Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:42 (8448): wrapper (7.7.26015): starting
06:20:42 (8448): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 06:20:42] Arguments: --nthreads 8
[2025-11-29 06:20:42] Threads: 8
[2025-11-29 06:20:42] Checking for CVMFS
[2025-11-29 06:20:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 06:20:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 06:20:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 06:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 06:20:45] 2.11.2.0 18053 176068 137908 153432 0 84 12730533 25165824 2358 130560 11 58653802 99.907 27765792 2275 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 06:20:45] CVMFS is ok
[2025-11-29 06:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 06:20:45] Checking for apptainer binary...
[2025-11-29 06:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 06:20:45] Running /usr/bin/apptainer --version
[2025-11-29 06:20:45] apptainer version 1.3.2-1.el7
[2025-11-29 06:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 06:21:15] cg-vwn306.simple-grid.lan
[2025-11-29 06:21:15] apptainer works
[2025-11-29 06:21:16] Set ATHENA_PROC_NUMBER=8
[2025-11-29 06:21:16] Set ATHENA_CORE_NUMBER=8
[2025-11-29 06:21:16] Starting ATLAS job with PandaID=6895355490
[2025-11-29 06:21:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 06:08:48]  *** The last 200 lines of the pilot log: ***
[2025-11-30 06:08:48] 2025-11-30 05:07:37,489 | INFO     | time since job start (85347s) is within the limit (172800.0s)
[2025-11-30 06:08:48] 2025-11-30 05:07:37,582 | INFO     | monitor loop #5737: job 0:6895355490 is in state 'finished'
[2025-11-30 06:08:48] 2025-11-30 05:07:37,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 06:08:48] 2025-11-30 05:07:39,502 | INFO     | time since job start (85349s) is within the limit (172800.0s)
[2025-11-30 06:08:48] 2025-11-30 05:07:40,092 | INFO     | monitor loop #5738: job 0:6895355490 is in state 'finished'
[2025-11-30 06:08:48] 2025-11-30 05:07:40,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 06:08:48] 2025-11-30 05:07:41,509 | INFO     | time since job start (85351s) is within the limit (172800.0s)
[2025-11-30 06:08:48] 2025-11-30 05:07:42,597 | INFO     | monitor loop #5739: job 0:6895355490 is in state 'finished'
[2025-11-30 06:08:48] 2025-11-30 05:07:42,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 06:08:48] 2025-11-30 05:07:42,719 | INFO     | PID=12248 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 06:08:48] 2025-11-30 05:07:42,719 | INFO     | .. there are 9 such processes running
[2025-11-30 06:08:48] 2025-11-30 05:07:43,720 | INFO     | time since job start (85353s) is within the limit (172800.0s)
[2025-11-30 06:08:48] 2025-11-30 05:07:45,102 | INFO     | monitor loop #5740: job 0:6895355490 is in state 'finished'
[2025-11-30 06:08:48] 2025-11-30 05:07:45,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 06:08:48] 2025-11-30 05:07:45,729 | INFO     | time since job start (85355s) is within the limit (172800.0s)
[2025-11-30 06:08:48] 2025-11-30 05:07:46,845 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 06:08:48] 2025-11-30 05:07:46,846 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-30 06:08:48] 2025-11-30 05:07:46,848 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895355490/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 06:08:48] 2025-11-30 05:07:46,848 | INFO     | extracted standard info from prmon json
[2025-11-30 06:08:48] 2025-11-30 05:07:46,848 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 06:08:48] 2025-11-30 05:07:46,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 06:08:48] 2025-11-30 05:07:46,876 | INFO     | fitting pss+swap vs Time
[2025-11-30 06:08:48] 2025-11-30 05:07:46,878 | INFO     | sum of square deviations: 832764550446.8793
[2025-11-30 06:08:48] 2025-11-30 05:07:46,936 | INFO     | sum of deviations: 2556316002338.922
[2025-11-30 06:08:48] 2025-11-30 05:07:46,937 | INFO     | mean x: 1764436767.6093526
[2025-11-30 06:08:48] 2025-11-30 05:07:46,937 | INFO     | mean y: 2836090.2669064747
[2025-11-30 06:08:48] 2025-11-30 05:07:46,937 | INFO     | intersect: -5413410244.5879345
[2025-11-30 06:08:48] 2025-11-30 05:07:46,939 | INFO     | chi2: 22.549586043607757
[2025-11-30 06:08:48] 2025-11-30 05:07:46,941 | INFO     | sum of square deviations: 823810629603.2031
[2025-11-30 06:08:48] 2025-11-30 05:07:46,997 | INFO     | sum of deviations: 3017555450315.721
[2025-11-30 06:08:48] 2025-11-30 05:07:46,997 | INFO     | mean x: 1764436615.1133573
[2025-11-30 06:08:48] 2025-11-30 05:07:46,997 | INFO     | mean y: 2843945.090974729
[2025-11-30 06:08:48] 2025-11-30 05:07:46,997 | INFO     | intersect: -6460152687.079735
[2025-11-30 06:08:48] 2025-11-30 05:07:46,999 | INFO     | chi2: 19.263410736349808
[2025-11-30 06:08:48] 2025-11-30 05:07:46,999 | INFO     | current chi2=19.263410736349808 (change=14.573107022465706 %)
[2025-11-30 06:08:48] 2025-11-30 05:07:46,999 | INFO     | right removable region: 1384
[2025-11-30 06:08:48] 2025-11-30 05:07:47,001 | INFO     | sum of square deviations: 823809688983.2031
[2025-11-30 06:08:48] 2025-11-30 05:07:47,058 | INFO     | sum of deviations: 1986546056178.8315
[2025-11-30 06:08:48] 2025-11-30 05:07:47,058 | INFO     | mean x: 1764436920.1133573
[2025-11-30 06:08:48] 2025-11-30 05:07:47,059 | INFO     | mean y: 2845792.516967509
[2025-11-30 06:08:48] 2025-11-30 05:07:47,059 | INFO     | intersect: -4251941753.565149
[2025-11-30 06:08:48] 2025-11-30 05:07:47,060 | INFO     | chi2: 18.100510457286063
[2025-11-30 06:08:48] 2025-11-30 05:07:47,060 | INFO     | current chi2=18.100510457286063 (change=19.73018740884113 %)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,060 | INFO     | left removable region: 10
[2025-11-30 06:08:48] 2025-11-30 05:07:47,062 | INFO     | sum of square deviations: 804336552798.9584
[2025-11-30 06:08:48] 2025-11-30 05:07:47,118 | INFO     | sum of deviations: 2095656708685.023
[2025-11-30 06:08:48] 2025-11-30 05:07:47,119 | INFO     | mean x: 1764436889.6222708
[2025-11-30 06:08:48] 2025-11-30 05:07:47,119 | INFO     | mean y: 2863255.2736535664
[2025-11-30 06:08:48] 2025-11-30 05:07:47,119 | INFO     | intersect: -4594284533.075665
[2025-11-30 06:08:48] 2025-11-30 05:07:47,120 | INFO     | chi2: 11.330151419574543
[2025-11-30 06:08:48] 2025-11-30 05:07:47,121 | INFO     | current memory leak: 2.61 B/s (using 1374 data points, chi2=11.33)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | ..............................
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . Timing measurements:
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . get job = 0 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . initial setup = 6 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . payload setup = 150 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . stage-in = 0 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . payload execution = 84916 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,122 | INFO     | . stage-out = 5 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,123 | INFO     | . log creation = 2 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,123 | INFO     | ..............................
[2025-11-30 06:08:48] 2025-11-30 05:07:47,247 | INFO     | 
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | job summary report
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | --------------------------------------------------
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | PanDA job id: 6895355490
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | task id: 47556137
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | errors: (none)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | pilot state: finished 
[2025-11-30 06:08:48] 2025-11-30 05:07:47,248 | INFO     | transexitcode: 0
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | exeerrorcode: 0
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | exeerrordiag: 
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | exitcode: 0
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | exitmsg: OK
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | cpuconsumptiontime: 319203 s
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | nevents: 1000
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | neventsw: 0
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | pid: 18892
[2025-11-30 06:08:48] 2025-11-30 05:07:47,249 | INFO     | pgrp: 18892
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | corecount: 8
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | event service: False
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 66: 2284638, 76: 2284666, 87: 2284722, 88: 2285012, 98: 2285320, 8
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | --------------------------------------------------
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | 
[2025-11-30 06:08:48] 2025-11-30 05:07:47,250 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-30 06:08:48] 2025-11-30 05:07:47,272 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,272 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 06:08:48] 2025-11-30 05:07:47,274 | INFO     | job 6895355490 has completed (purged errors)
[2025-11-30 06:08:48] 2025-11-30 05:07:47,275 | INFO     | overall cleanup function is called
[2025-11-30 06:08:48] 2025-11-30 05:07:48,292 | INFO     | --- collectZombieJob: --- 10, [18892]
[2025-11-30 06:08:48] 2025-11-30 05:07:48,292 | INFO     | zombie collector waiting for pid 18892
[2025-11-30 06:08:48] 2025-11-30 05:07:48,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 06:08:48] 2025-11-30 05:07:48,293 | INFO     | collected zombie processes
[2025-11-30 06:08:48] 2025-11-30 05:07:48,293 | INFO     | will attempt to kill all subprocesses of pid=18892
[2025-11-30 06:08:48] 2025-11-30 05:07:48,404 | INFO     | process IDs to be killed: [18892] (in reverse order)
[2025-11-30 06:08:48] 2025-11-30 05:07:48,459 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 06:08:48] 2025-11-30 05:07:48,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 06:08:48] 2025-11-30 05:07:48,463 | INFO     | did not find any defunct processes belonging to 18892
[2025-11-30 06:08:48] 2025-11-30 05:07:48,466 | INFO     | did not find any defunct processes belonging to 18892
[2025-11-30 06:08:48] 2025-11-30 05:07:48,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 06:08:48] 2025-11-30 05:07:48,468 | INFO     | ready for new job
[2025-11-30 06:08:48] 2025-11-30 05:07:48,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 06:08:48] 2025-11-30 05:07:48,474 | INFO     | ***************************************
[2025-11-30 06:08:48] 2025-11-30 05:07:48,474 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 06:08:48] 2025-11-30 05:07:48,474 | INFO     | ***************************************
[2025-11-30 06:08:48] 2025-11-30 05:07:48,474 | INFO     | 
[2025-11-30 06:08:48] 2025-11-30 05:07:48,475 | INFO     | pilot is running in a VM
[2025-11-30 06:08:48] 2025-11-30 05:07:48,475 | INFO     | architecture information:
[2025-11-30 06:08:48] 2025-11-30 05:07:48,475 | INFO     | executing command: cat /etc/os-release
[2025-11-30 06:08:48] 2025-11-30 05:07:48,518 | INFO     | cat /etc/os-release:
[2025-11-30 06:08:48] NAME="CentOS Linux"
[2025-11-30 06:08:48] VERSION="7 (Core)"
[2025-11-30 06:08:48] ID="centos"
[2025-11-30 06:08:48] ID_LIKE="rhel fedora"
[2025-11-30 06:08:48] VERSION_ID="7"
[2025-11-30 06:08:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 06:08:48] ANSI_COLOR="0;31"
[2025-11-30 06:08:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 06:08:48] HOME_URL="https://www.centos.org/"
[2025-11-30 06:08:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 06:08:48] 
[2025-11-30 06:08:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 06:08:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 06:08:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 06:08:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 06:08:48] 
[2025-11-30 06:08:48] 2025-11-30 05:07:48,518 | INFO     | ***************************************
[2025-11-30 06:08:48] 2025-11-30 05:07:49,021 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-30 06:08:48] 2025-11-30 05:07:49,298 | INFO     | sufficient remaining disk space (488026144768 B)
[2025-11-30 06:08:48] 2025-11-30 05:07:49,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 06:08:48] 2025-11-30 05:07:49,298 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 06:08:48] 2025-11-30 05:07:49,298 | INFO     | update_server=False
[2025-11-30 06:08:48] 2025-11-30 05:07:49,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 06:08:48] 2025-11-30 05:07:49,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 06:08:48] 2025-11-30 05:07:49,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 06:08:48] 2025-11-30 05:07:49,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:08:48] 2025-11-30 05:07:49,304 | INFO     | aborting loop
[2025-11-30 06:08:48] 2025-11-30 05:07:49,364 | INFO     | all job control threads have been joined
[2025-11-30 06:08:48] 2025-11-30 05:07:49,419 | INFO     | all data control threads have been joined
[2025-11-30 06:08:48] 2025-11-30 05:07:49,695 | INFO     | all payload control threads have been joined
[2025-11-30 06:08:48] 2025-11-30 05:07:50,304 | INFO     | [job] retrieve thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:50,310 | INFO     | [job] job monitor thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:50,370 | INFO     | [job] control thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:50,425 | INFO     | [data] control thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:50,701 | INFO     | [payload] control thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:50,729 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,141 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,306 | INFO     | [data] copytool_out thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,348 | INFO     | [data] copytool_in thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,405 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,708 | INFO     | [job] validate thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,718 | INFO     | [payload] validate_post thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:51,834 | INFO     | [payload] failed_post thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:52,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 06:08:48] 2025-11-30 05:07:53,268 | INFO     | [job] queue monitor thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:53,310 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:07:59,902 | INFO     | job.realtimelogging is not enabled
[2025-11-30 06:08:48] 2025-11-30 05:08:00,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 06:08:48] 2025-11-30 05:08:18,966 | INFO     | PID=12248 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 06:08:48] 2025-11-30 05:08:18,967 | INFO     | .. there are 9 such processes running
[2025-11-30 06:08:48] 2025-11-30 05:08:18,967 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 06:08:48] 2025-11-30 05:08:18,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 06:08:48] 2025-11-30 05:08:18,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 06:08:48] 2025-11-30 05:08:39,333 | INFO     | [monitor] cgroup control has ended
[2025-11-30 06:08:48] 2025-11-30 05:08:40,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221679257408)>', '<ExcThread(monitor, started 140221370832640)>']
[2025-11-30 06:08:48] 2025-11-30 05:08:41,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 06:08:48] 2025-11-30 05:08:41,097 | INFO     | [monitor] control thread has ended
[2025-11-30 06:08:48] 2025-11-30 05:08:45,549 | INFO     | all workflow threads have been joined
[2025-11-30 06:08:48] 2025-11-30 05:08:45,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 06:08:48] 2025-11-30 05:08:45,550 | INFO     | traces error code: 0
[2025-11-30 06:08:48] 2025-11-30 05:08:45,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 06:08:48] 2025-11-30 05:08:45,775 [wrapper] ==== pilot stdout END ====
[2025-11-30 06:08:48] 2025-11-30 05:08:45,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 06:08:48] 2025-11-30 05:08:45,913 [wrapper] pilotpid: 12248
[2025-11-30 06:08:48] 2025-11-30 05:08:45,958 [wrapper] Pilot exit status: 0
[2025-11-30 06:08:48] 2025-11-30 05:08:46,288 [wrapper] pandaids: 6895355490
[2025-11-30 06:08:48] 2025-11-30 05:08:47,165 [wrapper] cleanup supervisor_pilot  7338 12249
