Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:20:38 (3554203): wrapper (7.7.26015): starting
15:20:38 (3554203): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:20:38] Arguments: --nthreads 8
[2025-11-26 15:20:38] Threads: 8
[2025-11-26 15:20:38] Checking for CVMFS
[2025-11-26 15:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:20:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:20:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:20:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:20:41] 2.13.3.0 10982 30523 339632 153334 0 143 23452154 40960001 27658 16776704 0 151501743 99.693 120940851 39156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:20:41] CVMFS is ok
[2025-11-26 15:20:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:20:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:20:41] Further information can be found at the LHC@home message board.
[2025-11-26 15:20:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:20:41] Checking for apptainer binary...
[2025-11-26 15:20:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:20:41] Running /usr/bin/apptainer --version
[2025-11-26 15:20:41] apptainer version 1.4.4-1.el9
[2025-11-26 15:20:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:20:41] c6-8-12-3.aglt2.org
[2025-11-26 15:20:41] apptainer works
[2025-11-26 15:20:41] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:20:41] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:20:41] Starting ATLAS job with PandaID=6896219219
[2025-11-26 15:20:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:47:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:47:31] 2025-11-27 12:46:46,147 | INFO     | PID=3560459 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:47:31] 2025-11-27 12:46:46,147 | INFO     | .. there are 40 such processes running
[2025-11-27 07:47:31] 2025-11-27 12:46:47,148 | INFO     | time since job start (59122s) is within the limit (172800.0s)
[2025-11-27 07:47:31] 2025-11-27 12:46:47,765 | INFO     | monitor loop #3693: job 0:6896219219 is in state 'finished'
[2025-11-27 07:47:31] 2025-11-27 12:46:47,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:47:31] 2025-11-27 12:46:49,156 | INFO     | time since job start (59124s) is within the limit (172800.0s)
[2025-11-27 07:47:31] 2025-11-27 12:46:50,275 | INFO     | monitor loop #3694: job 0:6896219219 is in state 'finished'
[2025-11-27 07:47:31] 2025-11-27 12:46:50,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:47:31] 2025-11-27 12:46:51,163 | INFO     | time since job start (59126s) is within the limit (172800.0s)
[2025-11-27 07:47:31] 2025-11-27 12:46:52,799 | INFO     | monitor loop #3695: job 0:6896219219 is in state 'finished'
[2025-11-27 07:47:31] 2025-11-27 12:46:52,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:47:31] 2025-11-27 12:46:53,170 | INFO     | time since job start (59128s) is within the limit (172800.0s)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,177 | INFO     | time since job start (59130s) is within the limit (172800.0s)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,304 | INFO     | monitor loop #3696: job 0:6896219219 is in state 'finished'
[2025-11-27 07:47:31] 2025-11-27 12:46:55,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,541 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:47:31] 2025-11-27 12:46:55,545 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2935.3185000000003
[2025-11-27 07:47:31] 2025-11-27 12:46:55,555 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896219219/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,555 | INFO     | extracted standard info from prmon json
[2025-11-27 07:47:31] 2025-11-27 12:46:55,555 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:47:31] 2025-11-27 12:46:55,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:47:31] 2025-11-27 12:46:55,571 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:47:31] 2025-11-27 12:46:55,572 | INFO     | sum of square deviations: 280388818002.5914
[2025-11-27 07:47:31] 2025-11-27 12:46:55,588 | INFO     | sum of deviations: 1496035356539.1575
[2025-11-27 07:47:31] 2025-11-27 12:46:55,589 | INFO     | mean x: 1764218082.7063081
[2025-11-27 07:47:31] 2025-11-27 12:46:55,589 | INFO     | mean y: 2871465.3350568768
[2025-11-27 07:47:31] 2025-11-27 12:46:55,589 | INFO     | intersect: -9410245103.207872
[2025-11-27 07:47:31] 2025-11-27 12:46:55,590 | INFO     | chi2: 19.302436737423815
[2025-11-27 07:47:31] 2025-11-27 12:46:55,591 | INFO     | sum of square deviations: 276062440110.4582
[2025-11-27 07:47:31] 2025-11-27 12:46:55,607 | INFO     | sum of deviations: 1826921528426.2917
[2025-11-27 07:47:31] 2025-11-27 12:46:55,607 | INFO     | mean x: 1764217930.2151768
[2025-11-27 07:47:31] 2025-11-27 12:46:55,607 | INFO     | mean y: 2883123.9116424117
[2025-11-27 07:47:31] 2025-11-27 12:46:55,608 | INFO     | intersect: -11672329615.119995
[2025-11-27 07:47:31] 2025-11-27 12:46:55,609 | INFO     | chi2: 15.803244138218336
[2025-11-27 07:47:31] 2025-11-27 12:46:55,609 | INFO     | current chi2=15.803244138218336 (change=18.128242805848437 %)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,609 | INFO     | right removable region: 961
