Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:09:26 (2105): wrapper (7.7.26015): starting
01:09:26 (2105): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:09:26] Arguments: --nthreads 8
[2025-11-27 01:09:26] Threads: 8
[2025-11-27 01:09:26] Checking for CVMFS
[2025-11-27 01:09:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:09:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:09:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:09:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:09:26] 2.11.0.0 8049 66381 73376 153340 2 251 3426777 4096000 1282 130560 2 2947710 99.333 3524996 400 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:09:26] CVMFS is ok
[2025-11-27 01:09:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:09:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:09:26] Further information can be found at the LHC@home message board.
[2025-11-27 01:09:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:09:26] Checking for apptainer binary...
[2025-11-27 01:09:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:09:26] apptainer is not installed, using version from CVMFS
[2025-11-27 01:09:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:09:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927755/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node094
[2025-11-27 01:09:26] apptainer works
[2025-11-27 01:09:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:09:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:09:26] Starting ATLAS job with PandaID=6891106299
[2025-11-27 01:09:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927755/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:34:03]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:34:03] 2025-11-27 04:33:14,162 | INFO     | using path: /tmp/job_10927755/atlas/pilot/slots/0/PanDA_Pilot-6891106299/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,253 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:34:03] 2025-11-27 04:33:14,262 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2755.011609375
[2025-11-27 05:34:03] 2025-11-27 04:33:14,275 | INFO     | number of running child processes to parent process 5715: 1
[2025-11-27 05:34:03] 2025-11-27 04:33:14,275 | INFO     | maximum number of monitored processes: 16
[2025-11-27 05:34:03] 2025-11-27 04:33:14,280 | INFO     | using path: /tmp/job_10927755/atlas/pilot/slots/0/PanDA_Pilot-6891106299/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,280 | INFO     | extracted standard info from prmon json
[2025-11-27 05:34:03] 2025-11-27 04:33:14,280 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:34:03] 2025-11-27 04:33:14,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:34:03] 2025-11-27 04:33:14,283 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:34:03] 2025-11-27 04:33:14,283 | INFO     | sum of square deviations: 5387301010.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | sum of deviations: 142326070103.99997
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | mean x: 1764210058.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | mean y: 2902945.6872586873
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | intersect: -46605423547.858696
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | chi2: 2.36454981325012
[2025-11-27 05:34:03] 2025-11-27 04:33:14,284 | INFO     | sum of square deviations: 5081276667.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,285 | INFO     | sum of deviations: 175728678518.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,285 | INFO     | mean x: 1764209905.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,285 | INFO     | mean y: 2919424.909448819
[2025-11-27 05:34:03] 2025-11-27 04:33:14,285 | INFO     | intersect: -61009754280.829636
[2025-11-27 05:34:03] 2025-11-27 04:33:14,286 | INFO     | chi2: 1.4491381544851294
[2025-11-27 05:34:03] 2025-11-27 04:33:14,286 | INFO     | current chi2=1.4491381544851294 (change=38.713993405228344 %)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,286 | INFO     | sum of square deviations: 4787066500.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | sum of deviations: 169411736501.99997
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | mean x: 1764209753.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | mean y: 2916150.4658634537
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | intersect: -62431528369.88797
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | chi2: 1.4461524507520087
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | current chi2=1.4461524507520087 (change=0.20603306343703892 %)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | right removable region: 248
[2025-11-27 05:34:03] 2025-11-27 04:33:14,287 | INFO     | sum of square deviations: 5081276667.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | sum of deviations: 93468892547.00005
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | mean x: 1764210210.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | mean y: 2927105.566929134
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | intersect: -32449305942.52557
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | chi2: 0.983030470344129
[2025-11-27 05:34:03] 2025-11-27 04:33:14,288 | INFO     | current chi2=0.983030470344129 (change=58.4263158747781 %)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,289 | INFO     | sum of square deviations: 4787066500.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,289 | INFO     | sum of deviations: 80203320878.99998
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | mean x: 1764210363.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | mean y: 2933978.425702811
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | intersect: -29554944493.02358
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | chi2: 0.9601203854661283
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | current chi2=0.9601203854661283 (change=2.330556942958299 %)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | left removable region: 20
[2025-11-27 05:34:03] 2025-11-27 04:33:14,290 | INFO     | sum of square deviations: 3675146117.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | sum of deviations: 87030183642.0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | mean x: 1764210332.5
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | mean y: 2960915.3421052634
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | intersect: -41774847186.04634
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | chi2: 0.02293503532235225
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | current memory leak: 23.68 B/s (using 228 data points, chi2=0.02)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | could have reported an average CPU frequency of 3015 MHz (12 samples)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | ..............................
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | . Timing measurements:
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | . get job = 0 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | . initial setup = 1 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,291 | INFO     | . payload setup = 2 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,292 | INFO     | . stage-in = 0 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,292 | INFO     | . payload execution = 15800 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,292 | INFO     | . stage-out = 1 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,292 | INFO     | . log creation = 0 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,292 | INFO     | ..............................
