Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:14:10 (22483): wrapper (7.7.26015): starting
01:14:10 (22483): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:14:10] Arguments: --nthreads 8
[2025-11-27 01:14:10] Threads: 8
[2025-11-27 01:14:10] Checking for CVMFS
[2025-11-27 01:14:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:14:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:14:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:14:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:14:10] 2.11.0.0 4200 66254 101180 153340 2 129 3558218 4096000 3237 130560 1 9254716 99.683 5228187 563 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:14:10] CVMFS is ok
[2025-11-27 01:14:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:14:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:14:10] Further information can be found at the LHC@home message board.
[2025-11-27 01:14:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:14:10] Checking for apptainer binary...
[2025-11-27 01:14:10] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:14:10] apptainer is not installed, using version from CVMFS
[2025-11-27 01:14:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:14:10] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927807/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node010
[2025-11-27 01:14:10] apptainer works
[2025-11-27 01:14:10] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:14:10] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:14:10] Starting ATLAS job with PandaID=6895379996
[2025-11-27 01:14:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927807/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:35:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:35:57] 2025-11-27 04:35:25,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,040 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:35:57] 2025-11-27 04:35:26,056 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2691.3207656249997
[2025-11-27 05:35:57] 2025-11-27 04:35:26,061 | INFO     | using path: /tmp/job_10927807/atlas/pilot/slots/0/PanDA_Pilot-6895379996/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,061 | INFO     | extracted standard info from prmon json
[2025-11-27 05:35:57] 2025-11-27 04:35:26,061 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:35:57] 2025-11-27 04:35:26,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:35:57] 2025-11-27 04:35:26,064 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:35:57] 2025-11-27 04:35:26,064 | INFO     | sum of square deviations: 5263458688.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | sum of deviations: 125967279752.99997
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | mean x: 1764210282.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | mean y: 2892721.953307393
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | intersect: -42218920596.82028
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | chi2: 3.174696067880046
[2025-11-27 05:35:57] 2025-11-27 04:35:26,065 | INFO     | sum of square deviations: 4962187923.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | sum of deviations: 176133966148.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | mean x: 1764210129.5
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | mean y: 2917902.6428571427
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | intersect: -62618113797.311104
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | chi2: 1.4754229447833511
[2025-11-27 05:35:57] 2025-11-27 04:35:26,066 | INFO     | current chi2=1.4754229447833511 (change=53.525537146345215 %)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,067 | INFO     | sum of square deviations: 4672638308.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,067 | INFO     | sum of deviations: 169979647295.00003
[2025-11-27 05:35:57] 2025-11-27 04:35:26,067 | INFO     | mean x: 1764209977.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | mean y: 2914660.931174089
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | intersect: -64174915908.868645
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | chi2: 1.4717263578686466
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | current chi2=1.4717263578686466 (change=0.2505442204063959 %)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | right removable region: 246
[2025-11-27 05:35:57] 2025-11-27 04:35:26,068 | INFO     | sum of square deviations: 4962187923.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | sum of deviations: 76499916023.99998
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | mean x: 1764210434.5
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | mean y: 2917576.714285714
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | intersect: -27195155568.069054
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | chi2: 1.7881303615108717
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | current chi2=1.7881303615108717 (change=43.675541743908596 %)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,069 | INFO     | sum of square deviations: 4672638308.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,070 | INFO     | sum of deviations: 62933908192.99999
[2025-11-27 05:35:57] 2025-11-27 04:35:26,070 | INFO     | mean x: 1764210587.0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,070 | INFO     | mean y: 2924715.360323887
[2025-11-27 05:35:57] 2025-11-27 04:35:26,070 | INFO     | intersect: -23758526481.34048
[2025-11-27 05:35:57] 2025-11-27 04:35:26,071 | INFO     | chi2: 1.7606565664866292
[2025-11-27 05:35:57] 2025-11-27 04:35:26,071 | INFO     | current chi2=1.7606565664866292 (change=1.5364536957489316 %)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,071 | INFO     | left removable region: 20
[2025-11-27 05:35:57] 2025-11-27 04:35:26,071 | INFO     | sum of square deviations: 3579276412.5
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | sum of deviations: 86012908632.5
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | mean x: 1764210556.5
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | mean y: 2961108.243362832
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | intersect: -42392446207.82306
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | chi2: 0.025802480385309422
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | current memory leak: 24.03 B/s (using 226 data points, chi2=0.03)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | could have reported an average CPU frequency of 2966 MHz (12 samples)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | ..............................
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . Timing measurements:
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . get job = 0 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . initial setup = 1 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . payload setup = 2 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . stage-in = 0 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . payload execution = 15634 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . stage-out = 1 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,072 | INFO     | . log creation = 0 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,073 | INFO     | ..............................
