Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 15:10:25 (27688): vboxwrapper version 26210
2025-11-26 15:10:25 (27688): BOINC client version: 8.2.7
2025-11-26 15:10:26 (27688): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-26 15:10:26 (27688): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 15:10:26 (27688): Create VM. (boinc_2b303acd30cc86d8, slot#0)
2025-11-26 15:10:27 (27688): Setting Memory Size for VM. (4300MB)
2025-11-26 15:10:27 (27688): Setting CPU Count for VM. (3)
2025-11-26 15:10:27 (27688): Setting Chipset Options for VM.
2025-11-26 15:10:28 (27688): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 15:10:28 (27688): Setting Boot Options for VM.
2025-11-26 15:10:28 (27688): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 15:10:29 (27688): Enabling VM Network Access.
2025-11-26 15:10:29 (27688): Disabling USB Support for VM.
2025-11-26 15:10:29 (27688): Disabling COM Port Support for VM.
2025-11-26 15:10:30 (27688): Disabling LPT Port Support for VM.
2025-11-26 15:10:30 (27688): Disabling Audio Support for VM.
2025-11-26 15:10:30 (27688): Disabling Clipboard Support for VM.
2025-11-26 15:10:30 (27688): Disabling Drag and Drop Support for VM.
2025-11-26 15:10:31 (27688): Adding storage controller(s) to VM.
2025-11-26 15:10:31 (27688): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 15:10:31 (27688): Adding VirtualBox Guest Additions to VM.
2025-11-26 15:10:32 (27688): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 15:10:32 (27688): forwarding host port 60797 to guest port 80
2025-11-26 15:10:32 (27688): Enabling remote desktop for VM.
2025-11-26 15:10:33 (27688): Enabling shared directory for VM.
2025-11-26 15:10:33 (27688): Starting VM using VBoxManage interface. (boinc_2b303acd30cc86d8, slot#0)
2025-11-26 15:10:38 (27688): Successfully started VM. (PID = '17800')
2025-11-26 15:10:38 (27688): Reporting VM Process ID to BOINC.
2025-11-26 15:10:38 (27688): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-26 15:10:38 (27688): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 15:10:38 (27688): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 15:10:38 (27688): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 15:10:38 (27688): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 15:10:38 (27688): Detected: Web Application Enabled (http://localhost:60797)
2025-11-26 15:10:38 (27688): Detected: Remote Desktop Enabled (localhost:60798)
2025-11-26 15:10:38 (27688): Preference change detected
2025-11-26 15:10:38 (27688): Setting CPU throttle for VM. (100%)
2025-11-26 15:10:38 (27688): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 15:10:40 (27688): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 15:10:40 (27688): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 15:10:42 (27688): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 15:10:42 (27688): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 15:10:42 (27688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 15:10:47 (27688): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 15:10:47 (27688): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 15:10:50 (27688): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000112 main     Log opened 2025-11-26T15:10:48.730635000Z
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000192 main     OS Product: Linux
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000212 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000227 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000243 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000243 main     Process ID: 1288
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000244 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 15:10:50 (27688): Guest Log: 00:00:00.000731 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 15:10:50 (27688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 15:10:50 (27688): Guest Log: [INFO] Mounting shared directory
2025-11-26 15:10:50 (27688): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 15:11:00 (27688): Guest Log: 00:00:10.013956 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 393 976 000ns (GuestNow=1 764 187 860 126 209 000 ns GuestLast=1 764 169 848 732 233 000 ns fSetTimeLastLoop=true )
2025-11-26 15:11:13 (27688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 15:11:13 (27688): Guest Log: [INFO] Detected branch: prod
2025-11-26 15:11:13 (27688): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 15:11:13 (27688): Guest Log: Copying input files
2025-11-26 15:11:14 (27688): Guest Log: Copied input files into RunAtlas.
