025-11-27 04:54:07] 2025-11-27 04:53:21,310 | INFO     | current chi2=2.213641504188835 (change=45.26223955054682 %)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,311 | INFO     | sum of square deviations: 30577871034.21856
[2025-11-27 04:54:07] 2025-11-27 04:53:21,313 | INFO     | sum of deviations: 498380565753.6587
[2025-11-27 04:54:07] 2025-11-27 04:53:21,313 | INFO     | mean x: 1764204476.6255412
[2025-11-27 04:54:07] 2025-11-27 04:53:21,313 | INFO     | mean y: 2868962.367965368
[2025-11-27 04:54:07] 2025-11-27 04:53:21,313 | INFO     | intersect: -28751429339.8861
[2025-11-27 04:54:07] 2025-11-27 04:53:21,314 | INFO     | chi2: 1.9518814348619913
[2025-11-27 04:54:07] 2025-11-27 04:53:21,314 | INFO     | current chi2=1.9518814348619913 (change=11.824862735520627 %)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,314 | INFO     | right removable region: 461
[2025-11-27 04:54:07] 2025-11-27 04:53:21,314 | INFO     | sum of square deviations: 31581408417.54606
[2025-11-27 04:54:07] 2025-11-27 04:53:21,316 | INFO     | sum of deviations: 252826255239.1735
[2025-11-27 04:54:07] 2025-11-27 04:53:21,316 | INFO     | mean x: 1764204934.1263382
[2025-11-27 04:54:07] 2025-11-27 04:53:21,316 | INFO     | mean y: 2864738.5224839402
[2025-11-27 04:54:07] 2025-11-27 04:53:21,316 | INFO     | intersect: -14120549932.300894
[2025-11-27 04:54:07] 2025-11-27 04:53:21,317 | INFO     | chi2: 2.242043341425849
[2025-11-27 04:54:07] 2025-11-27 04:53:21,317 | INFO     | current chi2=2.242043341425849 (change=44.55993388810681 %)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,317 | INFO     | sum of square deviations: 30577827419.96529
[2025-11-27 04:54:07] 2025-11-27 04:53:21,319 | INFO     | sum of deviations: 223813293260.90463
[2025-11-27 04:54:07] 2025-11-27 04:53:21,319 | INFO     | mean x: 1764205086.6277056
[2025-11-27 04:54:07] 2025-11-27 04:53:21,319 | INFO     | mean y: 2869143.976190476
[2025-11-27 04:54:07] 2025-11-27 04:53:21,319 | INFO     | intersect: -12910165683.605244
[2025-11-27 04:54:07] 2025-11-27 04:53:21,320 | INFO     | chi2: 2.1902489563018506
[2025-11-27 04:54:07] 2025-11-27 04:53:21,320 | INFO     | current chi2=2.1902489563018506 (change=2.3101420105045536 %)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,320 | INFO     | left removable region: 20
[2025-11-27 04:54:07] 2025-11-27 04:53:21,320 | INFO     | sum of square deviations: 26594787736.37191
[2025-11-27 04:54:07] 2025-11-27 04:53:21,322 | INFO     | sum of deviations: 315920566903.5919
[2025-11-27 04:54:07] 2025-11-27 04:53:21,322 | INFO     | mean x: 1764205056.1315193
[2025-11-27 04:54:07] 2025-11-27 04:53:21,322 | INFO     | mean y: 2897225.4897959186
[2025-11-27 04:54:07] 2025-11-27 04:53:21,322 | INFO     | intersect: -20954166504.14488
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | chi2: 0.062070907862353746
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | current memory leak: 11.88 B/s (using 441 data points, chi2=0.06)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | ..............................
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . Timing measurements:
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . get job = 0 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . initial setup = 1 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . payload setup = 4 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . stage-in = 0 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . payload execution = 28778 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . stage-out = 1 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,323 | INFO     | . log creation = 0 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,324 | INFO     | ..............................
