Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:22:58 (3769203): wrapper (7.7.26015): starting
15:22:58 (3769203): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:22:58] Arguments: --nthreads 8
[2025-11-26 15:22:58] Threads: 8
[2025-11-26 15:22:58] Checking for CVMFS
[2025-11-26 15:22:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:22:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:22:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:23:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:23:00] 2.13.3.0 10079 28827 401364 153334 1 367 31102829 32935937 64415 16776704 0 319290778 99.795 163794531 29121 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:23:00] CVMFS is ok
[2025-11-26 15:23:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:23:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:23:00] Further information can be found at the LHC@home message board.
[2025-11-26 15:23:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:23:00] Checking for apptainer binary...
[2025-11-26 15:23:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:23:00] Running /usr/bin/apptainer --version
[2025-11-26 15:23:00] apptainer version 1.4.4-1.el9
[2025-11-26 15:23:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:23:01] lc-12-33.aglt2.org
[2025-11-26 15:23:01] apptainer works
[2025-11-26 15:23:01] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:23:01] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:23:01] Starting ATLAS job with PandaID=6897864778
[2025-11-26 15:23:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:34:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:34:24] 2025-11-27 18:33:35,449 | INFO     | time since job start (79790s) is within the limit (172800.0s)
[2025-11-27 13:34:24] 2025-11-27 18:33:36,547 | INFO     | monitor loop #4673: job 0:6897864778 is in state 'finished'
[2025-11-27 13:34:24] 2025-11-27 18:33:36,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:24] 2025-11-27 18:33:37,468 | INFO     | time since job start (79792s) is within the limit (172800.0s)
[2025-11-27 13:34:24] 2025-11-27 18:33:39,076 | INFO     | monitor loop #4674: job 0:6897864778 is in state 'finished'
[2025-11-27 13:34:24] 2025-11-27 18:33:39,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:24] 2025-11-27 18:33:39,477 | INFO     | time since job start (79794s) is within the limit (172800.0s)
[2025-11-27 13:34:24] 2025-11-27 18:33:41,498 | INFO     | time since job start (79796s) is within the limit (172800.0s)
[2025-11-27 13:34:24] 2025-11-27 18:33:41,601 | INFO     | monitor loop #4675: job 0:6897864778 is in state 'finished'
[2025-11-27 13:34:24] 2025-11-27 18:33:41,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:24] 2025-11-27 18:33:44,195 | INFO     | monitor loop #4676: job 0:6897864778 is in state 'finished'
[2025-11-27 13:34:24] 2025-11-27 18:33:44,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:24] 2025-11-27 18:33:45,706 | INFO     | PID=3782353 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:34:24] 2025-11-27 18:33:45,706 | INFO     | .. there are 97 such processes running
[2025-11-27 13:34:24] 2025-11-27 18:33:46,707 | INFO     | time since job start (79801s) is within the limit (172800.0s)
[2025-11-27 13:34:24] 2025-11-27 18:33:46,712 | INFO     | monitor loop #4677: job 0:6897864778 is in state 'finished'
[2025-11-27 13:34:24] 2025-11-27 18:33:46,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:24] 2025-11-27 18:33:46,929 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 13:34:24] 2025-11-27 18:33:46,963 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2766.8340208333325
[2025-11-27 13:34:24] 2025-11-27 18:33:46,980 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897864778/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:34:24] 2025-11-27 18:33:46,981 | INFO     | extracted standard info from prmon json
[2025-11-27 13:34:24] 2025-11-27 18:33:46,981 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:34:24] 2025-11-27 18:33:46,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:34:24] 2025-11-27 18:33:47,003 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:34:24] 2025-11-27 18:33:47,005 | INFO     | sum of square deviations: 690721083883.5005
[2025-11-27 13:34:24] 2025-11-27 18:33:47,060 | INFO     | sum of deviations: 3699350459262.644
[2025-11-27 13:34:24] 2025-11-27 18:33:47,060 | INFO     | mean x: 1764228521.6140888
[2025-11-27 13:34:24] 2025-11-27 18:33:47,060 | INFO     | mean y: 2913327.247320061
[2025-11-27 13:34:24] 2025-11-27 18:33:47,060 | INFO     | intersect: -9445907251.650946
[2025-11-27 13:34:24] 2025-11-27 18:33:47,062 | INFO     | chi2: 15.02210692276381
[2025-11-27 13:34:24] 2025-11-27 18:33:47,063 | INFO     | sum of square deviations: 682818523659.7716
[2025-11-27 13:34:24] 2025-11-27 18:33:47,096 | INFO     | sum of deviations: 4126588479661.36
[2025-11-27 13:34:24] 2025-11-27 18:33:47,096 | INFO     | mean x: 1764228369.1183705
[2025-11-27 13:34:24] 2025-11-27 18:33:47,097 | INFO     | mean y: 2921570.2444273634
[2025-11-27 13:34:24] 2025-11-27 18:33:47,097 | INFO     | intersect: -10659127292.27757
