Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:18:30 (3071217): wrapper (7.7.26015): starting
15:18:30 (3071217): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:18:30] Arguments: --nthreads 8
[2025-11-26 15:18:30] Threads: 8
[2025-11-26 15:18:30] Checking for CVMFS
[2025-11-26 15:18:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:18:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:18:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:18:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:18:53] 2.13.3.0 7558 30521 332928 153334 2 113 31685677 32935936 26779 16776704 0 127339612 99.534 156092022 38377 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:18:53] CVMFS is ok
[2025-11-26 15:18:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:18:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:18:53] Further information can be found at the LHC@home message board.
[2025-11-26 15:18:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:18:53] Checking for apptainer binary...
[2025-11-26 15:18:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:18:53] Running /usr/bin/apptainer --version
[2025-11-26 15:18:53] apptainer version 1.4.4-1.el9
[2025-11-26 15:18:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:18:53] c6-6-39-2.aglt2.org
[2025-11-26 15:18:53] apptainer works
[2025-11-26 15:18:53] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:18:53] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:18:54] Starting ATLAS job with PandaID=6895617905
[2025-11-26 15:18:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:12:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:12:23] 2025-11-27 08:11:33,574 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:12:23] 2025-11-27 08:11:33,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:12:23] 2025-11-27 08:11:33,584 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:12:23] 2025-11-27 08:11:33,585 | INFO     | sum of square deviations: 105458041541.9041
[2025-11-27 03:12:23] 2025-11-27 08:11:33,596 | INFO     | sum of deviations: 1337399960410.1895
[2025-11-27 03:12:23] 2025-11-27 08:11:33,597 | INFO     | mean x: 1764209791.3767908
[2025-11-27 03:12:23] 2025-11-27 08:11:33,597 | INFO     | mean y: 2900834.9498567334
[2025-11-27 03:12:23] 2025-11-27 08:11:33,597 | INFO     | intersect: -22370491185.658184
[2025-11-27 03:12:23] 2025-11-27 08:11:33,598 | INFO     | chi2: 11.966437500336681
[2025-11-27 03:12:23] 2025-11-27 08:11:33,599 | INFO     | sum of square deviations: 103208529121.6652
[2025-11-27 03:12:23] 2025-11-27 08:11:33,608 | INFO     | sum of deviations: 1587928847114.6145
[2025-11-27 03:12:23] 2025-11-27 08:11:33,608 | INFO     | mean x: 1764209638.890332
[2025-11-27 03:12:23] 2025-11-27 08:11:33,608 | INFO     | mean y: 2917817.7186147184
[2025-11-27 03:12:23] 2025-11-27 08:11:33,608 | INFO     | intersect: -27140569273.82977
[2025-11-27 03:12:23] 2025-11-27 08:11:33,609 | INFO     | chi2: 8.473442247850366
[2025-11-27 03:12:23] 2025-11-27 08:11:33,609 | INFO     | current chi2=8.473442247850366 (change=29.18993436758465 %)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,610 | INFO     | sum of square deviations: 100991039240.673
[2025-11-27 03:12:23] 2025-11-27 08:11:33,619 | INFO     | sum of deviations: 1672011130114.045
[2025-11-27 03:12:23] 2025-11-27 08:11:33,619 | INFO     | mean x: 1764209486.3968024
[2025-11-27 03:12:23] 2025-11-27 08:11:33,619 | INFO     | mean y: 2923570.8386627906
[2025-11-27 03:12:23] 2025-11-27 08:11:33,619 | INFO     | intersect: -29205389555.621838
[2025-11-27 03:12:23] 2025-11-27 08:11:33,620 | INFO     | chi2: 7.374668470076574
[2025-11-27 03:12:23] 2025-11-27 08:11:33,620 | INFO     | current chi2=7.374668470076574 (change=12.967265789207936 %)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,620 | INFO     | right removable region: 687
