Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:47:18 (3217586): wrapper (7.7.26015): starting
21:47:18 (3217586): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:47:18] Arguments: --nthreads 8
[2025-11-26 21:47:18] Threads: 8
[2025-11-26 21:47:18] Checking for CVMFS
[2025-11-26 21:47:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:47:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:47:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:47:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:47:20] 2.13.2.0 14352 35226 218172 153343 1 403 33983983 40960001 31590 16776704 0 274987448 99.678 222115743 48647 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 21:47:20] CVMFS is ok
[2025-11-26 21:47:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 21:47:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 21:47:20] Further information can be found at the LHC@home message board.
[2025-11-26 21:47:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:47:20] Checking for apptainer binary...
[2025-11-26 21:47:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:47:20] Running /usr/bin/apptainer --version
[2025-11-26 21:47:20] apptainer version 1.4.4-1.el9
[2025-11-26 21:47:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:47:20] c-208-36.aglt2.org
[2025-11-26 21:47:20] apptainer works
[2025-11-26 21:47:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:47:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:47:21] Starting ATLAS job with PandaID=6891580777
[2025-11-26 21:47:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:53:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:53:25] 2025-11-27 21:52:28,564 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 16:53:25] 2025-11-27 21:52:29,369 | INFO     | time since job start (68648s) is within the limit (172800.0s)
[2025-11-27 16:53:25] 2025-11-27 21:52:30,999 | INFO     | monitor loop #4265: job 0:6891580777 is in state 'finished'
[2025-11-27 16:53:25] 2025-11-27 21:52:30,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:53:25] 2025-11-27 21:52:31,375 | INFO     | time since job start (68650s) is within the limit (172800.0s)
[2025-11-27 16:53:25] 2025-11-27 21:52:33,382 | INFO     | time since job start (68652s) is within the limit (172800.0s)
[2025-11-27 16:53:25] 2025-11-27 21:52:33,503 | INFO     | monitor loop #4266: job 0:6891580777 is in state 'finished'
[2025-11-27 16:53:25] 2025-11-27 21:52:33,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:53:25] 2025-11-27 21:52:35,389 | INFO     | time since job start (68654s) is within the limit (172800.0s)
[2025-11-27 16:53:25] 2025-11-27 21:52:36,008 | INFO     | monitor loop #4267: job 0:6891580777 is in state 'finished'
[2025-11-27 16:53:25] 2025-11-27 21:52:36,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:53:25] 2025-11-27 21:52:36,981 | INFO     | PID=3221877 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 16:53:25] 2025-11-27 21:52:36,981 | INFO     | .. there are 31 such processes running
[2025-11-27 16:53:25] 2025-11-27 21:52:37,984 | INFO     | time since job start (68656s) is within the limit (172800.0s)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,294 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:53:25] 2025-11-27 21:52:38,299 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3734.5398437500007
[2025-11-27 16:53:25] 2025-11-27 21:52:38,312 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891580777/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,313 | INFO     | extracted standard info from prmon json
[2025-11-27 16:53:25] 2025-11-27 21:52:38,313 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:53:25] 2025-11-27 21:52:38,313 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:53:25] 2025-11-27 21:52:38,322 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:53:25] 2025-11-27 21:52:38,323 | INFO     | sum of square deviations: 440319944145.85284
[2025-11-27 16:53:25] 2025-11-27 21:52:38,337 | INFO     | sum of deviations: 1851377609552.867
[2025-11-27 16:53:25] 2025-11-27 21:52:38,337 | INFO     | mean x: 1764246072.838968
[2025-11-27 16:53:25] 2025-11-27 21:52:38,338 | INFO     | mean y: 2819994.916370107
[2025-11-27 16:53:25] 2025-11-27 21:52:38,338 | INFO     | intersect: -7415162588.933404
[2025-11-27 16:53:25] 2025-11-27 21:52:38,338 | INFO     | chi2: 29.530054976241704
[2025-11-27 16:53:25] 2025-11-27 21:52:38,339 | INFO     | sum of square deviations: 434470228356.8484
[2025-11-27 16:53:25] 2025-11-27 21:52:38,353 | INFO     | sum of deviations: 2203067068431.212
[2025-11-27 16:53:25] 2025-11-27 21:52:38,353 | INFO     | mean x: 1764245920.344951
[2025-11-27 16:53:25] 2025-11-27 21:52:38,353 | INFO     | mean y: 2829160.957998213
[2025-11-27 16:53:25] 2025-11-27 21:52:38,353 | INFO     | intersect: -8943128085.469772
[2025-11-27 16:53:25] 2025-11-27 21:52:38,354 | INFO     | chi2: 26.386294261604206
[2025-11-27 16:53:25] 2025-11-27 21:52:38,354 | INFO     | current chi2=26.386294261604206 (change=10.645969732080752 %)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,354 | INFO     | right removable region: 1118
[2025-11-27 16:53:25] 2025-11-27 21:52:38,355 | INFO     | sum of square deviations: 434469310306.8494