[2025-11-30 06:08:48] 2025-11-30 05:08:47,216 [wrapper] Test setup, not cleaning
[2025-11-30 06:08:48] 2025-11-30 05:08:47,266 [wrapper] apfmon messages muted
[2025-11-30 06:08:48] 2025-11-30 05:08:47,322 [wrapper] ==== wrapper stdout END ====
[2025-11-30 06:08:48] 2025-11-30 05:08:47,373 [wrapper] ==== wrapper stderr END ====
[2025-11-30 06:08:48]  *** Error codes and diagnostics ***
[2025-11-30 06:08:48]     "exeErrorCode": 0,
[2025-11-30 06:08:48]     "exeErrorDiag": "",
[2025-11-30 06:08:48]     "pilotErrorCode": 0,
[2025-11-30 06:08:48]     "pilotErrorDiag": "",
[2025-11-30 06:08:48]  *** Listing of results directory ***
[2025-11-30 06:08:48] total 1327572
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc      5112 Nov 23 08:37 queuedata.json
[2025-11-30 06:08:48] -rwx------. 1 boinc boinc     36292 Nov 23 08:37 runpilot2-wrapper.sh
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc    576529 Nov 23 08:37 pilot3.tar.gz
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc       100 Nov 29 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 06:08:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 06:20 run_atlas
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc       105 Nov 29 06:20 job.xml
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc      6391 Nov 29 06:20 init_data.xml
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc 410997859 Nov 29 06:20 EVNT.47483658._000661.pool.root.1
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc     15847 Nov 29 06:20 start_atlas.sh
[2025-11-30 06:08:48] drwxrwx--x. 2 boinc boinc        68 Nov 29 06:20 shared
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc    590093 Nov 29 06:20 input.tar.gz
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc         0 Nov 29 06:20 boinc_lockfile
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc      2785 Nov 29 06:21 pandaJob.out
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc    991826 Nov 29 06:25 agis_schedconf.cvmfs.json
[2025-11-30 06:08:48] drwx------. 5 boinc boinc      4096 Nov 29 06:25 pilot3
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc       533 Nov 30 05:39 boinc_task_state.xml
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc 916861919 Nov 30 06:04 HITS.47556137._006567.pool.root.1
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc      1029 Nov 30 06:06 memory_monitor_summary.json
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc   1516240 Nov 30 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc   2472542 Nov 30 06:06 log.47556137._006567.job.log.tgz.1
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc      8627 Nov 30 06:07 heartbeat.json
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc        95 Nov 30 06:08 pilot_heartbeat.json
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc        29 Nov 30 06:08 wrapper_checkpoint.txt
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc      8192 Nov 30 06:08 boinc_mmap_file
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc      4956 Nov 30 06:08 pilotlog.txt
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc  11358499 Nov 30 06:08 log.47556137._006567.job.log.1
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc       353 Nov 30 06:08 output.list
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc       620 Nov 30 06:08 runtime_log
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc  13854720 Nov 30 06:08 result.tar.gz
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc      8817 Nov 30 06:08 runtime_log.err
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc       662 Nov 30 06:08 iHtNDmYqJh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPjKKDmWeejEo.diag
[2025-11-30 06:08:48] -rw-r--r--. 1 boinc boinc     21487 Nov 30 06:08 stderr.txt
[2025-11-30 06:08:48] HITS file was successfully produced:
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc 916861919 Nov 30 06:04 shared/HITS.pool.root.1
[2025-11-30 06:08:48]  *** Contents of shared directory: ***
[2025-11-30 06:08:48] total 1310872
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc 410997859 Nov 29 06:20 ATLAS.root_0
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc     15847 Nov 29 06:20 start_atlas.sh
[2025-11-30 06:08:48] -rw-r--r--. 2 boinc boinc    590093 Nov 29 06:20 input.tar.gz
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc 916861919 Nov 30 06:04 HITS.pool.root.1
[2025-11-30 06:08:48] -rw-------. 1 boinc boinc  13854720 Nov 30 06:08 result.tar.gz
06:08:50 (8448): run_atlas exited; CPU time 319846.653744
06:08:50 (8448): called boinc_finish(0)

</stderr_txt>
]]>

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