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | 
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | job summary report
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | --------------------------------------------------
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | PanDA job id: 6895379996
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | task id: 47556137
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | errors: (none)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | pilot state: finished 
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | transexitcode: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | exeerrorcode: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | exeerrordiag: 
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | exitcode: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | exitmsg: OK
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | cpuconsumptiontime: 118446 s
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | nevents: 1000
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | neventsw: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | pid: 28357
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | pgrp: 28357
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | corecount: 8
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | event service: False
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | sizes: {0: 2284159, 1: 2284469, 3: 2284731, 11: 2284759, 15641: 2316980, 15642: 2326004, 15646: 2326188, 15657: 2326434}
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | --------------------------------------------------
[2025-11-27 05:35:57] 2025-11-27 04:35:26,122 | INFO     | 
[2025-11-27 05:35:57] 2025-11-27 04:35:26,123 | INFO     | executing command: ls -lF /tmp/job_10927807/atlas/pilot/slots/0
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,132 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | job 6895379996 has completed (purged errors)
[2025-11-27 05:35:57] 2025-11-27 04:35:26,133 | INFO     | overall cleanup function is called
[2025-11-27 05:35:57] 2025-11-27 04:35:27,140 | INFO     | --- collectZombieJob: --- 10, [28357]
[2025-11-27 05:35:57] 2025-11-27 04:35:27,140 | INFO     | zombie collector waiting for pid 28357
[2025-11-27 05:35:57] 2025-11-27 04:35:27,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:35:57] 2025-11-27 04:35:27,140 | INFO     | collected zombie processes
[2025-11-27 05:35:57] 2025-11-27 04:35:27,140 | INFO     | will attempt to kill all subprocesses of pid=28357
[2025-11-27 05:35:57] 2025-11-27 04:35:27,252 | INFO     | process IDs to be killed: [28357] (in reverse order)
[2025-11-27 05:35:57] 2025-11-27 04:35:27,292 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:35:57] 2025-11-27 04:35:27,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:35:57] 2025-11-27 04:35:27,296 | INFO     | did not find any defunct processes belonging to 28357
[2025-11-27 05:35:57] 2025-11-27 04:35:27,299 | INFO     | did not find any defunct processes belonging to 28357
[2025-11-27 05:35:57] 2025-11-27 04:35:27,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:35:57] 2025-11-27 04:35:27,300 | INFO     | ready for new job
[2025-11-27 05:35:57] 2025-11-27 04:35:27,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:35:57] 2025-11-27 04:35:27,301 | INFO     | ***************************************
[2025-11-27 05:35:57] 2025-11-27 04:35:27,301 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:35:57] 2025-11-27 04:35:27,301 | INFO     | ***************************************
[2025-11-27 05:35:57] 2025-11-27 04:35:27,301 | INFO     | 
[2025-11-27 05:35:57] 2025-11-27 04:35:27,314 | INFO     | architecture information:
[2025-11-27 05:35:57] 2025-11-27 04:35:27,315 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:35:57] 2025-11-27 04:35:27,320 | INFO     | cat /etc/os-release:
[2025-11-27 05:35:57] NAME="CentOS Linux"
[2025-11-27 05:35:57] VERSION="7 (Core)"
[2025-11-27 05:35:57] ID="centos"
[2025-11-27 05:35:57] ID_LIKE="rhel fedora"
[2025-11-27 05:35:57] VERSION_ID="7"
[2025-11-27 05:35:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:35:57] ANSI_COLOR="0;31"
[2025-11-27 05:35:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:35:57] HOME_URL="https://www.centos.org/"
[2025-11-27 05:35:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:35:57] 
[2025-11-27 05:35:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:35:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:35:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:35:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:35:57] 
[2025-11-27 05:35:57] 2025-11-27 04:35:27,320 | INFO     | ***************************************
[2025-11-27 05:35:57] 2025-11-27 04:35:27,823 | INFO     | executing command: df -mP /tmp/job_10927807/atlas/pilot/slots/0
[2025-11-27 05:35:57] 2025-11-27 04:35:27,828 | INFO     | sufficient remaining disk space (218900725760 B)
[2025-11-27 05:35:57] 2025-11-27 04:35:27,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:35:57] 2025-11-27 04:35:27,829 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:35:57] 2025-11-27 04:35:27,829 | INFO     | update_server=False
[2025-11-27 05:35:57] 2025-11-27 04:35:27,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:35:57] 2025-11-27 04:35:27,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:35:57] 2025-11-27 04:35:28,178 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:35:57] 2025-11-27 04:35:28,178 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:35:57] 2025-11-27 04:35:28,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:35:57] 2025-11-27 04:35:28,178 | INFO     | will abort loop
[2025-11-27 05:35:57] 2025-11-27 04:35:28,604 | INFO     | all data control threads have been joined
[2025-11-27 05:35:57] 2025-11-27 04:35:28,703 | INFO     | all job control threads have been joined
[2025-11-27 05:35:57] 2025-11-27 04:35:28,834 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:28,834 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:28,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:35:57] 2025-11-27 04:35:29,110 | INFO     | all payload control threads have been joined
[2025-11-27 05:35:57] 2025-11-27 04:35:29,148 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,183 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,280 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:35:57] 2025-11-27 04:35:29,393 | INFO     | [job] validate thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,610 | INFO     | [data] control thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,708 | INFO     | [job] control thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,786 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,869 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:29,911 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:30,115 | INFO     | [payload] control thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:30,118 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:30,165 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:30,936 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:33,358 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:35:57] 2025-11-27 04:35:41,454 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:35:57] 2025-11-27 04:35:43,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-27 05:35:57] 2025-11-27 04:35:48,555 | INFO     | all workflow threads have been joined
[2025-11-27 05:35:57] 2025-11-27 04:35:48,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:35:57] 2025-11-27 04:35:48,555 | INFO     | traces error code: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:48,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | INFO     | PID=32468 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | INFO     | .. there are 5 such processes running
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:35:57] 2025-11-27 04:35:57,370 | INFO     | [monitor] control thread has ended
[2025-11-27 05:35:57] 2025-11-27 04:35:57,422 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:35:57] 2025-11-27 04:35:57,423 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:35:57] 2025-11-27 04:35:57,424 [wrapper] pilotpid: 32468
[2025-11-27 05:35:57] 2025-11-27 04:35:57,425 [wrapper] Pilot exit status: 0
[2025-11-27 05:35:57] 2025-11-27 04:35:57,429 [wrapper] pandaids: 6895379996
[2025-11-27 05:35:57] 2025-11-27 04:35:57,453 [wrapper] cleanup supervisor_pilot 31613 32469
[2025-11-27 05:35:57] 2025-11-27 04:35:57,454 [wrapper] Test setup, not cleaning
[2025-11-27 05:35:57] 2025-11-27 04:35:57,455 [wrapper] apfmon messages muted
[2025-11-27 05:35:57] 2025-11-27 04:35:57,456 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:35:57] 2025-11-27 04:35:57,457 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:35:57]  *** Error codes and diagnostics ***
[2025-11-27 05:35:57]     "exeErrorCode": 0,
[2025-11-27 05:35:57]     "exeErrorDiag": "",
[2025-11-27 05:35:57]     "pilotErrorCode": 0,
[2025-11-27 05:35:57]     "pilotErrorDiag": "",
[2025-11-27 05:35:57]  *** Listing of results directory ***
[2025-11-27 05:35:57] total 1300444
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      5112 Nov 24 03:29 queuedata.json
[2025-11-27 05:35:57] -rwx------ 1 mf493845 unix-user     36292 Nov 24 03:30 runpilot2-wrapper.sh
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user    576529 Nov 24 03:30 pilot3.tar.gz
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       100 Nov 26 23:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:35:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:29 run_atlas
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       105 Nov 26 23:29 job.xml
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:14 start_atlas.sh
[2025-11-27 05:35:57] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:14 shared
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user    590093 Nov 27 01:14 input.tar.gz
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      6391 Nov 27 01:14 init_data.xml
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user 410765619 Nov 27 01:14 EVNT.47483658._000982.pool.root.1
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user         0 Nov 27 01:14 boinc_setup_complete
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:14 boinc_mmap_file
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user         0 Nov 27 01:14 boinc_lockfile
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      2786 Nov 27 01:14 pandaJob.out
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user    991538 Nov 27 01:14 agis_schedconf.cvmfs.json
[2025-11-27 05:35:57] drwx------ 5 mf493845 unix-user       440 Nov 27 01:14 pilot3
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user 909354132 Nov 27 05:34 HITS.47556137._009689.pool.root.1
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user        95 Nov 27 05:35 pilot_heartbeat.json
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      1029 Nov 27 05:35 memory_monitor_summary.json
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user   1557349 Nov 27 05:35 log.47556137._009689.job.log.tgz.1
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      8572 Nov 27 05:35 heartbeat.json
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       820 Nov 27 05:35 pilotlog.txt
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user   2267480 Nov 27 05:35 log.47556137._009689.job.log.1
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       353 Nov 27 05:35 output.list
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       620 Nov 27 05:35 runtime_log
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user   3840000 Nov 27 05:35 result.tar.gz
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user       650 Nov 27 05:35 ZwzMDmuWbh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlsIKDmrmuXbn.diag
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:35 runtime_log.err
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user     21720 Nov 27 05:35 stderr.txt
[2025-11-27 05:35:57] HITS file was successfully produced:
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user 909354132 Nov 27 05:34 shared/HITS.pool.root.1
[2025-11-27 05:35:57]  *** Contents of shared directory: ***
[2025-11-27 05:35:57] total 1293532
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:14 start_atlas.sh
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user    590093 Nov 27 01:14 input.tar.gz
[2025-11-27 05:35:57] -rw-r--r-- 2 mf493845 unix-user 410765619 Nov 27 01:14 ATLAS.root_0
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user 909354132 Nov 27 05:34 HITS.pool.root.1
[2025-11-27 05:35:57] -rw------- 1 mf493845 unix-user   3840000 Nov 27 05:35 result.tar.gz
05:35:58 (22483): run_atlas exited; CPU time 118638.617041
05:35:58 (22483): called boinc_finish(0)

</stderr_txt>
]]>

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