[2025-11-27 16:53:25] 2025-11-27 21:52:38,369 | INFO     | sum of deviations: 1408071405110.402
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | mean x: 1764246225.344951
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | mean y: 2831548.3538873997
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | intersect: -5714913301.62804
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | chi2: 25.37291627500513
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | current chi2=25.37291627500513 (change=14.077653104883087 %)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,370 | INFO     | left removable region: 10
[2025-11-27 16:53:25] 2025-11-27 21:52:38,371 | INFO     | sum of square deviations: 421781897228.7536
[2025-11-27 16:53:25] 2025-11-27 21:52:38,385 | INFO     | sum of deviations: 1420861512771.6934
[2025-11-27 16:53:25] 2025-11-27 21:52:38,386 | INFO     | mean x: 1764246194.8583033
[2025-11-27 16:53:25] 2025-11-27 21:52:38,386 | INFO     | mean y: 2853334.794223827
[2025-11-27 16:53:25] 2025-11-27 21:52:38,386 | INFO     | intersect: -5940383048.270684
[2025-11-27 16:53:25] 2025-11-27 21:52:38,386 | INFO     | chi2: 18.266121448110585
[2025-11-27 16:53:25] 2025-11-27 21:52:38,387 | INFO     | current memory leak: 3.37 B/s (using 1108 data points, chi2=18.27)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | could have reported an average CPU frequency of 3776 MHz (41 samples)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | ..............................
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . Timing measurements:
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . get job = 0 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . initial setup = 7 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . payload setup = 39 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . stage-in = 0 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . payload execution = 68543 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . stage-out = 3 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | . log creation = 1 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,388 | INFO     | ..............................
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | 
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | job summary report
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | --------------------------------------------------
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | PanDA job id: 6891580777
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | task id: 47493068
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | errors: (none)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | pilot state: finished 
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | transexitcode: 0
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | exeerrorcode: 0
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | exeerrordiag: 
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | exitcode: 0
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | exitmsg: OK
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | cpuconsumptiontime: 145228 s
[2025-11-27 16:53:25] 2025-11-27 21:52:38,448 | INFO     | nevents: 1000
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | neventsw: 0
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | pid: 3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | pgrp: 3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | corecount: 8
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | event service: False
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | sizes: {0: 2283425, 1: 2284281, 12: 2284281, 23: 2284309, 27: 2284599, 33: 2284627, 68583: 2341512, 68584: 2341511, 68587: 2350561, 68588: 2350617, 68601: 2350959}
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | --------------------------------------------------
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | 
[2025-11-27 16:53:25] 2025-11-27 21:52:38,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:53:25] 2025-11-27 21:52:38,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | job 6891580777 has completed (purged errors)
[2025-11-27 16:53:25] 2025-11-27 21:52:38,484 | INFO     | overall cleanup function is called
[2025-11-27 16:53:25] 2025-11-27 21:52:39,548 | INFO     | --- collectZombieJob: --- 10, [3231814]
[2025-11-27 16:53:25] 2025-11-27 21:52:39,549 | INFO     | zombie collector waiting for pid 3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:39,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:53:25] 2025-11-27 21:52:39,549 | INFO     | collected zombie processes
[2025-11-27 16:53:25] 2025-11-27 21:52:39,549 | INFO     | will attempt to kill all subprocesses of pid=3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:39,936 | INFO     | process IDs to be killed: [3231814] (in reverse order)
[2025-11-27 16:53:25] 2025-11-27 21:52:40,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:53:25] 2025-11-27 21:52:40,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:53:25] 2025-11-27 21:52:40,094 | INFO     | did not find any defunct processes belonging to 3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:40,140 | INFO     | did not find any defunct processes belonging to 3231814
