Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:06:56 (26893): wrapper (7.7.26015): starting
20:06:56 (26893): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 20:06:56] Arguments: --nthreads 8
[2025-11-28 20:06:56] Threads: 8
[2025-11-28 20:06:56] Checking for CVMFS
[2025-11-28 20:06:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 20:06:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 20:06:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 20:06:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 20:06:59] 2.11.2.0 31738 288484 138496 153416 3 13 22531656 25165825 2358 130560 10 124039087 99.872 81078406 2798 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 20:06:59] CVMFS is ok
[2025-11-28 20:06:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 20:06:59] Checking for apptainer binary...
[2025-11-28 20:06:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 20:06:59] Running /usr/bin/apptainer --version
[2025-11-28 20:06:59] apptainer version 1.3.2-1.el7
[2025-11-28 20:06:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 20:07:05] cg-vwn375.simple-grid.lan
[2025-11-28 20:07:05] apptainer works
[2025-11-28 20:07:06] Set ATHENA_PROC_NUMBER=8
[2025-11-28 20:07:06] Set ATHENA_CORE_NUMBER=8
[2025-11-28 20:07:06] Starting ATLAS job with PandaID=6897880962
[2025-11-28 20:07:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 19:55:38]  *** The last 200 lines of the pilot log: ***
[2025-11-29 19:55:38] 2025-11-29 18:54:53,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 19:55:38] 2025-11-29 18:54:54,745 | INFO     | time since job start (85438s) is within the limit (172800.0s)
[2025-11-29 19:55:38] 2025-11-29 18:54:56,137 | INFO     | monitor loop #5744: job 0:6897880962 is in state 'finished'
[2025-11-29 19:55:38] 2025-11-29 18:54:56,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 19:55:38] 2025-11-29 18:54:56,752 | INFO     | time since job start (85440s) is within the limit (172800.0s)
[2025-11-29 19:55:38] 2025-11-29 18:54:58,647 | INFO     | monitor loop #5745: job 0:6897880962 is in state 'finished'
[2025-11-29 19:55:38] 2025-11-29 18:54:58,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 19:55:38] 2025-11-29 18:54:58,763 | INFO     | time since job start (85442s) is within the limit (172800.0s)
[2025-11-29 19:55:38] 2025-11-29 18:55:00,778 | INFO     | time since job start (85444s) is within the limit (172800.0s)
[2025-11-29 19:55:38] 2025-11-29 18:55:01,155 | INFO     | monitor loop #5746: job 0:6897880962 is in state 'finished'
[2025-11-29 19:55:38] 2025-11-29 18:55:01,155 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 19:55:38] 2025-11-29 18:55:02,023 | INFO     | PID=30722 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 19:55:38] 2025-11-29 18:55:02,023 | INFO     | .. there are 9 such processes running
[2025-11-29 19:55:38] 2025-11-29 18:55:03,028 | INFO     | time since job start (85447s) is within the limit (172800.0s)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,345 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 19:55:38] 2025-11-29 18:55:03,346 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 19:55:38] 2025-11-29 18:55:03,348 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6897880962/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,348 | INFO     | extracted standard info from prmon json
[2025-11-29 19:55:38] 2025-11-29 18:55:03,348 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 19:55:38] 2025-11-29 18:55:03,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 19:55:38] 2025-11-29 18:55:03,379 | INFO     | fitting pss+swap vs Time
[2025-11-29 19:55:38] 2025-11-29 18:55:03,381 | INFO     | sum of square deviations: 834564872483.0927
[2025-11-29 19:55:38] 2025-11-29 18:55:03,458 | INFO     | sum of deviations: 2958991766634.3174
[2025-11-29 19:55:38] 2025-11-29 18:55:03,459 | INFO     | mean x: 1764399952.1035225
[2025-11-29 19:55:38] 2025-11-29 18:55:03,459 | INFO     | mean y: 2848024.365923796
[2025-11-29 19:55:38] 2025-11-29 18:55:03,459 | INFO     | intersect: -6252920824.124731
[2025-11-29 19:55:38] 2025-11-29 18:55:03,461 | INFO     | chi2: 20.103939830588228
[2025-11-29 19:55:38] 2025-11-29 18:55:03,463 | INFO     | sum of square deviations: 825598037634.4823
[2025-11-29 19:55:38] 2025-11-29 18:55:03,513 | INFO     | sum of deviations: 3422277674142.992
[2025-11-29 19:55:38] 2025-11-29 18:55:03,514 | INFO     | mean x: 1764399799.6075037
[2025-11-29 19:55:38] 2025-11-29 18:55:03,514 | INFO     | mean y: 2855902.6544011543
[2025-11-29 19:55:38] 2025-11-29 18:55:03,514 | INFO     | intersect: -7310952715.108394
[2025-11-29 19:55:38] 2025-11-29 18:55:03,516 | INFO     | chi2: 16.88190234507942
[2025-11-29 19:55:38] 2025-11-29 18:55:03,516 | INFO     | current chi2=16.88190234507942 (change=16.026895785901942 %)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,516 | INFO     | right removable region: 1385