[2025-11-27 04:54:07] 2025-11-27 04:53:21,368 | INFO     | 
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | job summary report
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | --------------------------------------------------
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | PanDA job id: 6891561615
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | task id: 47493068
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | errors: (none)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | pilot state: finished 
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | transexitcode: 0
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | exeerrorcode: 0
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | exeerrordiag: 
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | exitcode: 0
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | exitmsg: OK
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | cpuconsumptiontime: 224101 s
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | nevents: 1000
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | neventsw: 0
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | pid: 2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | pgrp: 2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | corecount: 8
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | event service: False
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | sizes: {0: 2284080, 1: 2284335, 4: 2284597, 11: 2284625, 28787: 2322410, 28789: 2331602, 28794: 2331792}
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | --------------------------------------------------
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | 
[2025-11-27 04:54:07] 2025-11-27 04:53:21,369 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-27 04:54:07] 2025-11-27 04:53:21,388 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,388 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,388 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,388 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,388 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | job 6891561615 has completed (purged errors)
[2025-11-27 04:54:07] 2025-11-27 04:53:21,389 | INFO     | overall cleanup function is called
[2025-11-27 04:54:07] 2025-11-27 04:53:22,401 | INFO     | --- collectZombieJob: --- 10, [2079857]
[2025-11-27 04:54:07] 2025-11-27 04:53:22,402 | INFO     | zombie collector waiting for pid 2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:22,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:54:07] 2025-11-27 04:53:22,402 | INFO     | collected zombie processes
[2025-11-27 04:54:07] 2025-11-27 04:53:22,402 | INFO     | will attempt to kill all subprocesses of pid=2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:22,528 | INFO     | process IDs to be killed: [2079857] (in reverse order)
[2025-11-27 04:54:07] 2025-11-27 04:53:22,600 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:54:07] 2025-11-27 04:53:22,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:54:07] 2025-11-27 04:53:22,605 | INFO     | did not find any defunct processes belonging to 2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:22,609 | INFO     | did not find any defunct processes belonging to 2079857
[2025-11-27 04:54:07] 2025-11-27 04:53:22,612 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:54:07] 2025-11-27 04:53:22,612 | INFO     | ready for new job
[2025-11-27 04:54:07] 2025-11-27 04:53:22,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:54:07] 2025-11-27 04:53:22,614 | INFO     | ***************************************
[2025-11-27 04:54:07] 2025-11-27 04:53:22,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:54:07] 2025-11-27 04:53:22,614 | INFO     | ***************************************
[2025-11-27 04:54:07] 2025-11-27 04:53:22,614 | INFO     | 
[2025-11-27 04:54:07] 2025-11-27 04:53:22,616 | INFO     | pilot is running in a VM
[2025-11-27 04:54:07] 2025-11-27 04:53:22,616 | INFO     | architecture information:
[2025-11-27 04:54:07] 2025-11-27 04:53:22,617 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:54:07] 2025-11-27 04:53:22,631 | INFO     | cat /etc/os-release:
[2025-11-27 04:54:07] NAME="CentOS Linux"
[2025-11-27 04:54:07] VERSION="7 (Core)"
[2025-11-27 04:54:07] ID="centos"
[2025-11-27 04:54:07] ID_LIKE="rhel fedora"
[2025-11-27 04:54:07] VERSION_ID="7"
[2025-11-27 04:54:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:54:07] ANSI_COLOR="0;31"