[2025-11-27 16:53:25] 2025-11-27 21:52:40,141 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:53:25] 2025-11-27 21:52:40,141 | INFO     | ready for new job
[2025-11-27 16:53:25] 2025-11-27 21:52:40,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:53:25] 2025-11-27 21:52:40,144 | INFO     | ***************************************
[2025-11-27 16:53:25] 2025-11-27 21:52:40,144 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:53:25] 2025-11-27 21:52:40,144 | INFO     | ***************************************
[2025-11-27 16:53:25] 2025-11-27 21:52:40,144 | INFO     | 
[2025-11-27 16:53:25] 2025-11-27 21:52:40,148 | INFO     | architecture information:
[2025-11-27 16:53:25] 2025-11-27 21:52:40,150 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:53:25] 2025-11-27 21:52:40,168 | INFO     | cat /etc/os-release:
[2025-11-27 16:53:25] NAME="CentOS Linux"
[2025-11-27 16:53:25] VERSION="7 (Core)"
[2025-11-27 16:53:25] ID="centos"
[2025-11-27 16:53:25] ID_LIKE="rhel fedora"
[2025-11-27 16:53:25] VERSION_ID="7"
[2025-11-27 16:53:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:53:25] ANSI_COLOR="0;31"
[2025-11-27 16:53:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:53:25] HOME_URL="https://www.centos.org/"
[2025-11-27 16:53:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:53:25] 
[2025-11-27 16:53:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:53:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:53:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:53:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:53:25] 
[2025-11-27 16:53:25] 2025-11-27 21:52:40,168 | INFO     | ***************************************
[2025-11-27 16:53:25] 2025-11-27 21:52:40,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:53:25] 2025-11-27 21:52:40,697 | INFO     | sufficient remaining disk space (158605508608 B)
[2025-11-27 16:53:25] 2025-11-27 21:52:40,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:53:25] 2025-11-27 21:52:40,698 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:53:25] 2025-11-27 21:52:40,698 | INFO     | update_server=False
[2025-11-27 16:53:25] 2025-11-27 21:52:40,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:53:25] 2025-11-27 21:52:40,699 | INFO     | all data control threads have been joined
[2025-11-27 16:53:25] 2025-11-27 21:52:40,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:53:25] 2025-11-27 21:52:40,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:53:25] 2025-11-27 21:52:41,011 | INFO     | all job control threads have been joined
[2025-11-27 16:53:25] 2025-11-27 21:52:41,024 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:53:25] 2025-11-27 21:52:41,024 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:53:25] 2025-11-27 21:52:41,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:53:25] 2025-11-27 21:52:41,024 | INFO     | will abort loop
[2025-11-27 16:53:25] 2025-11-27 21:52:41,704 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:41,704 | INFO     | [data] control thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:41,801 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:41,882 | INFO     | all payload control threads have been joined
[2025-11-27 16:53:25] 2025-11-27 21:52:41,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,016 | INFO     | [job] control thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,030 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,482 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,487 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,774 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,803 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,886 | INFO     | [job] validate thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,889 | INFO     | [payload] control thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:42,914 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:43,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:53:25] 2025-11-27 21:52:44,470 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:44,718 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:52:50,911 | INFO     | job.realtimelogging is not enabled
[2025-11-27 16:53:25] 2025-11-27 21:52:51,916 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:53:25] 2025-11-27 21:53:11,570 | INFO     | PID=3221877 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:53:25] 2025-11-27 21:53:11,570 | INFO     | .. there are 31 such processes running
[2025-11-27 16:53:25] 2025-11-27 21:53:11,570 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:53:25] 2025-11-27 21:53:11,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:53:25] 2025-11-27 21:53:11,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:53:25] 2025-11-27 21:53:19,595 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:53:25] 2025-11-27 21:53:19,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937933440832)>', '<ExcThread(monitor, started 139937567446784)>']
[2025-11-27 16:53:25] 2025-11-27 21:53:20,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:53:25] 2025-11-27 21:53:20,619 | INFO     | [monitor] control thread has ended
[2025-11-27 16:53:25] 2025-11-27 21:53:24,902 | INFO     | all workflow threads have been joined
[2025-11-27 16:53:25] 2025-11-27 21:53:24,902 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:53:25] 2025-11-27 21:53:24,902 | INFO     | traces error code: 0
[2025-11-27 16:53:25] 2025-11-27 21:53:24,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:53:25] 2025-11-27 21:53:25,020 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:53:25] 2025-11-27 21:53:25,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:53:25] 2025-11-27 21:53:25,037 [wrapper] pilotpid: 3221877
[2025-11-27 16:53:25] 2025-11-27 21:53:25,039 [wrapper] Pilot exit status: 0
[2025-11-27 16:53:25] 2025-11-27 21:53:25,074 [wrapper] pandaids: 6891580777
[2025-11-27 16:53:25] 2025-11-27 21:53:25,177 [wrapper] cleanup supervisor_pilot 1167332 3221878
[2025-11-27 16:53:25] 2025-11-27 21:53:25,185 [wrapper] Test setup, not cleaning
[2025-11-27 16:53:25] 2025-11-27 21:53:25,191 [wrapper] apfmon messages muted
[2025-11-27 16:53:25] 2025-11-27 21:53:25,194 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:53:25] 2025-11-27 21:53:25,197 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:53:25]  *** Error codes and diagnostics ***
[2025-11-27 16:53:25]     "exeErrorCode": 0,
[2025-11-27 16:53:25]     "exeErrorDiag": "",
[2025-11-27 16:53:25]     "pilotErrorCode": 0,
[2025-11-27 16:53:25]     "pilotErrorDiag": "",
[2025-11-27 16:53:25]  *** Listing of results directory ***
[2025-11-27 16:53:25] total 1337204
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:56 queuedata.json
[2025-11-27 16:53:25] -rwx------. 1 boincer umatlas     36292 Nov 18 11:56 runpilot2-wrapper.sh
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas       100 Nov 26 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:53:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 21:47 run_atlas
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas       105 Nov 26 21:47 job.xml
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas 412360591 Nov 26 21:47 EVNT.47493065._000410.pool.root.1
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 21:47 start_atlas.sh
[2025-11-27 16:53:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 21:47 shared
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 21:47 input.tar.gz
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas         0 Nov 26 21:47 boinc_lockfile
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas      2772 Nov 26 21:47 pandaJob.out
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas    991554 Nov 26 21:48 agis_schedconf.cvmfs.json
[2025-11-27 16:53:25] drwx------. 5 boincer umatlas      4096 Nov 26 21:48 pilot3
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:18 boinc_task_state.xml
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 16:46 init_data.xml
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas 930736958 Nov 27 16:51 HITS.47493068._004098.pool.root.1
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas      1077 Nov 27 16:52 memory_monitor_summary.json
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas   2250432 Nov 27 16:52 log.47493068._004098.job.log.tgz.1
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas      8642 Nov 27 16:52 heartbeat.json
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas        95 Nov 27 16:53 pilot_heartbeat.json
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:53 boinc_mmap_file
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:53 wrapper_checkpoint.txt
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas      5083 Nov 27 16:53 pilotlog.txt
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas   8889622 Nov 27 16:53 log.47493068._004098.job.log.1
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas       353 Nov 27 16:53 output.list
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:53 runtime_log
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas  11161600 Nov 27 16:53 result.tar.gz
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas      8704 Nov 27 16:53 runtime_log.err
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas       666 Nov 27 16:53 61tKDmFBef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnUFKDmImRdom.diag
[2025-11-27 16:53:25] -rw-r--r--. 1 boincer umatlas     21926 Nov 27 16:53 stderr.txt
[2025-11-27 16:53:25] HITS file was successfully produced:
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas 930736958 Nov 27 16:51 shared/HITS.pool.root.1
[2025-11-27 16:53:25]  *** Contents of shared directory: ***
[2025-11-27 16:53:25] total 1323124
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas 412360591 Nov 26 21:47 ATLAS.root_0
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 21:47 start_atlas.sh
[2025-11-27 16:53:25] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 21:47 input.tar.gz
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas 930736958 Nov 27 16:51 HITS.pool.root.1
[2025-11-27 16:53:25] -rw-------. 1 boincer umatlas  11161600 Nov 27 16:53 result.tar.gz
16:53:27 (3217586): run_atlas exited; CPU time 146179.994999
16:53:27 (3217586): called boinc_finish(0)

</stderr_txt>
]]>

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