[2025-11-27 03:12:23] 2025-11-27 08:11:33,621 | INFO     | sum of square deviations: 103207730021.66527
[2025-11-27 03:12:23] 2025-11-27 08:11:33,630 | INFO     | sum of deviations: 1055438610045.7725
[2025-11-27 03:12:23] 2025-11-27 08:11:33,631 | INFO     | mean x: 1764209943.890332
[2025-11-27 03:12:23] 2025-11-27 08:11:33,631 | INFO     | mean y: 2919939.3391053393
[2025-11-27 03:12:23] 2025-11-27 08:11:33,631 | INFO     | intersect: -18038512525.2415
[2025-11-27 03:12:23] 2025-11-27 08:11:33,632 | INFO     | chi2: 7.735109375045316
[2025-11-27 03:12:23] 2025-11-27 08:11:33,632 | INFO     | current chi2=7.735109375045316 (change=35.359965112192455 %)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,633 | INFO     | sum of square deviations: 100989651663.66853
[2025-11-27 03:12:23] 2025-11-27 08:11:33,641 | INFO     | sum of deviations: 826470222710.5806
[2025-11-27 03:12:23] 2025-11-27 08:11:33,642 | INFO     | mean x: 1764210096.4040697
[2025-11-27 03:12:23] 2025-11-27 08:11:33,642 | INFO     | mean y: 2935675.7209302327
[2025-11-27 03:12:23] 2025-11-27 08:11:33,642 | INFO     | intersect: -14434851634.79687
[2025-11-27 03:12:23] 2025-11-27 08:11:33,643 | INFO     | chi2: 5.075085512043936
[2025-11-27 03:12:23] 2025-11-27 08:11:33,643 | INFO     | current chi2=5.075085512043936 (change=34.38896250883067 %)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,644 | INFO     | sum of square deviations: 98803699451.9035
[2025-11-27 03:12:23] 2025-11-27 08:11:33,653 | INFO     | sum of deviations: 756737069156.3108
[2025-11-27 03:12:23] 2025-11-27 08:11:33,653 | INFO     | mean x: 1764210248.9136164
[2025-11-27 03:12:23] 2025-11-27 08:11:33,653 | INFO     | mean y: 2940531.4289897513
[2025-11-27 03:12:23] 2025-11-27 08:11:33,653 | INFO     | intersect: -13509137463.062494
[2025-11-27 03:12:23] 2025-11-27 08:11:33,654 | INFO     | chi2: 4.8282922538107975
[2025-11-27 03:12:23] 2025-11-27 08:11:33,654 | INFO     | current chi2=4.8282922538107975 (change=4.862839407286064 %)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,654 | INFO     | left removable region: 30
[2025-11-27 03:12:23] 2025-11-27 08:11:33,655 | INFO     | sum of square deviations: 87945736594.77928
[2025-11-27 03:12:23] 2025-11-27 08:11:33,663 | INFO     | sum of deviations: 1007398261107.4423
[2025-11-27 03:12:23] 2025-11-27 08:11:33,663 | INFO     | mean x: 1764210370.9299848
[2025-11-27 03:12:23] 2025-11-27 08:11:33,664 | INFO     | mean y: 2970088.292237443
[2025-11-27 03:12:23] 2025-11-27 08:11:33,664 | INFO     | intersect: -20205655465.571007
[2025-11-27 03:12:23] 2025-11-27 08:11:33,664 | INFO     | chi2: 0.06523090241678219
[2025-11-27 03:12:23] 2025-11-27 08:11:33,665 | INFO     | current memory leak: 11.45 B/s (using 657 data points, chi2=0.07)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,665 | INFO     | could have reported an average CPU frequency of 2905 MHz (27 samples)
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | ..............................
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . Timing measurements:
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . get job = 0 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . initial setup = 4 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . payload setup = 35 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . stage-in = 0 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . payload execution = 42575 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . stage-out = 3 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | . log creation = 0 s
[2025-11-27 03:12:23] 2025-11-27 08:11:33,666 | INFO     | ..............................