[2025-11-27 13:34:24] 2025-11-27 18:33:47,098 | INFO     | chi2: 11.993578052407342
[2025-11-27 13:34:24] 2025-11-27 18:33:47,098 | INFO     | current chi2=11.993578052407342 (change=20.160480057342518 %)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,098 | INFO     | right removable region: 1300
[2025-11-27 13:34:24] 2025-11-27 18:33:47,100 | INFO     | sum of square deviations: 682817636109.7706
[2025-11-27 13:34:24] 2025-11-27 18:33:47,209 | INFO     | sum of deviations: 3211516646069.635
[2025-11-27 13:34:24] 2025-11-27 18:33:47,210 | INFO     | mean x: 1764228674.1183705
[2025-11-27 13:34:24] 2025-11-27 18:33:47,210 | INFO     | mean y: 2922738.7555726366
[2025-11-27 13:34:24] 2025-11-27 18:33:47,210 | INFO     | intersect: -8294826842.940438
[2025-11-27 13:34:24] 2025-11-27 18:33:47,235 | INFO     | chi2: 11.564165715454836
[2025-11-27 13:34:24] 2025-11-27 18:33:47,236 | INFO     | current chi2=11.564165715454836 (change=23.019016074695678 %)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,236 | INFO     | left removable region: 10
[2025-11-27 13:34:24] 2025-11-27 18:33:47,237 | INFO     | sum of square deviations: 665643793543.3958
[2025-11-27 13:34:24] 2025-11-27 18:33:47,351 | INFO     | sum of deviations: 3370239454837.929
[2025-11-27 13:34:24] 2025-11-27 18:33:47,351 | INFO     | mean x: 1764228643.627907
[2025-11-27 13:34:24] 2025-11-27 18:33:47,352 | INFO     | mean y: 2939597.1852713176
[2025-11-27 13:34:24] 2025-11-27 18:33:47,352 | INFO     | intersect: -8929575119.820564
[2025-11-27 13:34:24] 2025-11-27 18:33:47,353 | INFO     | chi2: 6.246499664734153
[2025-11-27 13:34:24] 2025-11-27 18:33:47,353 | INFO     | current memory leak: 5.06 B/s (using 1290 data points, chi2=6.25)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | could have reported an average CPU frequency of 2771 MHz (47 samples)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | ..............................
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . Timing measurements:
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . get job = 0 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . initial setup = 3 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . payload setup = 27 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . stage-in = 0 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . payload execution = 79680 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . stage-out = 9 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,355 | INFO     | . log creation = 2 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,356 | INFO     | ..............................
[2025-11-27 13:34:24] 2025-11-27 18:33:47,473 | INFO     | 
[2025-11-27 13:34:24] 2025-11-27 18:33:47,473 | INFO     | job summary report
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | --------------------------------------------------
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | PanDA job id: 6897864778
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | task id: 47556161
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | errors: (none)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | pilot state: finished 
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | transexitcode: 0
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | exeerrorcode: 0
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | exeerrordiag: 
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | exitcode: 0
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | exitmsg: OK
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | cpuconsumptiontime: 261058 s
[2025-11-27 13:34:24] 2025-11-27 18:33:47,474 | INFO     | nevents: 1000
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | neventsw: 0
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | pid: 3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | pgrp: 3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | corecount: 8
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | event service: False
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | sizes: {0: 2283437, 1: 2284293, 2: 2284293, 12: 2284321, 22: 2284611, 23: 2284639, 79712: 2345850, 79713: 2345849, 79724: 2354899, 79728: 2354955, 79760: 2355201}
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | --------------------------------------------------
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | 
[2025-11-27 13:34:24] 2025-11-27 18:33:47,475 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 13:34:24] 2025-11-27 18:33:47,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:34:24] 2025-11-27 18:33:47,531 | INFO     | job 6897864778 has completed (purged errors)
[2025-11-27 13:34:24] 2025-11-27 18:33:47,531 | INFO     | overall cleanup function is called
[2025-11-27 13:34:24] 2025-11-27 18:33:48,567 | INFO     | --- collectZombieJob: --- 10, [3804080]
[2025-11-27 13:34:24] 2025-11-27 18:33:48,567 | INFO     | zombie collector waiting for pid 3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:48,568 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:34:24] 2025-11-27 18:33:48,568 | INFO     | collected zombie processes