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | 
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | job summary report
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | --------------------------------------------------
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | PanDA job id: 6891106299
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | task id: 47483661
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | errors: (none)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | pilot state: finished 
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | transexitcode: 0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | exeerrorcode: 0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | exeerrordiag: 
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | exitcode: 0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | exitmsg: OK
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | cpuconsumptiontime: 119730 s
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | nevents: 1000
[2025-11-27 05:34:03] 2025-11-27 04:33:14,340 | INFO     | neventsw: 0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | pid: 5715
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | pgrp: 5715
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | corecount: 8
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | event service: False
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | sizes: {0: 2284430, 2: 2284692, 10: 2284720, 15807: 2316985, 15808: 2326065, 15810: 2326255}
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | --------------------------------------------------
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | 
[2025-11-27 05:34:03] 2025-11-27 04:33:14,341 | INFO     | executing command: ls -lF /tmp/job_10927755/atlas/pilot/slots/0
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | job 6891106299 has completed (purged errors)
[2025-11-27 05:34:03] 2025-11-27 04:33:14,351 | INFO     | overall cleanup function is called
[2025-11-27 05:34:03] 2025-11-27 04:33:15,358 | INFO     | --- collectZombieJob: --- 10, [5715]
[2025-11-27 05:34:03] 2025-11-27 04:33:15,358 | INFO     | zombie collector waiting for pid 5715
[2025-11-27 05:34:03] 2025-11-27 04:33:15,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:34:03] 2025-11-27 04:33:15,358 | INFO     | collected zombie processes
[2025-11-27 05:34:03] 2025-11-27 04:33:15,358 | INFO     | will attempt to kill all subprocesses of pid=5715
[2025-11-27 05:34:03] 2025-11-27 04:33:15,467 | INFO     | process IDs to be killed: [5715] (in reverse order)
[2025-11-27 05:34:03] 2025-11-27 04:33:15,508 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:34:03] 2025-11-27 04:33:15,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:34:03] 2025-11-27 04:33:15,512 | INFO     | did not find any defunct processes belonging to 5715
[2025-11-27 05:34:03] 2025-11-27 04:33:15,516 | INFO     | did not find any defunct processes belonging to 5715
[2025-11-27 05:34:03] 2025-11-27 04:33:15,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:34:03] 2025-11-27 04:33:15,516 | INFO     | ready for new job
[2025-11-27 05:34:03] 2025-11-27 04:33:15,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:34:03] 2025-11-27 04:33:15,517 | INFO     | ***************************************
[2025-11-27 05:34:03] 2025-11-27 04:33:15,517 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:34:03] 2025-11-27 04:33:15,517 | INFO     | ***************************************
[2025-11-27 05:34:03] 2025-11-27 04:33:15,517 | INFO     | 
[2025-11-27 05:34:03] 2025-11-27 04:33:15,531 | INFO     | architecture information:
[2025-11-27 05:34:03] 2025-11-27 04:33:15,531 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:34:03] 2025-11-27 04:33:15,537 | INFO     | cat /etc/os-release:
[2025-11-27 05:34:03] NAME="CentOS Linux"
[2025-11-27 05:34:03] VERSION="7 (Core)"
[2025-11-27 05:34:03] ID="centos"
[2025-11-27 05:34:03] ID_LIKE="rhel fedora"
[2025-11-27 05:34:03] VERSION_ID="7"
[2025-11-27 05:34:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:34:03] ANSI_COLOR="0;31"
[2025-11-27 05:34:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:34:03] HOME_URL="https://www.centos.org/"
[2025-11-27 05:34:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:34:03] 
[2025-11-27 05:34:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:34:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:34:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:34:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:34:03] 
[2025-11-27 05:34:03] 2025-11-27 04:33:15,537 | INFO     | ***************************************
[2025-11-27 05:34:03] 2025-11-27 04:33:16,040 | INFO     | executing command: df -mP /tmp/job_10927755/atlas/pilot/slots/0
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | INFO     | sufficient remaining disk space (213774237696 B)
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | INFO     | update_server=False
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | INFO     | aborting loop
[2025-11-27 05:34:03] 2025-11-27 04:33:16,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:34:03] 2025-11-27 04:33:16,087 | INFO     | all data control threads have been joined
[2025-11-27 05:34:03] 2025-11-27 04:33:16,708 | INFO     | all payload control threads have been joined
[2025-11-27 05:34:03] 2025-11-27 04:33:16,868 | INFO     | all job control threads have been joined
[2025-11-27 05:34:03] 2025-11-27 04:33:17,050 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,050 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,050 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,092 | INFO     | [data] control thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,259 | INFO     | [job] validate thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:34:03] 2025-11-27 04:33:17,683 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,713 | INFO     | [payload] control thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,871 | INFO     | [job] control thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:17,960 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:18,131 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:18,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:34:03] 2025-11-27 04:33:18,364 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:18,571 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:19,427 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:22,177 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:34:03] 2025-11-27 04:33:46,419 | INFO     | PID=18615 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:34:03] 2025-11-27 04:33:46,419 | INFO     | .. there are 6 such processes running