2025-11-26 15:11:14 (27688): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 15:11:14 (27688): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 15:11:14 (27688): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 15:11:14 (27688): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 15:11:22 (27688): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 15:11:22 (27688): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 15:11:22 (27688): Guest Log: 2.6.3.0 1585 0 30164 153333 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 15:11:22 (27688): Guest Log: copied the webapp to /var/www
2025-11-26 15:11:22 (27688): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-26 15:11:22 (27688): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-26 15:11:22 (27688): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 15:11:23 (27688): Guest Log:  *** Starting ATLAS job. (PandaID=6895348331 taskID=47556137) ***
2025-11-26 16:50:40 (27688): Status Report: Elapsed Time: '6000.000000'
2025-11-26 16:50:40 (27688): Status Report: CPU Time: '16780.265625'
2025-11-26 18:30:42 (27688): Status Report: Elapsed Time: '12000.000000'
2025-11-26 18:30:42 (27688): Status Report: CPU Time: '34689.062500'
2025-11-26 20:10:45 (27688): Status Report: Elapsed Time: '18000.000000'
2025-11-26 20:10:45 (27688): Status Report: CPU Time: '52596.906250'
2025-11-26 21:50:47 (27688): Status Report: Elapsed Time: '24000.000000'
2025-11-26 21:50:47 (27688): Status Report: CPU Time: '70506.109375'
2025-11-26 23:30:49 (27688): Status Report: Elapsed Time: '30000.000000'
2025-11-26 23:30:49 (27688): Status Report: CPU Time: '88418.234375'
2025-11-27 01:10:51 (27688): Status Report: Elapsed Time: '36000.000000'
2025-11-27 01:10:51 (27688): Status Report: CPU Time: '106329.984375'
2025-11-27 02:50:54 (27688): Status Report: Elapsed Time: '42000.000000'
2025-11-27 02:50:54 (27688): Status Report: CPU Time: '124244.796875'
2025-11-27 04:30:56 (27688): Status Report: Elapsed Time: '48000.000000'
2025-11-27 04:30:56 (27688): Status Report: CPU Time: '142155.437500'
2025-11-27 06:10:58 (27688): Status Report: Elapsed Time: '54000.000000'
2025-11-27 06:10:58 (27688): Status Report: CPU Time: '160068.375000'
2025-11-27 07:51:00 (27688): Status Report: Elapsed Time: '60000.000000'
2025-11-27 07:51:00 (27688): Status Report: CPU Time: '177982.421875'
2025-11-27 09:31:02 (27688): Status Report: Elapsed Time: '66000.000000'
2025-11-27 09:31:02 (27688): Status Report: CPU Time: '195896.406250'
2025-11-27 11:00:00 (27688): Guest Log:  *** Job finished ***
2025-11-27 11:00:00 (27688): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:41,334 | INFO     | all workflow threads have been joined
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:41,334 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:41,334 | INFO     | traces error code: 0
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:41,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,863 | INFO     | PID=5971 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,863 | INFO     | found 0 job(s) in 20 queues
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,864 | INFO     | [monitor] control thread has ended
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,991 [wrapper] ==== pilot stdout END ====
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,993 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,996 [wrapper] pilotpid: 5971
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 15:59:59,999 [wrapper] Pilot exit status: 0
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,008 [wrapper] pandaids: 6895348331
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,026 [wrapper] cleanup supervisor_pilot 11650 5972
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,029 [wrapper] Test setup, not cleaning
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,031 [wrapper] apfmon messages muted
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,034 [wrapper] ==== wrapper stdout END ====
2025-11-27 11:00:00 (27688): Guest Log: 2025-11-27 16:00:00,037 [wrapper] ==== wrapper stderr END ====
2025-11-27 11:00:00 (27688): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 11:00:00 (27688): Guest Log:     "exeErrorCode": 0,
2025-11-27 11:00:00 (27688): Guest Log:     "exeErrorDiag": "",
2025-11-27 11:00:00 (27688): Guest Log:     "pilotErrorCode": 0,
