Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-01 02:25:48 (31116): vboxwrapper version 26210
2025-12-01 02:25:48 (31116): BOINC client version: 8.2.4
2025-12-01 02:25:48 (31116): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-12-01 02:25:49 (31116): Successfully copied 'init_data.xml' to the shared directory.
2025-12-01 02:25:49 (31116): Create VM. (boinc_c37ca12792685c16, slot#1)
2025-12-01 02:25:50 (31116): Setting Memory Size for VM. (4800MB)
2025-12-01 02:25:50 (31116): Setting CPU Count for VM. (8)
2025-12-01 02:25:50 (31116): Setting Chipset Options for VM.
2025-12-01 02:25:50 (31116): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-01 02:25:51 (31116): Setting Boot Options for VM.
2025-12-01 02:25:51 (31116): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-01 02:25:51 (31116): Enabling VM Network Access.
2025-12-01 02:25:52 (31116): Disabling USB Support for VM.
2025-12-01 02:25:52 (31116): Disabling COM Port Support for VM.
2025-12-01 02:25:52 (31116): Disabling LPT Port Support for VM.
2025-12-01 02:25:52 (31116): Disabling Audio Support for VM.
2025-12-01 02:25:53 (31116): Disabling Clipboard Support for VM.
2025-12-01 02:25:53 (31116): Disabling Drag and Drop Support for VM.
2025-12-01 02:25:53 (31116): Adding storage controller(s) to VM.
2025-12-01 02:25:53 (31116): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-01 02:25:54 (31116): Adding VirtualBox Guest Additions to VM.
2025-12-01 02:25:54 (31116): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-01 02:25:55 (31116): forwarding host port 49907 to guest port 80
2025-12-01 02:25:55 (31116): Enabling remote desktop for VM.
2025-12-01 02:25:55 (31116): Required extension pack not installed, remote desktop not enabled.
2025-12-01 02:25:55 (31116): Enabling shared directory for VM.
2025-12-01 02:25:56 (31116): Starting VM using VBoxManage interface. (boinc_c37ca12792685c16, slot#1)
2025-12-01 02:26:01 (31116): Successfully started VM. (PID = '22648')
2025-12-01 02:26:01 (31116): Reporting VM Process ID to BOINC.
2025-12-01 02:26:01 (31116): Guest Log: BIOS: VirtualBox 7.0.6
2025-12-01 02:26:01 (31116): Guest Log: CPUID EDX: 0x178bfbff
2025-12-01 02:26:01 (31116): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-01 02:26:01 (31116): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-01 02:26:01 (31116): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-01 02:26:01 (31116): Detected: Web Application Enabled (http://localhost:49907)
2025-12-01 02:26:01 (31116): Preference change detected
2025-12-01 02:26:01 (31116): Setting CPU throttle for VM. (100%)
2025-12-01 02:26:01 (31116): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-01 02:26:03 (31116): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-01 02:26:03 (31116): Guest Log: BIOS: Booting from Hard Disk...
2025-12-01 02:26:06 (31116): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-01 02:26:06 (31116): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-01 02:26:06 (31116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-01 02:26:14 (31116): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-01 02:26:14 (31116): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-01 02:26:24 (31116): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000123 main     Log opened 2025-12-01T02:26:22.674785000Z
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000213 main     OS Product: Linux
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000236 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000256 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000274 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000275 main     Process ID: 1371
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000275 main     Package type: LINUX_64BITS_GENERIC
2025-12-01 02:26:24 (31116): Guest Log: 00:00:00.000778 main     5.2.32 r132073 started. Verbose level = 0
2025-12-01 02:26:24 (31116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-01 02:26:24 (31116): Guest Log: [INFO] Mounting shared directory
2025-12-01 02:26:24 (31116): Guest Log: [INFO] Checking for init_data.xml
2025-12-01 02:26:28 (31116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-01 02:26:28 (31116): Guest Log: [INFO] Detected branch: prod
2025-12-01 02:26:28 (31116): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-01 02:26:28 (31116): Guest Log: Copying input files
2025-12-01 02:26:30 (31116): Guest Log: Copied input files into RunAtlas.
2025-12-01 02:26:30 (31116): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-01 02:26:30 (31116): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-01 02:26:30 (31116): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-01 02:26:30 (31116): Guest Log: Further information can be found at the LHC@home message board.