[2025-11-27 13:34:24] 2025-11-27 18:33:48,568 | INFO     | will attempt to kill all subprocesses of pid=3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:51,707 | INFO     | process IDs to be killed: [3804080] (in reverse order)
[2025-11-27 13:34:24] 2025-11-27 18:33:52,058 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:34:24] 2025-11-27 18:33:52,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:34:24] 2025-11-27 18:33:52,088 | INFO     | did not find any defunct processes belonging to 3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:52,117 | INFO     | did not find any defunct processes belonging to 3804080
[2025-11-27 13:34:24] 2025-11-27 18:33:52,118 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:34:24] 2025-11-27 18:33:52,118 | INFO     | ready for new job
[2025-11-27 13:34:24] 2025-11-27 18:33:52,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:34:24] 2025-11-27 18:33:52,124 | INFO     | ***************************************
[2025-11-27 13:34:24] 2025-11-27 18:33:52,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:34:24] 2025-11-27 18:33:52,124 | INFO     | ***************************************
[2025-11-27 13:34:24] 2025-11-27 18:33:52,125 | INFO     | 
[2025-11-27 13:34:24] 2025-11-27 18:33:52,129 | INFO     | architecture information:
[2025-11-27 13:34:24] 2025-11-27 18:33:52,136 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:34:24] 2025-11-27 18:33:52,231 | INFO     | cat /etc/os-release:
[2025-11-27 13:34:24] NAME="CentOS Linux"
[2025-11-27 13:34:24] VERSION="7 (Core)"
[2025-11-27 13:34:24] ID="centos"
[2025-11-27 13:34:24] ID_LIKE="rhel fedora"
[2025-11-27 13:34:24] VERSION_ID="7"
[2025-11-27 13:34:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:34:24] ANSI_COLOR="0;31"
[2025-11-27 13:34:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:34:24] HOME_URL="https://www.centos.org/"
[2025-11-27 13:34:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:34:24] 
[2025-11-27 13:34:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:34:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:34:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:34:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:34:24] 
[2025-11-27 13:34:24] 2025-11-27 18:33:52,232 | INFO     | ***************************************
[2025-11-27 13:34:24] 2025-11-27 18:33:52,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 13:34:24] 2025-11-27 18:33:52,803 | INFO     | sufficient remaining disk space (67011346432 B)
[2025-11-27 13:34:24] 2025-11-27 18:33:52,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:34:24] 2025-11-27 18:33:52,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:34:24] 2025-11-27 18:33:52,804 | INFO     | update_server=False
[2025-11-27 13:34:24] 2025-11-27 18:33:52,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:34:24] 2025-11-27 18:33:52,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:34:24] 2025-11-27 18:33:52,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:34:24] 2025-11-27 18:33:52,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:34:24] 2025-11-27 18:33:52,808 | INFO     | aborting loop
[2025-11-27 13:34:24] 2025-11-27 18:33:52,877 | INFO     | all data control threads have been joined
[2025-11-27 13:34:24] 2025-11-27 18:33:53,002 | INFO     | all job control threads have been joined
[2025-11-27 13:34:24] 2025-11-27 18:33:53,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:34:24] 2025-11-27 18:33:53,817 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:53,830 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:53,831 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:53,883 | INFO     | [data] control thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,008 | INFO     | [job] control thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,056 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,326 | INFO     | all payload control threads have been joined
[2025-11-27 13:34:24] 2025-11-27 18:33:54,803 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,811 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,964 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,969 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:54,993 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:55,037 | INFO     | [job] validate thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:55,347 | INFO     | [payload] control thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:33:57,330 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:34:24] 2025-11-27 18:34:07,120 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:34:24] 2025-11-27 18:34:07,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923401205568)>', '<ExcThread(monitor, started 139922744780544)>']
[2025-11-27 13:34:24] 2025-11-27 18:34:12,507 | INFO     | all workflow threads have been joined
[2025-11-27 13:34:24] 2025-11-27 18:34:12,507 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:34:24] 2025-11-27 18:34:12,529 | INFO     | traces error code: 0
[2025-11-27 13:34:24] 2025-11-27 18:34:12,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:34:24] 2025-11-27 18:34:22,961 | INFO     | PID=3782353 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:34:24] 2025-11-27 18:34:22,962 | INFO     | .. there are 97 such processes running