[2025-11-27 07:47:31] 2025-11-27 12:46:55,610 | INFO     | sum of square deviations: 276061433610.45825
[2025-11-27 07:47:31] 2025-11-27 12:46:55,626 | INFO     | sum of deviations: 1124627677723.021
[2025-11-27 07:47:31] 2025-11-27 12:46:55,626 | INFO     | mean x: 1764218235.2151768
[2025-11-27 07:47:31] 2025-11-27 12:46:55,627 | INFO     | mean y: 2884550.4781704783
[2025-11-27 07:47:31] 2025-11-27 12:46:55,627 | INFO     | intersect: -7184242716.513918
[2025-11-27 07:47:31] 2025-11-27 12:46:55,628 | INFO     | chi2: 15.53006761258235
[2025-11-27 07:47:31] 2025-11-27 12:46:55,628 | INFO     | current chi2=15.53006761258235 (change=19.54348653570534 %)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,628 | INFO     | left removable region: 10
[2025-11-27 07:47:31] 2025-11-27 12:46:55,629 | INFO     | sum of square deviations: 266699570787.2275
[2025-11-27 07:47:31] 2025-11-27 12:46:55,730 | INFO     | sum of deviations: 1226950108076.6924
[2025-11-27 07:47:31] 2025-11-27 12:46:55,730 | INFO     | mean x: 1764218204.7350159
[2025-11-27 07:47:31] 2025-11-27 12:46:55,730 | INFO     | mean y: 2908816.276550999
[2025-11-27 07:47:31] 2025-11-27 12:46:55,731 | INFO     | intersect: -8113368651.2167
[2025-11-27 07:47:31] 2025-11-27 12:46:55,732 | INFO     | chi2: 9.210299071502751
[2025-11-27 07:47:31] 2025-11-27 12:46:55,732 | INFO     | current memory leak: 4.60 B/s (using 951 data points, chi2=9.21)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,742 | INFO     | could have reported an average CPU frequency of 3015 MHz (36 samples)
[2025-11-27 07:47:31] 2025-11-27 12:46:55,742 | INFO     | ..............................
[2025-11-27 07:47:31] 2025-11-27 12:46:55,742 | INFO     | . Timing measurements:
[2025-11-27 07:47:31] 2025-11-27 12:46:55,742 | INFO     | . get job = 0 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,742 | INFO     | . initial setup = 4 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | . payload setup = 39 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | . stage-in = 0 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | . payload execution = 58978 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | . stage-out = 8 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | . log creation = 2 s
[2025-11-27 07:47:31] 2025-11-27 12:46:55,743 | INFO     | ..............................
[2025-11-27 07:47:31] 2025-11-27 12:46:56,340 | INFO     | 
[2025-11-27 07:47:31] 2025-11-27 12:46:56,340 | INFO     | job summary report
[2025-11-27 07:47:31] 2025-11-27 12:46:56,340 | INFO     | --------------------------------------------------
[2025-11-27 07:47:31] 2025-11-27 12:46:56,340 | INFO     | PanDA job id: 6896219219
[2025-11-27 07:47:31] 2025-11-27 12:46:56,340 | INFO     | task id: 47556161
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | errors: (none)
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | pilot state: finished 
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | transexitcode: 0
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | exeerrorcode: 0
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | exeerrordiag: 
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | exitcode: 0
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | exitmsg: OK
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | cpuconsumptiontime: 247764 s
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | nevents: 1000
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | neventsw: 0
[2025-11-27 07:47:31] 2025-11-27 12:46:56,341 | INFO     | pid: 3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | pgrp: 3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | corecount: 8
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | event service: False
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 24: 2284658, 34: 2284686, 59022: 2337287, 59032: 2346281, 59034: 2346337, 59066: 2346583}
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | --------------------------------------------------
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | 
[2025-11-27 07:47:31] 2025-11-27 12:46:56,342 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 07:47:31] 2025-11-27 12:46:56,435 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:47:31] 2025-11-27 12:46:56,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:47:31] 2025-11-27 12:46:56,437 | INFO     | job 6896219219 has completed (purged errors)
[2025-11-27 07:47:31] 2025-11-27 12:46:56,437 | INFO     | overall cleanup function is called
[2025-11-27 07:47:31] 2025-11-27 12:46:57,465 | INFO     | --- collectZombieJob: --- 10, [3585244]
[2025-11-27 07:47:31] 2025-11-27 12:46:57,465 | INFO     | zombie collector waiting for pid 3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:57,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:47:31] 2025-11-27 12:46:57,465 | INFO     | collected zombie processes
[2025-11-27 07:47:31] 2025-11-27 12:46:57,465 | INFO     | will attempt to kill all subprocesses of pid=3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:59,081 | INFO     | process IDs to be killed: [3585244] (in reverse order)
[2025-11-27 07:47:31] 2025-11-27 12:46:59,331 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:47:31] 2025-11-27 12:46:59,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:47:31] 2025-11-27 12:46:59,364 | INFO     | did not find any defunct processes belonging to 3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:59,399 | INFO     | did not find any defunct processes belonging to 3585244
[2025-11-27 07:47:31] 2025-11-27 12:46:59,404 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:47:31] 2025-11-27 12:46:59,404 | INFO     | ready for new job
[2025-11-27 07:47:31] 2025-11-27 12:46:59,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:47:31] 2025-11-27 12:46:59,413 | INFO     | ***************************************
[2025-11-27 07:47:31] 2025-11-27 12:46:59,413 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:47:31] 2025-11-27 12:46:59,413 | INFO     | ***************************************
[2025-11-27 07:47:31] 2025-11-27 12:46:59,413 | INFO     | 
[2025-11-27 07:47:31] 2025-11-27 12:46:59,420 | INFO     | architecture information:
[2025-11-27 07:47:31] 2025-11-27 12:46:59,420 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:47:31] 2025-11-27 12:46:59,603 | INFO     | cat /etc/os-release:
[2025-11-27 07:47:31] NAME="CentOS Linux"
[2025-11-27 07:47:31] VERSION="7 (Core)"
[2025-11-27 07:47:31] ID="centos"
[2025-11-27 07:47:31] ID_LIKE="rhel fedora"
[2025-11-27 07:47:31] VERSION_ID="7"
[2025-11-27 07:47:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:47:31] ANSI_COLOR="0;31"
[2025-11-27 07:47:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:47:31] HOME_URL="https://www.centos.org/"
[2025-11-27 07:47:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:47:31] 
[2025-11-27 07:47:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:47:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:47:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:47:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:47:31] 
[2025-11-27 07:47:31] 2025-11-27 12:46:59,604 | INFO     | ***************************************
[2025-11-27 07:47:31] 2025-11-27 12:47:00,118 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 07:47:31] 2025-11-27 12:47:00,216 | INFO     | sufficient remaining disk space (50271879168 B)
[2025-11-27 07:47:31] 2025-11-27 12:47:00,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:47:31] 2025-11-27 12:47:00,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:47:31] 2025-11-27 12:47:00,217 | INFO     | update_server=False
[2025-11-27 07:47:31] 2025-11-27 12:47:00,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:47:31] 2025-11-27 12:47:00,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 07:47:31] 2025-11-27 12:47:00,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 07:47:31] 2025-11-27 12:47:00,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:47:31] 2025-11-27 12:47:00,422 | INFO     | will abort loop
[2025-11-27 07:47:31] 2025-11-27 12:47:00,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:47:31] 2025-11-27 12:47:01,015 | INFO     | all payload control threads have been joined
[2025-11-27 07:47:31] 2025-11-27 12:47:01,016 | INFO     | all job control threads have been joined
[2025-11-27 07:47:31] 2025-11-27 12:47:01,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:47:31] 2025-11-27 12:47:01,116 | INFO     | all data control threads have been joined
[2025-11-27 07:47:31] 2025-11-27 12:47:01,223 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:47:31] 2025-11-27 12:47:01,381 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,427 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,532 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,627 | INFO     | [job] validate thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,628 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,888 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:01,922 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,021 | INFO     | [payload] control thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,025 | INFO     | [job] control thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,114 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,139 | INFO     | [data] control thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,286 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,440 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:02,704 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:05,333 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:47:31] 2025-11-27 12:47:09,435 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:47:31] 2025-11-27 12:47:10,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872009238336)>', '<ExcThread(monitor, started 139871381354240)>']
[2025-11-27 07:47:31] 2025-11-27 12:47:15,065 | INFO     | all workflow threads have been joined
[2025-11-27 07:47:31] 2025-11-27 12:47:15,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:47:31] 2025-11-27 12:47:15,065 | INFO     | traces error code: 0
[2025-11-27 07:47:31] 2025-11-27 12:47:15,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:47:31] 2025-11-27 12:47:29,459 | INFO     | PID=3560459 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:47:31] 2025-11-27 12:47:29,460 | INFO     | .. there are 40 such processes running