2025-12-01 02:26:34 (31116): Guest Log: 00:00:10.003500 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 716 649 000ns (GuestNow=1 764 584 794 392 882 000 ns GuestLast=1 764 555 982 676 233 000 ns fSetTimeLastLoop=true )
2025-12-01 02:27:24 (31116): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-01 02:27:25 (31116): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-01 02:27:25 (31116): Guest Log: 2.6.3.0 1649 0 30152 153512 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-01 02:27:28 (31116): Guest Log: copied the webapp to /var/www
2025-12-01 02:27:28 (31116): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-01 02:27:28 (31116): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-01 02:27:29 (31116): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-01 02:27:29 (31116): Guest Log:  *** Starting ATLAS job. (PandaID=6891565163 taskID=47493068) ***
2025-12-01 04:06:37 (31116): Status Report: Elapsed Time: '6000.000000'
2025-12-01 04:06:37 (31116): Status Report: CPU Time: '37399.421875'
2025-12-01 05:47:15 (31116): Status Report: Elapsed Time: '12000.000000'
2025-12-01 05:47:15 (31116): Status Report: CPU Time: '77838.640625'
2025-12-01 07:27:55 (31116): Status Report: Elapsed Time: '18000.000000'
2025-12-01 07:27:55 (31116): Status Report: CPU Time: '118305.296875'
2025-12-01 09:08:35 (31116): Status Report: Elapsed Time: '24000.000000'
2025-12-01 09:08:35 (31116): Status Report: CPU Time: '158809.546875'
2025-12-01 10:32:11 (31116): Guest Log:  *** Job finished ***
2025-12-01 10:32:11 (31116): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:22,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:22,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:51,034 | INFO     | [monitor] cgroup control has ended
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:52,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171672631104)>', '<ExcThread(monitor, started 140171014039296)>']
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:53,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:53,249 | INFO     | [monitor] control thread has ended
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:57,837 | INFO     | all workflow threads have been joined
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:57,837 | INFO     | end of generic workflow (traces error code: 0)
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:57,837 | INFO     | traces error code: 0
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:57,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,057 [wrapper] ==== pilot stdout END ====
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,062 [wrapper] ==== wrapper stdout RESUME ====
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,066 [wrapper] pilotpid: 6087
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,071 [wrapper] Pilot exit status: 0
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,098 [wrapper] pandaids: 6891565163
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,127 [wrapper] cleanup supervisor_pilot  8033 6088
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,132 [wrapper] Test setup, not cleaning
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,136 [wrapper] apfmon messages muted
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,140 [wrapper] ==== wrapper stdout END ====
2025-12-01 10:32:11 (31116): Guest Log: 2025-12-01 18:31:58,145 [wrapper] ==== wrapper stderr END ====
2025-12-01 10:32:11 (31116): Guest Log:  *** Error codes and diagnostics ***
2025-12-01 10:32:11 (31116): Guest Log:     "exeErrorCode": 0,
2025-12-01 10:32:11 (31116): Guest Log:     "exeErrorDiag": "",
2025-12-01 10:32:11 (31116): Guest Log:     "pilotErrorCode": 0,
2025-12-01 10:32:11 (31116): Guest Log:     "pilotErrorDiag": "",
2025-12-01 10:32:11 (31116): Guest Log:  *** Listing of results directory ***
2025-12-01 10:32:11 (31116): Guest Log: total 903780
2025-12-01 10:32:11 (31116): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-12-01 10:32:11 (31116): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:29 queuedata.json
2025-12-01 10:32:11 (31116): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:30 runpilot2-wrapper.sh
2025-12-01 10:32:11 (31116): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Dec  1 10:26 start_atlas.sh
2025-12-01 10:32:11 (31116): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Dec  1 10:26 input.tar.gz
2025-12-01 10:32:11 (31116): Guest Log: -rwxr-xr-x. 1 atlas atlas      9542 Dec  1 10:26 init_data.xml
2025-12-01 10:32:11 (31116): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  1 10:26 EVNT.47493065._000135.pool.root.1 -> /data/./ATLAS.root_0
2025-12-01 10:32:11 (31116): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Dec  1 10:27 pandaJob.out
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas    992532 Dec  1 10:28 agis_schedconf.cvmfs.json
2025-12-01 10:32:11 (31116): Guest Log: drwx------. 5 atlas atlas      4096 Dec  1 10:28 pilot3
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas 910497503 Dec  1 18:30 HITS.47493068._001350.pool.root.1
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas        95 Dec  1 18:30 pilot_heartbeat.json
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas      1038 Dec  1 18:30 memory_monitor_summary.json
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  1 18:30 agis_ddmendpoints.agis.ALL.json
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas   1759624 Dec  1 18:30 log.47493068._001350.job.log.tgz.1
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas      8635 Dec  1 18:30 heartbeat.json
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas      4805 Dec  1 18:31 pilotlog.txt
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas   3802891 Dec  1 18:31 log.47493068._001350.job.log.1
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas       353 Dec  1 18:31 output.list
2025-12-01 10:32:11 (31116): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  1 18:31 runtime_log
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas   5580800 Dec  1 18:31 result.tar.gz
2025-12-01 10:32:11 (31116): Guest Log: -rw-r--r--. 1 atlas atlas      8655 Dec  1 18:31 runtime_log.err
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas       667 Dec  1 18:31 7DPLDmWqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNSFKDmhlNU6n.diag
2025-12-01 10:32:11 (31116): Guest Log: Looking for outputfile HITS.47493068._001350.pool.root.1
2025-12-01 10:32:11 (31116): Guest Log: HITS file was successfully produced
2025-12-01 10:32:11 (31116): Guest Log: -rw-------. 1 atlas atlas 910497503 Dec  1 18:30 /home/atlas/RunAtlas/HITS.47493068._001350.pool.root.1
2025-12-01 10:32:17 (31116): Guest Log: Successfully finished the ATLAS job!
2025-12-01 10:32:17 (31116): Guest Log: Copying the results back to the shared directory!
2025-12-01 10:32:17 (31116): Guest Log:  *** Contents of shared directory: ***
2025-12-01 10:32:17 (31116): Guest Log: total 1293716
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root 408057520 Dec  1 10:25 ATLAS.root_0
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root 910497503 Dec  1  2025 HITS.pool.root.1
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root      9542 Dec  1 10:25 init_data.xml
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 26 20:45 input.tar.gz
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root   5580800 Dec  1  2025 result.tar.gz
2025-12-01 10:32:17 (31116): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 26 20:45 start_atlas.sh
2025-12-01 10:32:17 (31116): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-01 10:32:17 (31116): VM Completion File Detected.
2025-12-01 10:32:17 (31116): Powering off VM.
2025-12-01 10:32:19 (31116): Successfully stopped VM.
2025-12-01 10:32:19 (31116): Deregistering VM. (boinc_c37ca12792685c16, slot#1)
2025-12-01 10:32:19 (31116): Removing network bandwidth throttle group from VM.
2025-12-01 10:32:19 (31116): Removing VM from VirtualBox.
2025-12-01 10:32:24 (31116): called boinc_finish(0)

</stderr_txt>
]]>

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