[2025-11-27 05:34:03] 2025-11-27 04:33:46,419 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:34:03] 2025-11-27 04:33:46,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:34:03] 2025-11-27 04:33:46,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:34:03] 2025-11-27 04:33:57,613 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:34:03] 2025-11-27 04:33:57,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-27 05:34:03] 2025-11-27 04:33:58,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:34:03] 2025-11-27 04:33:58,479 | INFO     | [monitor] control thread has ended
[2025-11-27 05:34:03] 2025-11-27 04:34:02,835 | INFO     | all workflow threads have been joined
[2025-11-27 05:34:03] 2025-11-27 04:34:02,836 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:34:03] 2025-11-27 04:34:02,836 | INFO     | traces error code: 0
[2025-11-27 05:34:03] 2025-11-27 04:34:02,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:34:03] 2025-11-27 04:34:02,887 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:34:03] 2025-11-27 04:34:02,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:34:03] 2025-11-27 04:34:02,889 [wrapper] pilotpid: 18615
[2025-11-27 05:34:03] 2025-11-27 04:34:02,890 [wrapper] Pilot exit status: 0
[2025-11-27 05:34:03] 2025-11-27 04:34:02,894 [wrapper] pandaids: 6891106299
[2025-11-27 05:34:03] 2025-11-27 04:34:02,919 [wrapper] cleanup supervisor_pilot 29574 18616
[2025-11-27 05:34:03] 2025-11-27 04:34:02,920 [wrapper] Test setup, not cleaning
[2025-11-27 05:34:03] 2025-11-27 04:34:02,921 [wrapper] apfmon messages muted
[2025-11-27 05:34:03] 2025-11-27 04:34:02,922 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:34:03] 2025-11-27 04:34:02,923 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:34:03]  *** Error codes and diagnostics ***
[2025-11-27 05:34:03]     "exeErrorCode": 0,
[2025-11-27 05:34:03]     "exeErrorDiag": "",
[2025-11-27 05:34:03]     "pilotErrorCode": 0,
[2025-11-27 05:34:03]     "pilotErrorDiag": "",
[2025-11-27 05:34:03]  *** Listing of results directory ***
[2025-11-27 05:34:03] total 1302984
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      5112 Nov 18 08:00 queuedata.json
[2025-11-27 05:34:03] -rwx------ 1 mf493845 unix-user     36292 Nov 18 08:00 runpilot2-wrapper.sh
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user       100 Nov 26 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:34:03] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:25 run_atlas
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user       105 Nov 26 23:25 job.xml
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 27 01:09 start_atlas.sh
[2025-11-27 05:34:03] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:09 shared
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user    590100 Nov 27 01:09 input.tar.gz
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      6391 Nov 27 01:09 init_data.xml
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user 409211244 Nov 27 01:09 EVNT.47483658._000256.pool.root.1
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user         0 Nov 27 01:09 boinc_setup_complete
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:09 boinc_mmap_file
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user         0 Nov 27 01:09 boinc_lockfile
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      2773 Nov 27 01:09 pandaJob.out
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user    991538 Nov 27 01:09 agis_schedconf.cvmfs.json
[2025-11-27 05:34:03] drwx------ 5 mf493845 unix-user       440 Nov 27 01:09 pilot3
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user 913450863 Nov 27 05:32 HITS.47483661._002253.pool.root.1
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      1023 Nov 27 05:33 memory_monitor_summary.json
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user   1559911 Nov 27 05:33 log.47483661._002253.job.log.tgz.1
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      8580 Nov 27 05:33 heartbeat.json
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user        95 Nov 27 05:33 pilot_heartbeat.json
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      4835 Nov 27 05:34 pilotlog.txt
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user   2292300 Nov 27 05:34 log.47483661._002253.job.log.1
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user       353 Nov 27 05:34 output.list
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user       620 Nov 27 05:34 runtime_log
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:34 result.tar.gz
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user      9077 Nov 27 05:34 runtime_log.err
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user       650 Nov 27 05:34 aoaNDmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyPKODmF2Ad5n.diag
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user     21700 Nov 27 05:34 stderr.txt
[2025-11-27 05:34:03] HITS file was successfully produced:
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user 913450863 Nov 27 05:32 shared/HITS.pool.root.1
[2025-11-27 05:34:03]  *** Contents of shared directory: ***
[2025-11-27 05:34:03] total 1296044
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user     15120 Nov 27 01:09 start_atlas.sh
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user    590100 Nov 27 01:09 input.tar.gz
[2025-11-27 05:34:03] -rw-r--r-- 2 mf493845 unix-user 409211244 Nov 27 01:09 ATLAS.root_0
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user 913450863 Nov 27 05:32 HITS.pool.root.1
[2025-11-27 05:34:03] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:34 result.tar.gz
05:34:04 (2105): run_atlas exited; CPU time 119930.209250
05:34:04 (2105): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN