Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:04:35 (27821): wrapper (7.7.26015): starting
01:04:35 (27821): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:04:35] Arguments: --nthreads 8
[2025-11-27 01:04:35] Threads: 8
[2025-11-27 01:04:35] Checking for CVMFS
[2025-11-27 01:04:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:04:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:04:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:04:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:04:36] 2.11.0.0 4380 66009 115292 153340 1 1 3958211 4096001 0 130560 1 9870848 99.776 4562643 523 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-27 01:04:36] CVMFS is ok
[2025-11-27 01:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:04:36] Further information can be found at the LHC@home message board.
[2025-11-27 01:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:04:36] Checking for apptainer binary...
[2025-11-27 01:04:36] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-27 01:04:36] apptainer is not installed, using version from CVMFS
[2025-11-27 01:04:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:04:36] WARNING: Environment variable TMPDIR already has value [/tmp/job_10927702/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node054
[2025-11-27 01:04:36] apptainer works
[2025-11-27 01:04:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:04:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:04:36] Starting ATLAS job with PandaID=6895356450
[2025-11-27 01:04:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10927702/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:29:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:29:31] 2025-11-27 04:28:56,070 | INFO     | stage-out finished correctly
[2025-11-27 05:29:31] 2025-11-27 04:28:56,071 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:29:31] 2025-11-27 04:28:56,121 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-27 05:29:31] 2025-11-27 04:28:56,169 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:29:31] 2025-11-27 04:28:56,169 | INFO     | job 6895356450 has state=finished
[2025-11-27 05:29:31] 2025-11-27 04:28:56,169 | INFO     | preparing for final server update for job 6895356450 in state='finished'
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | this job has now completed (state=finished)
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | log transfer has been attempted: DONE
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | job 6895356450 has finished - writing final server update
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 05:29:31] 2025-11-27 04:28:56,170 | INFO     | executing command: lscpu
[2025-11-27 05:29:31] 2025-11-27 04:28:56,202 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 05:29:31] 2025-11-27 04:28:57,901 | INFO     | time since job start (15855s) is within the limit (172800.0s)
[2025-11-27 05:29:31] 2025-11-27 04:28:58,073 | INFO     | monitor loop #1164: job 0:6895356450 is in state 'finished'
[2025-11-27 05:29:31] 2025-11-27 04:28:58,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,381 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:29:31] 2025-11-27 04:28:59,398 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2973.372328125
[2025-11-27 05:29:31] 2025-11-27 04:28:59,404 | INFO     | using path: /tmp/job_10927702/atlas/pilot/slots/0/PanDA_Pilot-6895356450/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,404 | INFO     | extracted standard info from prmon json
[2025-11-27 05:29:31] 2025-11-27 04:28:59,404 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:29:31] 2025-11-27 04:28:59,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:29:31] 2025-11-27 04:28:59,407 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:29:31] 2025-11-27 04:28:59,407 | INFO     | sum of square deviations: 5449944045.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | sum of deviations: 1807970392320.4998
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | mean x: 1764209800.5
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | mean y: 4294070.365384615
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | intersect: -585256592795.4292
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | chi2: 8.840253230947862
[2025-11-27 05:29:31] 2025-11-27 04:28:59,408 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,409 | INFO     | sum of deviations: 1840050003027.9998
[2025-11-27 05:29:31] 2025-11-27 04:28:59,409 | INFO     | mean x: 1764209648.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,409 | INFO     | mean y: 4309419.925490196
[2025-11-27 05:29:31] 2025-11-27 04:28:59,409 | INFO     | intersect: -631370908613.3551
[2025-11-27 05:29:31] 2025-11-27 04:28:59,409 | INFO     | chi2: 8.754104410053495
[2025-11-27 05:29:31] 2025-11-27 04:28:59,410 | INFO     | current chi2=8.754104410053495 (change=0.9745062572730202 %)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,410 | INFO     | right removable region: 254
[2025-11-27 05:29:31] 2025-11-27 04:28:59,410 | INFO     | sum of square deviations: 5141528960.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | sum of deviations: 1703730869921.0002
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | mean x: 1764209953.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | mean y: 4345434.247058824
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | intersect: -584595873942.5154
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | chi2: 7.305661169506538
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | current chi2=7.305661169506538 (change=17.35914143351732 %)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | left removable region: 10
[2025-11-27 05:29:31] 2025-11-27 04:28:59,411 | INFO     | sum of square deviations: 4504437945.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | sum of deviations: 1647766808796.0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | mean x: 1764209922.5
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | mean y: 4387287.713114754
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | intersect: -645360603758.7032
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | chi2: 6.611998026645435
[2025-11-27 05:29:31] 2025-11-27 04:28:59,412 | INFO     | current memory leak: 365.81 B/s (using 244 data points, chi2=6.61)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | could have reported an average CPU frequency of 3022 MHz (12 samples)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | ..............................
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . Timing measurements:
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . get job = 0 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . initial setup = 1 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . payload setup = 3 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . stage-in = 0 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . payload execution = 15831 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . stage-out = 1 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | . log creation = 0 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,413 | INFO     | ..............................
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | 
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | job summary report
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | --------------------------------------------------
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | PanDA job id: 6895356450
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | task id: 47556149
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | errors: (none)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | pilot state: finished 
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | transexitcode: 0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | exeerrorcode: 0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | exeerrordiag: 
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | exitcode: 0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | exitmsg: OK
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | cpuconsumptiontime: 119939 s
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | nevents: 1000
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | neventsw: 0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,462 | INFO     | pid: 12200
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | pgrp: 12200
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | corecount: 8
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | event service: False
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | sizes: {0: 2284389, 2: 2284651, 11: 2284679, 15838: 2317040, 15841: 2326120, 15844: 2326310}
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | --------------------------------------------------
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | 
[2025-11-27 05:29:31] 2025-11-27 04:28:59,463 | INFO     | executing command: ls -lF /tmp/job_10927702/atlas/pilot/slots/0
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:29:31] 2025-11-27 04:28:59,472 | INFO     | job 6895356450 has completed (purged errors)
[2025-11-27 05:29:31] 2025-11-27 04:28:59,473 | INFO     | overall cleanup function is called
[2025-11-27 05:29:31] 2025-11-27 04:29:00,480 | INFO     | --- collectZombieJob: --- 10, [12200]
[2025-11-27 05:29:31] 2025-11-27 04:29:00,480 | INFO     | zombie collector waiting for pid 12200
[2025-11-27 05:29:31] 2025-11-27 04:29:00,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:29:31] 2025-11-27 04:29:00,480 | INFO     | collected zombie processes
[2025-11-27 05:29:31] 2025-11-27 04:29:00,480 | INFO     | will attempt to kill all subprocesses of pid=12200
[2025-11-27 05:29:31] 2025-11-27 04:29:00,608 | INFO     | process IDs to be killed: [12200] (in reverse order)
[2025-11-27 05:29:31] 2025-11-27 04:29:00,656 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:29:31] 2025-11-27 04:29:00,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:29:31] 2025-11-27 04:29:00,660 | INFO     | did not find any defunct processes belonging to 12200
[2025-11-27 05:29:31] 2025-11-27 04:29:00,664 | INFO     | did not find any defunct processes belonging to 12200
[2025-11-27 05:29:31] 2025-11-27 04:29:00,665 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:29:31] 2025-11-27 04:29:00,665 | INFO     | ready for new job
[2025-11-27 05:29:31] 2025-11-27 04:29:00,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:29:31] 2025-11-27 04:29:00,666 | INFO     | ***************************************
[2025-11-27 05:29:31] 2025-11-27 04:29:00,666 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:29:31] 2025-11-27 04:29:00,666 | INFO     | ***************************************
[2025-11-27 05:29:31] 2025-11-27 04:29:00,666 | INFO     | 
[2025-11-27 05:29:31] 2025-11-27 04:29:00,680 | INFO     | architecture information:
[2025-11-27 05:29:31] 2025-11-27 04:29:00,680 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:29:31] 2025-11-27 04:29:00,687 | INFO     | cat /etc/os-release:
[2025-11-27 05:29:31] NAME="CentOS Linux"
[2025-11-27 05:29:31] VERSION="7 (Core)"
[2025-11-27 05:29:31] ID="centos"
[2025-11-27 05:29:31] ID_LIKE="rhel fedora"
[2025-11-27 05:29:31] VERSION_ID="7"
[2025-11-27 05:29:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:29:31] ANSI_COLOR="0;31"
[2025-11-27 05:29:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:29:31] HOME_URL="https://www.centos.org/"
[2025-11-27 05:29:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:29:31] 
[2025-11-27 05:29:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:29:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:29:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:29:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:29:31] 
[2025-11-27 05:29:31] 2025-11-27 04:29:00,687 | INFO     | ***************************************
[2025-11-27 05:29:31] 2025-11-27 04:29:01,190 | INFO     | executing command: df -mP /tmp/job_10927702/atlas/pilot/slots/0
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | INFO     | sufficient remaining disk space (213577105408 B)
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | INFO     | update_server=False
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:29:31] 2025-11-27 04:29:01,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:29:31] 2025-11-27 04:29:01,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:29:31] 2025-11-27 04:29:01,580 | INFO     | aborting loop
[2025-11-27 05:29:31] 2025-11-27 04:29:01,628 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:29:31] 2025-11-27 04:29:02,171 | INFO     | all data control threads have been joined
[2025-11-27 05:29:31] 2025-11-27 04:29:02,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:29:31] 2025-11-27 04:29:02,203 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,203 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,456 | INFO     | all payload control threads have been joined
[2025-11-27 05:29:31] 2025-11-27 04:29:02,465 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,542 | INFO     | all job control threads have been joined