[2025-11-27 04:54:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:54:07] HOME_URL="https://www.centos.org/"
[2025-11-27 04:54:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:54:07] 
[2025-11-27 04:54:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:54:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:54:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:54:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:54:07] 
[2025-11-27 04:54:07] 2025-11-27 04:53:22,631 | INFO     | ***************************************
[2025-11-27 04:54:07] 2025-11-27 04:53:23,134 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-27 04:54:07] 2025-11-27 04:53:23,149 | INFO     | sufficient remaining disk space (104917368832 B)
[2025-11-27 04:54:07] 2025-11-27 04:53:23,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | INFO     | update_server=False
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:54:07] 2025-11-27 04:53:23,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:54:07] 2025-11-27 04:53:23,426 | INFO     | all payload control threads have been joined
[2025-11-27 04:54:07] 2025-11-27 04:53:23,568 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 04:54:07] 2025-11-27 04:53:23,569 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 04:54:07] 2025-11-27 04:53:23,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:54:07] 2025-11-27 04:53:23,569 | INFO     | will abort loop
[2025-11-27 04:54:07] 2025-11-27 04:53:23,682 | INFO     | all data control threads have been joined
[2025-11-27 04:54:07] 2025-11-27 04:53:24,155 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,156 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,263 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,291 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,431 | INFO     | [payload] control thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,538 | INFO     | all job control threads have been joined
[2025-11-27 04:54:07] 2025-11-27 04:53:24,574 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,688 | INFO     | [data] control thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:24,893 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,109 | INFO     | [job] validate thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,156 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,184 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,271 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,544 | INFO     | [job] control thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:25,547 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:27,157 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:33,919 | INFO     | job.realtimelogging is not enabled
[2025-11-27 04:54:07] 2025-11-27 04:53:34,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:54:07] 2025-11-27 04:53:53,203 | INFO     | PID=2022459 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:54:07] 2025-11-27 04:53:53,203 | INFO     | .. there are 5 such processes running
[2025-11-27 04:54:07] 2025-11-27 04:53:53,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:54:07] 2025-11-27 04:53:53,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:54:07] 2025-11-27 04:53:53,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:54:07] 2025-11-27 04:54:01,450 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:54:07] 2025-11-27 04:54:02,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126952960382784)>', '<ExcThread(monitor, started 126951951939328)>']
[2025-11-27 04:54:07] 2025-11-27 04:54:02,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:54:07] 2025-11-27 04:54:02,249 | INFO     | [monitor] control thread has ended
[2025-11-27 04:54:07] 2025-11-27 04:54:07,103 | INFO     | all workflow threads have been joined
[2025-11-27 04:54:07] 2025-11-27 04:54:07,104 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:54:07] 2025-11-27 04:54:07,104 | INFO     | traces error code: 0
[2025-11-27 04:54:07] 2025-11-27 04:54:07,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:54:07] 2025-11-27 04:54:07,196 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:54:07] 2025-11-27 04:54:07,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:54:07] 2025-11-27 04:54:07,201 [wrapper] pilotpid: 2022459
[2025-11-27 04:54:07] 2025-11-27 04:54:07,204 [wrapper] Pilot exit status: 0
[2025-11-27 04:54:07] 2025-11-27 04:54:07,212 [wrapper] pandaids: 6891561615
[2025-11-27 04:54:07] 2025-11-27 04:54:07,247 [wrapper] cleanup supervisor_pilot 2444939 2022460
[2025-11-27 04:54:07] 2025-11-27 04:54:07,249 [wrapper] Test setup, not cleaning
[2025-11-27 04:54:07] 2025-11-27 04:54:07,251 [wrapper] apfmon messages muted
[2025-11-27 04:54:07] 2025-11-27 04:54:07,254 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:54:07] 2025-11-27 04:54:07,256 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:54:07]  *** Error codes and diagnostics ***
[2025-11-27 04:54:07]     "exeErrorCode": 0,
[2025-11-27 04:54:07]     "exeErrorDiag": "",
[2025-11-27 04:54:07]     "pilotErrorCode": 0,
[2025-11-27 04:54:07]     "pilotErrorDiag": "",
[2025-11-27 04:54:07]  *** Listing of results directory ***
[2025-11-27 04:54:07] total 1304208
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc    576529 Nov 18 15:15 pilot3.tar.gz
[2025-11-27 04:54:07] -rwx------ 1 boinc boinc     36292 Nov 18 15:27 runpilot2-wrapper.sh
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc      5112 Nov 18 15:27 queuedata.json
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc       100 Nov 26 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:54:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 20:53 run_atlas
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc       105 Nov 26 20:53 job.xml
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc 408950908 Nov 26 20:53 EVNT.47493065._000089.pool.root.1
[2025-11-27 04:54:07] drwxrwx--x 2 boinc boinc      4096 Nov 26 20:53 shared
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc    590098 Nov 26 20:53 input.tar.gz
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc     15120 Nov 26 20:53 start_atlas.sh
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:53 boinc_setup_complete
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc      6662 Nov 26 20:53 init_data.xml
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:53 boinc_lockfile
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc      2771 Nov 26 20:53 pandaJob.out
[2025-11-27 04:54:07] -rw------- 1 boinc boinc    991538 Nov 26 20:53 agis_schedconf.cvmfs.json
[2025-11-27 04:54:07] drwx------ 5 boinc boinc      4096 Nov 26 20:53 pilot3
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc       533 Nov 27 04:45 boinc_task_state.xml
[2025-11-27 04:54:07] -rw------- 1 boinc boinc 911048608 Nov 27 04:52 HITS.47493068._000885.pool.root.1
[2025-11-27 04:54:07] -rw------- 1 boinc boinc      1031 Nov 27 04:53 memory_monitor_summary.json
[2025-11-27 04:54:07] -rw------- 1 boinc boinc   1516240 Nov 27 04:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:54:07] -rw------- 1 boinc boinc   1756166 Nov 27 04:53 log.47493068._000885.job.log.tgz.1
[2025-11-27 04:54:07] -rw------- 1 boinc boinc      8603 Nov 27 04:53 heartbeat.json
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc        29 Nov 27 04:53 wrapper_checkpoint.txt
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc      8192 Nov 27 04:53 boinc_mmap_file
[2025-11-27 04:54:07] -rw------- 1 boinc boinc        95 Nov 27 04:53 pilot_heartbeat.json
[2025-11-27 04:54:07] -rw------- 1 boinc boinc      5151 Nov 27 04:54 pilotlog.txt
[2025-11-27 04:54:07] -rw------- 1 boinc boinc   4041017 Nov 27 04:54 log.47493068._000885.job.log.1
[2025-11-27 04:54:07] -rw------- 1 boinc boinc       353 Nov 27 04:54 output.list
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc       620 Nov 27 04:54 runtime_log
[2025-11-27 04:54:07] -rw------- 1 boinc boinc   5816320 Nov 27 04:54 result.tar.gz
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc      8793 Nov 27 04:54 runtime_log.err
[2025-11-27 04:54:07] -rw------- 1 boinc boinc       657 Nov 27 04:54 4kJNDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIPFKDmjsnrVm.diag
[2025-11-27 04:54:07] -rw-r--r-- 1 boinc boinc     20973 Nov 27 04:54 stderr.txt
[2025-11-27 04:54:07] HITS file was successfully produced:
[2025-11-27 04:54:07] -rw------- 1 boinc boinc 911048608 Nov 27 04:52 shared/HITS.pool.root.1
[2025-11-27 04:54:07]  *** Contents of shared directory: ***
[2025-11-27 04:54:07] total 1295348
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc 408950908 Nov 26 20:53 ATLAS.root_0
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc    590098 Nov 26 20:53 input.tar.gz
[2025-11-27 04:54:07] -rw-r--r-- 2 boinc boinc     15120 Nov 26 20:53 start_atlas.sh
[2025-11-27 04:54:07] -rw------- 1 boinc boinc 911048608 Nov 27 04:52 HITS.pool.root.1
[2025-11-27 04:54:07] -rw------- 1 boinc boinc   5816320 Nov 27 04:54 result.tar.gz
04:54:09 (2015388): run_atlas exited; CPU time 224623.072792
04:54:09 (2015388): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN