Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:25 (20599): wrapper (7.7.26015): starting
15:01:25 (20599): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 15:01:25] Arguments: --nthreads 12
[2025-11-26 15:01:25] Threads: 12
[2025-11-26 15:01:25] Checking for CVMFS
[2025-11-26 15:01:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:01:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:01:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:01:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:01:25] 2.11.2.0 30551 118076 93852 153333 3 82 18986157 20275200 1 130560 0 52445193 99.917 6413421 29001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 15:01:25] CVMFS is ok
[2025-11-26 15:01:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:01:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:01:25] Further information can be found at the LHC@home message board.
[2025-11-26 15:01:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:01:25] Checking for apptainer binary...
[2025-11-26 15:01:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:01:25] Running /usr/bin/apptainer --version
[2025-11-26 15:01:25] apptainer version 1.3.2-1.el7
[2025-11-26 15:01:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:01:27] c-205-16.aglt2.org
[2025-11-26 15:01:27] apptainer works
[2025-11-26 15:01:27] Set ATHENA_PROC_NUMBER=12
[2025-11-26 15:01:27] Set ATHENA_CORE_NUMBER=12
[2025-11-26 15:01:27] Starting ATLAS job with PandaID=6896716157
[2025-11-26 15:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:31:29 (21234): wrapper (7.7.26015): starting
20:31:29 (21234): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 20:31:29] Arguments: --nthreads 12
[2025-11-26 20:31:29] Threads: 12
[2025-11-26 20:31:29] This job has been restarted, cleaning up previous attempt
[2025-11-26 20:31:29] Checking for CVMFS
[2025-11-26 20:31:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:31:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:31:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:31:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:31:29] 2.11.2.0 30551 118406 92524 153342 1 49 19426182 20275200 1 130560 0 52588037 99.917 6425352 29023 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 20:31:29] CVMFS is ok
[2025-11-26 20:31:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:31:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:31:29] Further information can be found at the LHC@home message board.
[2025-11-26 20:31:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:31:29] Checking for apptainer binary...
[2025-11-26 20:31:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:31:29] Running /usr/bin/apptainer --version
[2025-11-26 20:31:29] apptainer version 1.3.2-1.el7
[2025-11-26 20:31:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:31:31] c-205-16.aglt2.org
[2025-11-26 20:31:31] apptainer works
[2025-11-26 20:31:31] Set ATHENA_PROC_NUMBER=12
[2025-11-26 20:31:31] Set ATHENA_CORE_NUMBER=12
[2025-11-26 20:31:31] Starting ATLAS job with PandaID=6896716157
[2025-11-26 20:31:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:44:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:44:35] 2025-11-27 08:43:42,078 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:44:35] 2025-11-27 08:43:42,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:44:35] 2025-11-27 08:43:42,085 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:44:35] 2025-11-27 08:43:42,085 | INFO     | sum of square deviations: 23803443854.94124
[2025-11-27 03:44:35] 2025-11-27 08:43:42,089 | INFO     | sum of deviations: 272260613491.07068
[2025-11-27 03:44:35] 2025-11-27 08:43:42,089 | INFO     | mean x: 1764220068.1882353
[2025-11-27 03:44:35] 2025-11-27 08:43:42,090 | INFO     | mean y: 3422420.174117647
[2025-11-27 03:44:35] 2025-11-27 08:43:42,090 | INFO     | intersect: -20175491228.847248
[2025-11-27 03:44:35] 2025-11-27 08:43:42,090 | INFO     | chi2: 6.513908623439128
[2025-11-27 03:44:35] 2025-11-27 08:43:42,091 | INFO     | sum of square deviations: 22973182919.761875
[2025-11-27 03:44:35] 2025-11-27 08:43:42,095 | INFO     | sum of deviations: 440305049826.40485
[2025-11-27 03:44:35] 2025-11-27 08:43:42,095 | INFO     | mean x: 1764219915.6904762