2025-11-27 11:00:00 (27688): Guest Log:     "pilotErrorDiag": "",
2025-11-27 11:00:00 (27688): Guest Log:  *** Listing of results directory ***
2025-11-27 11:00:00 (27688): Guest Log: total 925348
2025-11-27 11:00:00 (27688): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 19:25 pilot3.tar.gz
2025-11-27 11:00:00 (27688): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 19:39 runpilot2-wrapper.sh
2025-11-27 11:00:00 (27688): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 19:39 queuedata.json
2025-11-27 11:00:00 (27688): Guest Log: -rwxr-xr-x. 1 atlas atlas     10550 Nov 26 20:11 init_data.xml
2025-11-27 11:00:00 (27688): Guest Log: -rwxr-xr-x. 1 atlas atlas    590097 Nov 26 20:11 input.tar.gz
2025-11-27 11:00:00 (27688): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 20:11 start_atlas.sh
2025-11-27 11:00:00 (27688): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 20:11 EVNT.47483658._000477.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 11:00:00 (27688): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 20:11 pandaJob.out
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas    991522 Nov 26 20:12 agis_schedconf.cvmfs.json
2025-11-27 11:00:00 (27688): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 20:12 pilot3
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas 921199703 Nov 27 15:58 HITS.47556137._004722.pool.root.1
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 27 15:59 memory_monitor_summary.json
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 15:59 agis_ddmendpoints.agis.ALL.json
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas   1691222 Nov 27 15:59 log.47556137._004722.job.log.tgz.1
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas      8659 Nov 27 15:59 heartbeat.json
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 15:59 pilot_heartbeat.json
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 15:59 pilotlog.txt
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas   9566737 Nov 27 16:00 log.47556137._004722.job.log.1
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 16:00 output.list
2025-11-27 11:00:00 (27688): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 16:00 runtime_log
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas  11274240 Nov 27 16:00 result.tar.gz
2025-11-27 11:00:00 (27688): Guest Log: -rw-r--r--. 1 atlas atlas      8738 Nov 27 16:00 runtime_log.err
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas       659 Nov 27 16:00 8yCLDmid8g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzLKKDmjbffDm.diag
2025-11-27 11:00:00 (27688): Guest Log: Looking for outputfile HITS.47556137._004722.pool.root.1
2025-11-27 11:00:00 (27688): Guest Log: HITS file was successfully produced
2025-11-27 11:00:00 (27688): Guest Log: -rw-------. 1 atlas atlas 921199703 Nov 27 15:58 /home/atlas/RunAtlas/HITS.47556137._004722.pool.root.1
2025-11-27 11:00:02 (27688): Guest Log: Successfully finished the ATLAS job!
2025-11-27 11:00:02 (27688): Guest Log: Copying the results back to the shared directory!
2025-11-27 11:00:02 (27688): Guest Log:  *** Contents of shared directory: ***
2025-11-27 11:00:02 (27688): Guest Log: total 1311276
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root 409643552 Nov 26 20:10 ATLAS.root_0
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root 921199703 Nov 27 16:00 HITS.pool.root.1
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root     10550 Nov 26 20:10 init_data.xml
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root    590097 Nov 26 20:08 input.tar.gz
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root  11274240 Nov 27  2025 result.tar.gz
2025-11-27 11:00:02 (27688): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 20:08 start_atlas.sh
2025-11-27 11:00:02 (27688): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 11:00:02 (27688): VM Completion File Detected.
2025-11-27 11:00:02 (27688): Powering off VM.
2025-11-27 11:00:03 (27688): Successfully stopped VM.
2025-11-27 11:00:03 (27688): Deregistering VM. (boinc_2b303acd30cc86d8, slot#0)
2025-11-27 11:00:03 (27688): Removing network bandwidth throttle group from VM.
2025-11-27 11:00:03 (27688): Removing VM from VirtualBox.
2025-11-27 11:00:09 (27688): called boinc_finish(0)

</stderr_txt>
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