[2025-11-27 05:29:31] 2025-11-27 04:29:02,575 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,586 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,655 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:02,959 | INFO     | [job] validate thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,176 | INFO     | [data] control thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,210 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,329 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,461 | INFO     | [payload] control thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,531 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,547 | INFO     | [job] control thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:03,633 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:06,176 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:08,836 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:29:31] 2025-11-27 04:29:11,355 | INFO     | job.realtimelogging is not enabled
[2025-11-27 05:29:31] 2025-11-27 04:29:12,360 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:29:31] 2025-11-27 04:29:13,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-27 05:29:31] 2025-11-27 04:29:18,480 | INFO     | all workflow threads have been joined
[2025-11-27 05:29:31] 2025-11-27 04:29:18,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:29:31] 2025-11-27 04:29:18,480 | INFO     | traces error code: 0
[2025-11-27 05:29:31] 2025-11-27 04:29:18,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | INFO     | PID=31622 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | INFO     | .. there are 8 such processes running
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:29:31] 2025-11-27 04:29:31,116 | INFO     | [monitor] control thread has ended
[2025-11-27 05:29:31] 2025-11-27 04:29:31,172 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:29:31] 2025-11-27 04:29:31,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:29:31] 2025-11-27 04:29:31,174 [wrapper] pilotpid: 31622
[2025-11-27 05:29:31] 2025-11-27 04:29:31,174 [wrapper] Pilot exit status: 0
[2025-11-27 05:29:31] 2025-11-27 04:29:31,179 [wrapper] pandaids: 6895356450
[2025-11-27 05:29:31] 2025-11-27 04:29:31,205 [wrapper] cleanup supervisor_pilot 16349 31623
[2025-11-27 05:29:31] 2025-11-27 04:29:31,206 [wrapper] Test setup, not cleaning
[2025-11-27 05:29:31] 2025-11-27 04:29:31,208 [wrapper] apfmon messages muted
[2025-11-27 05:29:31] 2025-11-27 04:29:31,209 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:29:31] 2025-11-27 04:29:31,210 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:29:31]  *** Error codes and diagnostics ***
[2025-11-27 05:29:31]     "exeErrorCode": 0,
[2025-11-27 05:29:31]     "exeErrorDiag": "",
[2025-11-27 05:29:31]     "pilotErrorCode": 0,
[2025-11-27 05:29:31]     "pilotErrorDiag": "",
[2025-11-27 05:29:31]  *** Listing of results directory ***
[2025-11-27 05:29:31] total 1290960
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user    576529 Nov 23 12:12 pilot3.tar.gz
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      5112 Nov 23 12:18 queuedata.json
[2025-11-27 05:29:31] -rwx------ 1 mf493845 unix-user     36292 Nov 23 12:18 runpilot2-wrapper.sh
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       100 Nov 26 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:29:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 23:20 run_atlas
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       105 Nov 26 23:20 job.xml
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:04 start_atlas.sh
[2025-11-27 05:29:31] drwxrwx--x 2 mf493845 unix-user       100 Nov 27 01:04 shared
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user    590099 Nov 27 01:04 input.tar.gz
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      6391 Nov 27 01:04 init_data.xml
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user 407717336 Nov 27 01:04 EVNT.47483658._001155.pool.root.1
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user         0 Nov 27 01:04 boinc_setup_complete
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      8192 Nov 27 01:04 boinc_mmap_file
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user         0 Nov 27 01:04 boinc_lockfile
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      2784 Nov 27 01:04 pandaJob.out
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user    991538 Nov 27 01:04 agis_schedconf.cvmfs.json
[2025-11-27 05:29:31] drwx------ 5 mf493845 unix-user       440 Nov 27 01:04 pilot3
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user 902637714 Nov 27 05:28 HITS.47556149._001412.pool.root.1
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user        95 Nov 27 05:28 pilot_heartbeat.json
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      1024 Nov 27 05:28 memory_monitor_summary.json
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user   1516240 Nov 27 05:28 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user   1559458 Nov 27 05:28 log.47556149._001412.job.log.tgz.1
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      8589 Nov 27 05:28 heartbeat.json
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       820 Nov 27 05:29 pilotlog.txt
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user   2291544 Nov 27 05:29 log.47556149._001412.job.log.1
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       353 Nov 27 05:29 output.list
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       620 Nov 27 05:29 runtime_log
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:29 result.tar.gz
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user       651 Nov 27 05:29 UwFMDm0HNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVpKKDmxhvbFo.diag
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user      9221 Nov 27 05:29 runtime_log.err
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user     22234 Nov 27 05:29 stderr.txt
[2025-11-27 05:29:31] HITS file was successfully produced:
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user 902637714 Nov 27 05:28 shared/HITS.pool.root.1
[2025-11-27 05:29:31]  *** Contents of shared directory: ***
[2025-11-27 05:29:31] total 1284024
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 27 01:04 start_atlas.sh
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user    590099 Nov 27 01:04 input.tar.gz
[2025-11-27 05:29:31] -rw-r--r-- 2 mf493845 unix-user 407717336 Nov 27 01:04 ATLAS.root_0
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user 902637714 Nov 27 05:28 HITS.pool.root.1
[2025-11-27 05:29:31] -rw------- 1 mf493845 unix-user   3870720 Nov 27 05:29 result.tar.gz
05:29:32 (27821): run_atlas exited; CPU time 120171.064640
05:29:32 (27821): called boinc_finish(0)

</stderr_txt>
]]>

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