[2025-11-27 13:34:24] 2025-11-27 18:34:22,963 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:34:24] 2025-11-27 18:34:22,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:34:24] 2025-11-27 18:34:22,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:34:24] 2025-11-27 18:34:22,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:34:24] 2025-11-27 18:34:22,963 | INFO     | [monitor] control thread has ended
[2025-11-27 13:34:24] 2025-11-27 18:34:23,240 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:34:24] 2025-11-27 18:34:23,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:34:24] 2025-11-27 18:34:23,272 [wrapper] pilotpid: 3782353
[2025-11-27 13:34:24] 2025-11-27 18:34:23,285 [wrapper] Pilot exit status: 0
[2025-11-27 13:34:24] 2025-11-27 18:34:23,341 [wrapper] pandaids: 6897864778
[2025-11-27 13:34:24] 2025-11-27 18:34:23,918 [wrapper] cleanup supervisor_pilot  670686 3782354
[2025-11-27 13:34:24] 2025-11-27 18:34:23,930 [wrapper] Test setup, not cleaning
[2025-11-27 13:34:24] 2025-11-27 18:34:23,956 [wrapper] apfmon messages muted
[2025-11-27 13:34:24] 2025-11-27 18:34:23,964 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:34:24] 2025-11-27 18:34:23,967 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:34:24]  *** Error codes and diagnostics ***
[2025-11-27 13:34:24]     "exeErrorCode": 0,
[2025-11-27 13:34:24]     "exeErrorDiag": "",
[2025-11-27 13:34:24]     "pilotErrorCode": 0,
[2025-11-27 13:34:24]     "pilotErrorDiag": "",
[2025-11-27 13:34:24]  *** Listing of results directory ***
[2025-11-27 13:34:24] total 1331816
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 13:34:24] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:34:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:22 run_atlas
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:22 job.xml
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas 410826014 Nov 26 15:22 EVNT.47483658._002343.pool.root.1
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:22 start_atlas.sh
[2025-11-27 13:34:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:22 shared
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas    590113 Nov 26 15:22 input.tar.gz
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:22 boinc_lockfile
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 15:23 pandaJob.out
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas        57 Nov 26 15:23 setup.sh.local
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas    991538 Nov 26 15:23 agis_schedconf.cvmfs.json
[2025-11-27 13:34:24] drwx------. 5 boincer umatlas      4096 Nov 26 15:23 pilot3
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:10 boinc_task_state.xml
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 13:28 init_data.xml
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas 924474486 Nov 27 13:31 HITS.47556161._003259.pool.root.1
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas      1060 Nov 27 13:32 memory_monitor_summary.json
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas   2365849 Nov 27 13:33 log.47556161._003259.job.log.tgz.1
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas      8622 Nov 27 13:33 heartbeat.json
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:34 boinc_mmap_file
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:34 wrapper_checkpoint.txt
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas        95 Nov 27 13:34 pilot_heartbeat.json
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas       823 Nov 27 13:34 pilotlog.txt
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas   9915401 Nov 27 13:34 log.47556161._003259.job.log.1
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas       353 Nov 27 13:34 output.list
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:34 runtime_log
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas  12298240 Nov 27 13:34 result.tar.gz
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 13:34 runtime_log.err
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas       660 Nov 27 13:34 h0eLDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxjJKDmjrHHVo.diag
[2025-11-27 13:34:24] -rw-r--r--. 1 boincer umatlas     21894 Nov 27 13:34 stderr.txt
[2025-11-27 13:34:24] HITS file was successfully produced:
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas 924474486 Nov 27 13:31 shared/HITS.pool.root.1
[2025-11-27 13:34:24]  *** Contents of shared directory: ***
[2025-11-27 13:34:24] total 1316624
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas 410826014 Nov 26 15:22 ATLAS.root_0
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:22 start_atlas.sh
[2025-11-27 13:34:24] -rw-r--r--. 2 boincer umatlas    590113 Nov 26 15:22 input.tar.gz
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas 924474486 Nov 27 13:31 HITS.pool.root.1
[2025-11-27 13:34:24] -rw-------. 1 boincer umatlas  12298240 Nov 27 13:34 result.tar.gz
13:34:26 (3769203): run_atlas exited; CPU time 265585.782828
13:34:26 (3769203): called boinc_finish(0)

</stderr_txt>
]]>

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