[2025-11-27 07:47:31] 2025-11-27 12:47:29,460 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:47:31] 2025-11-27 12:47:29,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:47:31] 2025-11-27 12:47:29,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:47:31] 2025-11-27 12:47:29,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:47:31] 2025-11-27 12:47:29,461 | INFO     | [monitor] control thread has ended
[2025-11-27 07:47:31] 2025-11-27 12:47:30,515 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:47:31] 2025-11-27 12:47:30,531 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:47:31] 2025-11-27 12:47:30,548 [wrapper] pilotpid: 3560459
[2025-11-27 07:47:31] 2025-11-27 12:47:30,572 [wrapper] Pilot exit status: 0
[2025-11-27 07:47:31] 2025-11-27 12:47:30,659 [wrapper] pandaids: 6896219219
[2025-11-27 07:47:31] 2025-11-27 12:47:31,037 [wrapper] cleanup supervisor_pilot 3363417 3560460
[2025-11-27 07:47:31] 2025-11-27 12:47:31,056 [wrapper] Test setup, not cleaning
[2025-11-27 07:47:31] 2025-11-27 12:47:31,071 [wrapper] apfmon messages muted
[2025-11-27 07:47:31] 2025-11-27 12:47:31,097 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:47:31] 2025-11-27 12:47:31,124 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:47:31]  *** Error codes and diagnostics ***
[2025-11-27 07:47:31]     "exeErrorCode": 0,
[2025-11-27 07:47:31]     "exeErrorDiag": "",
[2025-11-27 07:47:31]     "pilotErrorCode": 0,
[2025-11-27 07:47:31]     "pilotErrorDiag": "",
[2025-11-27 07:47:31]  *** Listing of results directory ***
[2025-11-27 07:47:31] total 1324376
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 07:47:31] -rwx------. 1 boincer umatlas     36292 Nov 24 14:46 runpilot2-wrapper.sh
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:46 queuedata.json
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:47:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:20 run_atlas
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:20 job.xml
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas 408751915 Nov 26 15:20 EVNT.47483658._002060.pool.root.1
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:20 start_atlas.sh
[2025-11-27 07:47:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:20 shared
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 15:20 input.tar.gz
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:20 boinc_lockfile
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 15:20 pandaJob.out
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas        57 Nov 26 15:20 setup.sh.local
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas    991538 Nov 26 15:21 agis_schedconf.cvmfs.json
[2025-11-27 07:47:31] drwx------. 5 boincer umatlas      4096 Nov 26 15:21 pilot3
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:20 boinc_task_state.xml
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas 923900681 Nov 27 07:44 HITS.47556161._000433.pool.root.1
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas      1057 Nov 27 07:46 memory_monitor_summary.json
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas   2137948 Nov 27 07:46 log.47556161._000433.job.log.tgz.1
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas      8621 Nov 27 07:46 heartbeat.json
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 07:47 init_data.xml
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:47 wrapper_checkpoint.txt
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas        95 Nov 27 07:47 pilot_heartbeat.json
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas       823 Nov 27 07:47 pilotlog.txt
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas   7658087 Nov 27 07:47 log.47556161._000433.job.log.1
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:47 boinc_mmap_file
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas       353 Nov 27 07:47 output.list
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:47 runtime_log
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas   9820160 Nov 27 07:47 result.tar.gz
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas       661 Nov 27 07:47 U53NDmugrh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhBJKDmQpCjyn.diag
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 07:47 runtime_log.err
[2025-11-27 07:47:31] -rw-r--r--. 1 boincer umatlas     21853 Nov 27 07:47 stderr.txt
[2025-11-27 07:47:31] HITS file was successfully produced:
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas 923900681 Nov 27 07:44 shared/HITS.pool.root.1
[2025-11-27 07:47:31]  *** Contents of shared directory: ***
[2025-11-27 07:47:31] total 1311612
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas 408751915 Nov 26 15:20 ATLAS.root_0
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:20 start_atlas.sh
[2025-11-27 07:47:31] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 15:20 input.tar.gz
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas 923900681 Nov 27 07:44 HITS.pool.root.1
[2025-11-27 07:47:31] -rw-------. 1 boincer umatlas   9820160 Nov 27 07:47 result.tar.gz
07:47:33 (3554203): run_atlas exited; CPU time 249487.581589
07:47:33 (3554203): called boinc_finish(0)

</stderr_txt>
]]>

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