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | 
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | job summary report
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | --------------------------------------------------
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | PanDA job id: 6895617905
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | task id: 47556149
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | errors: (none)
[2025-11-27 03:12:23] 2025-11-27 08:11:34,132 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | pilot state: finished 
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | transexitcode: 0
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | exeerrorcode: 0
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | exeerrordiag: 
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | exitcode: 0
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | exitmsg: OK
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | cpuconsumptiontime: 235126 s
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | nevents: 1000
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | neventsw: 0
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | pid: 3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | pgrp: 3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | corecount: 8
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | event service: False
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 32: 2284717, 34: 2284873, 42614: 2330739, 42619: 2339789, 42628: 2339979}
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | --------------------------------------------------
[2025-11-27 03:12:23] 2025-11-27 08:11:34,133 | INFO     | 
[2025-11-27 03:12:23] 2025-11-27 08:11:34,134 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 03:12:23] 2025-11-27 08:11:34,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | job 6895617905 has completed (purged errors)
[2025-11-27 03:12:23] 2025-11-27 08:11:34,198 | INFO     | overall cleanup function is called
[2025-11-27 03:12:23] 2025-11-27 08:11:35,220 | INFO     | --- collectZombieJob: --- 10, [3093841]
[2025-11-27 03:12:23] 2025-11-27 08:11:35,220 | INFO     | zombie collector waiting for pid 3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:35,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:12:23] 2025-11-27 08:11:35,220 | INFO     | collected zombie processes
[2025-11-27 03:12:23] 2025-11-27 08:11:35,220 | INFO     | will attempt to kill all subprocesses of pid=3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:35,674 | INFO     | process IDs to be killed: [3093841] (in reverse order)
[2025-11-27 03:12:23] 2025-11-27 08:11:35,826 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:12:23] 2025-11-27 08:11:35,826 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:12:23] 2025-11-27 08:11:35,851 | INFO     | did not find any defunct processes belonging to 3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:35,868 | INFO     | did not find any defunct processes belonging to 3093841
[2025-11-27 03:12:23] 2025-11-27 08:11:35,869 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:12:23] 2025-11-27 08:11:35,870 | INFO     | ready for new job
[2025-11-27 03:12:23] 2025-11-27 08:11:35,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:12:23] 2025-11-27 08:11:35,873 | INFO     | ***************************************
[2025-11-27 03:12:23] 2025-11-27 08:11:35,874 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:12:23] 2025-11-27 08:11:35,874 | INFO     | ***************************************
[2025-11-27 03:12:23] 2025-11-27 08:11:35,874 | INFO     | 
[2025-11-27 03:12:23] 2025-11-27 08:11:35,877 | INFO     | architecture information:
[2025-11-27 03:12:23] 2025-11-27 08:11:35,878 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:12:23] 2025-11-27 08:11:35,895 | INFO     | cat /etc/os-release:
[2025-11-27 03:12:23] NAME="CentOS Linux"
[2025-11-27 03:12:23] VERSION="7 (Core)"
[2025-11-27 03:12:23] ID="centos"
[2025-11-27 03:12:23] ID_LIKE="rhel fedora"
[2025-11-27 03:12:23] VERSION_ID="7"
[2025-11-27 03:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:12:23] ANSI_COLOR="0;31"
[2025-11-27 03:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:12:23] HOME_URL="https://www.centos.org/"
[2025-11-27 03:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:12:23] 
[2025-11-27 03:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:12:23] 
[2025-11-27 03:12:23] 2025-11-27 08:11:35,896 | INFO     | ***************************************
[2025-11-27 03:12:23] 2025-11-27 08:11:36,400 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 03:12:23] 2025-11-27 08:11:36,416 | INFO     | sufficient remaining disk space (69049778176 B)
[2025-11-27 03:12:23] 2025-11-27 08:11:36,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:12:23] 2025-11-27 08:11:36,417 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:12:23] 2025-11-27 08:11:36,417 | INFO     | update_server=False
[2025-11-27 03:12:23] 2025-11-27 08:11:36,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:12:23] 2025-11-27 08:11:36,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:12:23] 2025-11-27 08:11:36,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:12:23] 2025-11-27 08:11:36,418 | INFO     | aborting loop
[2025-11-27 03:12:23] 2025-11-27 08:11:36,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:12:23] 2025-11-27 08:11:36,858 | INFO     | all data control threads have been joined
[2025-11-27 03:12:23] 2025-11-27 08:11:37,268 | INFO     | all payload control threads have been joined
[2025-11-27 03:12:23] 2025-11-27 08:11:37,423 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,438 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,642 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,763 | INFO     | [job] validate thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,794 | INFO     | all job control threads have been joined
[2025-11-27 03:12:23] 2025-11-27 08:11:37,864 | INFO     | [data] control thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:37,918 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,274 | INFO     | [payload] control thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,331 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,425 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:12:23] 2025-11-27 08:11:38,799 | INFO     | [job] control thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,887 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:38,918 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:39,773 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:11:40,427 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:12:23] 2025-11-27 08:12:06,182 | INFO     | PID=3078056 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:12:23] 2025-11-27 08:12:06,183 | INFO     | .. there are 38 such processes running
[2025-11-27 03:12:23] 2025-11-27 08:12:06,183 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:12:23] 2025-11-27 08:12:06,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:12:23] 2025-11-27 08:12:06,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:12:23] 2025-11-27 08:12:16,621 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:12:23] 2025-11-27 08:12:17,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411187398464)>', '<ExcThread(monitor, started 140410701723392)>']
[2025-11-27 03:12:23] 2025-11-27 08:12:18,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:12:23] 2025-11-27 08:12:18,254 | INFO     | [monitor] control thread has ended
[2025-11-27 03:12:23] 2025-11-27 08:12:22,832 | INFO     | all workflow threads have been joined
[2025-11-27 03:12:23] 2025-11-27 08:12:22,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:12:23] 2025-11-27 08:12:22,832 | INFO     | traces error code: 0
[2025-11-27 03:12:23] 2025-11-27 08:12:22,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:12:23] 2025-11-27 08:12:23,002 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:12:23] 2025-11-27 08:12:23,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:12:23] 2025-11-27 08:12:23,008 [wrapper] pilotpid: 3078056
[2025-11-27 03:12:23] 2025-11-27 08:12:23,010 [wrapper] Pilot exit status: 0
[2025-11-27 03:12:23] 2025-11-27 08:12:23,023 [wrapper] pandaids: 6895617905
[2025-11-27 03:12:23] 2025-11-27 08:12:23,104 [wrapper] cleanup supervisor_pilot 1629648 3078057
[2025-11-27 03:12:23] 2025-11-27 08:12:23,109 [wrapper] Test setup, not cleaning
[2025-11-27 03:12:23] 2025-11-27 08:12:23,112 [wrapper] apfmon messages muted
[2025-11-27 03:12:23] 2025-11-27 08:12:23,114 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:12:23] 2025-11-27 08:12:23,117 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:12:23]  *** Error codes and diagnostics ***
[2025-11-27 03:12:23]     "exeErrorCode": 0,
[2025-11-27 03:12:23]     "exeErrorDiag": "",
[2025-11-27 03:12:23]     "pilotErrorCode": 0,
[2025-11-27 03:12:23]     "pilotErrorDiag": "",
[2025-11-27 03:12:23]  *** Listing of results directory ***
[2025-11-27 03:12:23] total 1304036
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 06:12 pilot3.tar.gz
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 06:21 queuedata.json
[2025-11-27 03:12:23] -rwx------. 1 boincer umatlas     36292 Nov 24 06:23 runpilot2-wrapper.sh
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:12:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:18 run_atlas
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:18 job.xml
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas 409520896 Nov 26 15:18 EVNT.47483658._001324.pool.root.1
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:18 start_atlas.sh
[2025-11-27 03:12:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:18 shared
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 15:18 input.tar.gz
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:18 boinc_lockfile
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 15:18 pandaJob.out
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas        57 Nov 26 15:18 setup.sh.local
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas    991538 Nov 26 15:19 agis_schedconf.cvmfs.json
[2025-11-27 03:12:23] drwx------. 5 boincer umatlas      4096 Nov 26 15:20 pilot3
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 03:02 boinc_task_state.xml
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 03:09 init_data.xml
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas 906565843 Nov 27 03:10 HITS.47556149._003103.pool.root.1
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas      1056 Nov 27 03:11 memory_monitor_summary.json
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:11 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas   1941630 Nov 27 03:11 log.47556149._003103.job.log.tgz.1
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas      8621 Nov 27 03:11 heartbeat.json
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas        95 Nov 27 03:12 pilot_heartbeat.json
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:12 boinc_mmap_file
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:12 wrapper_checkpoint.txt
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas      4824 Nov 27 03:12 pilotlog.txt
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas   5721683 Nov 27 03:12 log.47556149._003103.job.log.1
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas       353 Nov 27 03:12 output.list
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:12 runtime_log
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas   7680000 Nov 27 03:12 result.tar.gz
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 03:12 runtime_log.err
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas       661 Nov 27 03:12 2ceLDmdqjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwdLKDmr3ZLDn.diag
[2025-11-27 03:12:23] -rw-r--r--. 1 boincer umatlas     21157 Nov 27 03:12 stderr.txt
[2025-11-27 03:12:23] HITS file was successfully produced:
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas 906565843 Nov 27 03:10 shared/HITS.pool.root.1
[2025-11-27 03:12:23]  *** Contents of shared directory: ***
[2025-11-27 03:12:23] total 1293348
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas 409520896 Nov 26 15:18 ATLAS.root_0
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:18 start_atlas.sh
[2025-11-27 03:12:23] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 15:18 input.tar.gz
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas 906565843 Nov 27 03:10 HITS.pool.root.1
[2025-11-27 03:12:23] -rw-------. 1 boincer umatlas   7680000 Nov 27 03:12 result.tar.gz
03:12:24 (3071217): run_atlas exited; CPU time 236135.010351
03:12:24 (3071217): called boinc_finish(0)

</stderr_txt>
]]>

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