[2025-11-27 03:44:35] 2025-11-27 08:43:42,095 | INFO     | mean y: 3453255.9261904764
[2025-11-27 03:44:35] 2025-11-27 08:43:42,095 | INFO     | intersect: -33809664438.558376
[2025-11-27 03:44:35] 2025-11-27 08:43:42,095 | INFO     | chi2: 3.3104993503939317
[2025-11-27 03:44:35] 2025-11-27 08:43:42,096 | INFO     | current chi2=3.3104993503939317 (change=49.177989103474744 %)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,096 | INFO     | sum of square deviations: 22162457234.57828
[2025-11-27 03:44:35] 2025-11-27 08:43:42,100 | INFO     | sum of deviations: 526905302497.0481
[2025-11-27 03:44:35] 2025-11-27 08:43:42,100 | INFO     | mean x: 1764219763.1927712
[2025-11-27 03:44:35] 2025-11-27 08:43:42,100 | INFO     | mean y: 3469513.3493975904
[2025-11-27 03:44:35] 2025-11-27 08:43:42,100 | INFO     | intersect: -41940288715.13867
[2025-11-27 03:44:35] 2025-11-27 08:43:42,101 | INFO     | chi2: 2.289281906666462
[2025-11-27 03:44:35] 2025-11-27 08:43:42,101 | INFO     | current chi2=2.289281906666462 (change=30.847837007004713 %)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,101 | INFO     | sum of square deviations: 21371034236.890247
[2025-11-27 03:44:35] 2025-11-27 08:43:42,105 | INFO     | sum of deviations: 520895596375.75616
[2025-11-27 03:44:35] 2025-11-27 08:43:42,105 | INFO     | mean x: 1764219610.695122
[2025-11-27 03:44:35] 2025-11-27 08:43:42,105 | INFO     | mean y: 3468343.2780487803
[2025-11-27 03:44:35] 2025-11-27 08:43:42,105 | INFO     | intersect: -42997455994.98001
[2025-11-27 03:44:35] 2025-11-27 08:43:42,106 | INFO     | chi2: 2.2637003846379096
[2025-11-27 03:44:35] 2025-11-27 08:43:42,106 | INFO     | current chi2=2.2637003846379096 (change=1.1174474386076276 %)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,106 | INFO     | right removable region: 409
[2025-11-27 03:44:35] 2025-11-27 08:43:42,106 | INFO     | sum of square deviations: 22973134119.76189
[2025-11-27 03:44:35] 2025-11-27 08:43:42,110 | INFO     | sum of deviations: 143681242822.85706
[2025-11-27 03:44:35] 2025-11-27 08:43:42,110 | INFO     | mean x: 1764220220.6904762
[2025-11-27 03:44:35] 2025-11-27 08:43:42,110 | INFO     | mean y: 3445949.814285714
[2025-11-27 03:44:35] 2025-11-27 08:43:42,110 | INFO     | intersect: -11030544998.071674
[2025-11-27 03:44:35] 2025-11-27 08:43:42,111 | INFO     | chi2: 4.388392414821619
[2025-11-27 03:44:35] 2025-11-27 08:43:42,111 | INFO     | current chi2=4.388392414821619 (change=32.63042715965067 %)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,112 | INFO     | sum of square deviations: 22162410507.33972
[2025-11-27 03:44:35] 2025-11-27 08:43:42,115 | INFO     | sum of deviations: 113167825559.23093
[2025-11-27 03:44:35] 2025-11-27 08:43:42,115 | INFO     | mean x: 1764220373.1879518
[2025-11-27 03:44:35] 2025-11-27 08:43:42,115 | INFO     | mean y: 3451681.7662650603
[2025-11-27 03:44:35] 2025-11-27 08:43:42,116 | INFO     | intersect: -9005179548.79661
[2025-11-27 03:44:35] 2025-11-27 08:43:42,116 | INFO     | chi2: 4.334150693760707
[2025-11-27 03:44:35] 2025-11-27 08:43:42,116 | INFO     | current chi2=4.334150693760707 (change=1.2360271355340349 %)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,116 | INFO     | left removable region: 20
[2025-11-27 03:44:35] 2025-11-27 08:43:42,117 | INFO     | sum of square deviations: 18252547671.922928
[2025-11-27 03:44:35] 2025-11-27 08:43:42,120 | INFO     | sum of deviations: 324302653172.3444
[2025-11-27 03:44:35] 2025-11-27 08:43:42,120 | INFO     | mean x: 1764220190.1902313
[2025-11-27 03:44:35] 2025-11-27 08:43:42,120 | INFO     | mean y: 3506876.616966581
[2025-11-27 03:44:35] 2025-11-27 08:43:42,120 | INFO     | intersect: -31342324880.283974
[2025-11-27 03:44:35] 2025-11-27 08:43:42,121 | INFO     | chi2: 0.029273544781210515
[2025-11-27 03:44:35] 2025-11-27 08:43:42,121 | INFO     | current memory leak: 17.77 B/s (using 389 data points, chi2=0.03)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,121 | INFO     | could have reported an average CPU frequency of 2359 MHz (18 samples)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,121 | INFO     | ..............................
[2025-11-27 03:44:35] 2025-11-27 08:43:42,121 | INFO     | . Timing measurements:
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . get job = 0 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . initial setup = 2 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . payload setup = 7 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . stage-in = 0 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . payload execution = 25879 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . stage-out = 3 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | . log creation = 0 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,122 | INFO     | ..............................
[2025-11-27 03:44:35] 2025-11-27 08:43:42,202 | INFO     | 
[2025-11-27 03:44:35] 2025-11-27 08:43:42,202 | INFO     | job summary report
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | --------------------------------------------------
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | PanDA job id: 6896716157
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | task id: 47556161
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | errors: (none)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | pilot state: finished 
[2025-11-27 03:44:35] 2025-11-27 08:43:42,203 | INFO     | transexitcode: 0
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | exeerrorcode: 0
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | exeerrordiag: 
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | exitcode: 0
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | exitmsg: OK
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | cpuconsumptiontime: 295608 s
[2025-11-27 03:44:35] 2025-11-27 08:43:42,204 | INFO     | nevents: 1000
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | neventsw: 0
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | pid: 31399
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | pgrp: 31399
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | corecount: 12
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | event service: False
[2025-11-27 03:44:35] 2025-11-27 08:43:42,205 | INFO     | sizes: {0: 2284207, 5: 2284469, 11: 2284525, 25890: 2321815, 25894: 2330865, 25899: 2331055}
[2025-11-27 03:44:35] 2025-11-27 08:43:42,206 | INFO     | --------------------------------------------------
[2025-11-27 03:44:35] 2025-11-27 08:43:42,206 | INFO     | 
[2025-11-27 03:44:35] 2025-11-27 08:43:42,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 03:44:35] 2025-11-27 08:43:42,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:44:35] 2025-11-27 08:43:42,232 | INFO     | job 6896716157 has completed (purged errors)
[2025-11-27 03:44:35] 2025-11-27 08:43:42,233 | INFO     | overall cleanup function is called
[2025-11-27 03:44:35] 2025-11-27 08:43:43,247 | INFO     | --- collectZombieJob: --- 10, [31399]
[2025-11-27 03:44:35] 2025-11-27 08:43:43,248 | INFO     | zombie collector waiting for pid 31399
[2025-11-27 03:44:35] 2025-11-27 08:43:43,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:44:35] 2025-11-27 08:43:43,248 | INFO     | collected zombie processes
[2025-11-27 03:44:35] 2025-11-27 08:43:43,248 | INFO     | will attempt to kill all subprocesses of pid=31399
[2025-11-27 03:44:35] 2025-11-27 08:43:43,341 | INFO     | process IDs to be killed: [31399] (in reverse order)
[2025-11-27 03:44:35] 2025-11-27 08:43:43,395 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:44:35] 2025-11-27 08:43:43,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:44:35] 2025-11-27 08:43:43,399 | INFO     | did not find any defunct processes belonging to 31399
[2025-11-27 03:44:35] 2025-11-27 08:43:43,402 | INFO     | did not find any defunct processes belonging to 31399
[2025-11-27 03:44:35] 2025-11-27 08:43:43,405 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:44:35] 2025-11-27 08:43:43,405 | INFO     | ready for new job
[2025-11-27 03:44:35] 2025-11-27 08:43:43,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:44:35] 2025-11-27 08:43:43,407 | INFO     | ***************************************
[2025-11-27 03:44:35] 2025-11-27 08:43:43,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:44:35] 2025-11-27 08:43:43,407 | INFO     | ***************************************
[2025-11-27 03:44:35] 2025-11-27 08:43:43,407 | INFO     | 
[2025-11-27 03:44:35] 2025-11-27 08:43:43,408 | INFO     | architecture information:
[2025-11-27 03:44:35] 2025-11-27 08:43:43,409 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:44:35] 2025-11-27 08:43:43,424 | INFO     | cat /etc/os-release:
[2025-11-27 03:44:35] NAME="CentOS Linux"
[2025-11-27 03:44:35] VERSION="7 (Core)"
[2025-11-27 03:44:35] ID="centos"
[2025-11-27 03:44:35] ID_LIKE="rhel fedora"
[2025-11-27 03:44:35] VERSION_ID="7"
[2025-11-27 03:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:44:35] ANSI_COLOR="0;31"
[2025-11-27 03:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:44:35] HOME_URL="https://www.centos.org/"
[2025-11-27 03:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:44:35] 
[2025-11-27 03:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:44:35] 
[2025-11-27 03:44:35] 2025-11-27 08:43:43,424 | INFO     | ***************************************
[2025-11-27 03:44:35] 2025-11-27 08:43:43,927 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 03:44:35] 2025-11-27 08:43:43,944 | INFO     | sufficient remaining disk space (28387049472 B)
[2025-11-27 03:44:35] 2025-11-27 08:43:43,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:44:35] 2025-11-27 08:43:43,944 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:44:35] 2025-11-27 08:43:43,944 | INFO     | update_server=False
[2025-11-27 03:44:35] 2025-11-27 08:43:43,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:44:35] 2025-11-27 08:43:43,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:44:35] 2025-11-27 08:43:43,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:44:35] 2025-11-27 08:43:43,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:44:35] 2025-11-27 08:43:43,946 | INFO     | aborting loop
[2025-11-27 03:44:35] 2025-11-27 08:43:43,952 | INFO     | all data control threads have been joined
[2025-11-27 03:44:35] 2025-11-27 08:43:44,557 | INFO     | all job control threads have been joined
[2025-11-27 03:44:35] 2025-11-27 08:43:44,814 | INFO     | all payload control threads have been joined
[2025-11-27 03:44:35] 2025-11-27 08:43:44,950 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:44,951 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:44,951 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:44,957 | INFO     | [data] control thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,013 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:44:35] 2025-11-27 08:43:45,092 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,341 | INFO     | [job] validate thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,562 | INFO     | [job] control thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,720 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,819 | INFO     | [payload] control thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,838 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:45,957 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:46,486 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:47,028 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:47,951 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:43:54,027 | INFO     | job.realtimelogging is not enabled
[2025-11-27 03:44:35] 2025-11-27 08:43:55,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:44:35] 2025-11-27 08:44:14,289 | INFO     | PID=24938 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:44:35] 2025-11-27 08:44:14,290 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:44:35] 2025-11-27 08:44:14,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:44:35] 2025-11-27 08:44:14,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:44:35] 2025-11-27 08:44:28,119 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:44:35] 2025-11-27 08:44:29,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995465316160)>', '<ExcThread(monitor, started 139994475763456)>']
[2025-11-27 03:44:35] 2025-11-27 08:44:30,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:44:35] 2025-11-27 08:44:30,368 | INFO     | [monitor] control thread has ended
[2025-11-27 03:44:35] 2025-11-27 08:44:34,890 | INFO     | all workflow threads have been joined
[2025-11-27 03:44:35] 2025-11-27 08:44:34,890 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:44:35] 2025-11-27 08:44:34,891 | INFO     | traces error code: 0
[2025-11-27 03:44:35] 2025-11-27 08:44:34,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:44:35] 2025-11-27 08:44:34,979 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:44:35] 2025-11-27 08:44:34,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:44:35] 2025-11-27 08:44:34,985 [wrapper] pilotpid: 24938
[2025-11-27 03:44:35] 2025-11-27 08:44:34,989 [wrapper] Pilot exit status: 0
[2025-11-27 03:44:35] 2025-11-27 08:44:35,003 [wrapper] pandaids: 6896716157 6896716157
[2025-11-27 03:44:35] 2025-11-27 08:44:35,048 [wrapper] cleanup supervisor_pilot 20332 24939
[2025-11-27 03:44:35] 2025-11-27 08:44:35,052 [wrapper] Test setup, not cleaning
[2025-11-27 03:44:35] 2025-11-27 08:44:35,056 [wrapper] apfmon messages muted
[2025-11-27 03:44:35] 2025-11-27 08:44:35,059 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:44:35] 2025-11-27 08:44:35,063 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:44:35]  *** Error codes and diagnostics ***
[2025-11-27 03:44:35]     "exeErrorCode": 0,
[2025-11-27 03:44:35]     "exeErrorDiag": "",
[2025-11-27 03:44:35]     "pilotErrorCode": 0,
[2025-11-27 03:44:35]     "pilotErrorDiag": "",
[2025-11-27 03:44:35]  *** Listing of results directory ***
[2025-11-27 03:44:35] total 1712940
[2025-11-27 03:44:35] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 02:04 pilot3.tar.gz
[2025-11-27 03:44:35] -rwx------ 1 boincer umatlas     36292 Nov 25 02:23 runpilot2-wrapper.sh
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 02:23 queuedata.json
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas       100 Nov 26 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:44:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 15:01 run_atlas
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas       105 Nov 26 15:01 job.xml
[2025-11-27 03:44:35] -rw-r--r-- 3 boincer umatlas 409909942 Nov 26 15:01 EVNT.47483658._002134.pool.root.1
[2025-11-27 03:44:35] -rw-r--r-- 3 boincer umatlas 409909942 Nov 26 15:01 ATLAS.root_0
[2025-11-27 03:44:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 15:01 start_atlas.sh
[2025-11-27 03:44:35] drwxrwx--x 2 boincer umatlas      4096 Nov 26 15:01 shared
[2025-11-27 03:44:35] -rw-r--r-- 2 boincer umatlas    590094 Nov 26 15:01 input.tar.gz
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas         0 Nov 26 15:01 boinc_lockfile
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas      2781 Nov 26 20:31 pandaJob.out
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas        57 Nov 26 20:31 setup.sh.local
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas    991530 Nov 26 20:31 agis_schedconf.cvmfs.json
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas       532 Nov 27 03:32 boinc_task_state.xml
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 03:36 init_data.xml
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas 918723102 Nov 27 03:43 HITS.47556161._001171.pool.root.1
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas      1061 Nov 27 03:43 memory_monitor_summary.json
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas   1516240 Nov 27 03:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas   2166464 Nov 27 03:43 log.47556161._001171.job.log.tgz.1
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas      8658 Nov 27 03:43 heartbeat.json
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas        96 Nov 27 03:44 pilot_heartbeat.json
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 03:44 boinc_mmap_file
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas        29 Nov 27 03:44 wrapper_checkpoint.txt
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas      4818 Nov 27 03:44 pilotlog.txt
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas   3627430 Nov 27 03:44 log.47556161._001171.job.log.1
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas       353 Nov 27 03:44 output.list
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas       620 Nov 27 03:44 runtime_log
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas   5816320 Nov 27 03:44 result.tar.gz
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas       795 Nov 27 03:44 OAtKDmiZ2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAFMKDmaObKTo.diag
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas      9430 Nov 27 03:44 runtime_log.err
[2025-11-27 03:44:35] -rw-r--r-- 1 boincer umatlas     23236 Nov 27 03:44 stderr.txt
[2025-11-27 03:44:35] HITS file was successfully produced:
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas 918723102 Nov 27 03:43 shared/HITS.pool.root.1
[2025-11-27 03:44:35]  *** Contents of shared directory: ***
[2025-11-27 03:44:35] total 1303776
[2025-11-27 03:44:35] -rw-r--r-- 3 boincer umatlas 409909942 Nov 26 15:01 ATLAS.root_0
[2025-11-27 03:44:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 15:01 start_atlas.sh
[2025-11-27 03:44:35] -rw-r--r-- 2 boincer umatlas    590094 Nov 26 15:01 input.tar.gz
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas 918723102 Nov 27 03:43 HITS.pool.root.1
[2025-11-27 03:44:35] -rw------- 1 boincer umatlas   5816320 Nov 27 03:44 result.tar.gz
03:44:36 (21234): run_atlas exited; CPU time 288755.290342
03:44:36 (21234): called boinc_finish(0)

</stderr_txt>
]]>

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