[2025-11-29 19:55:38] 2025-11-29 18:55:03,518 | INFO     | sum of square deviations: 825597101284.4817
[2025-11-29 19:55:38] 2025-11-29 18:55:03,583 | INFO     | sum of deviations: 2381437584222.045
[2025-11-29 19:55:38] 2025-11-29 18:55:03,583 | INFO     | mean x: 1764400104.6075037
[2025-11-29 19:55:38] 2025-11-29 18:55:03,583 | INFO     | mean y: 2857845.2077922076
[2025-11-29 19:55:38] 2025-11-29 18:55:03,583 | INFO     | intersect: -5086560124.1387
[2025-11-29 19:55:38] 2025-11-29 18:55:03,585 | INFO     | chi2: 15.53389575961088
[2025-11-29 19:55:38] 2025-11-29 18:55:03,585 | INFO     | current chi2=15.53389575961088 (change=22.732081917714492 %)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,585 | INFO     | left removable region: 10
[2025-11-29 19:55:38] 2025-11-29 18:55:03,587 | INFO     | sum of square deviations: 806095722283.3883
[2025-11-29 19:55:38] 2025-11-29 18:55:03,637 | INFO     | sum of deviations: 2477150758009.9443
[2025-11-29 19:55:38] 2025-11-29 18:55:03,638 | INFO     | mean x: 1764400074.1163635
[2025-11-29 19:55:38] 2025-11-29 18:55:03,638 | INFO     | mean y: 2875838.469090909
[2025-11-29 19:55:38] 2025-11-29 18:55:03,638 | INFO     | intersect: -5419166308.894655
[2025-11-29 19:55:38] 2025-11-29 18:55:03,640 | INFO     | chi2: 8.446372191842011
[2025-11-29 19:55:38] 2025-11-29 18:55:03,640 | INFO     | current memory leak: 3.07 B/s (using 1375 data points, chi2=8.45)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,641 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,641 | INFO     | ..............................
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . Timing measurements:
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . get job = 0 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . initial setup = 7 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . payload setup = 151 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . stage-in = 0 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . payload execution = 85006 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . stage-out = 5 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | . log creation = 2 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,642 | INFO     | ..............................
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | 
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | job summary report
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | --------------------------------------------------
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | PanDA job id: 6897880962
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | task id: 47556161
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | errors: (none)
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | pilot state: finished 
[2025-11-29 19:55:38] 2025-11-29 18:55:03,799 | INFO     | transexitcode: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | exeerrorcode: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | exeerrordiag: 
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | exitcode: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | exitmsg: OK
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | cpuconsumptiontime: 320489 s
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | nevents: 1000
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | neventsw: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | pid: 5019
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | pgrp: 5019
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | corecount: 8
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | event service: False
[2025-11-29 19:55:38] 2025-11-29 18:55:03,800 | INFO     | sizes: {0: 2284265, 1: 2284293, 11: 2284293, 22: 2284321, 33: 2284349, 44: 2284405, 54: 2284561, 65: 2284589, 76: 2284617, 87: 2284673, 97: 2285271, 85161: 2346058
[2025-11-29 19:55:38] 2025-11-29 18:55:03,801 | INFO     | --------------------------------------------------
[2025-11-29 19:55:38] 2025-11-29 18:55:03,801 | INFO     | 
[2025-11-29 19:55:38] 2025-11-29 18:55:03,801 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 19:55:38] 2025-11-29 18:55:04,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,218 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 19:55:38] 2025-11-29 18:55:04,218 | INFO     | job 6897880962 has completed (purged errors)
[2025-11-29 19:55:38] 2025-11-29 18:55:04,218 | INFO     | overall cleanup function is called
[2025-11-29 19:55:38] 2025-11-29 18:55:05,237 | INFO     | --- collectZombieJob: --- 10, [5019]
[2025-11-29 19:55:38] 2025-11-29 18:55:05,237 | INFO     | zombie collector waiting for pid 5019
[2025-11-29 19:55:38] 2025-11-29 18:55:05,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 19:55:38] 2025-11-29 18:55:05,237 | INFO     | collected zombie processes
[2025-11-29 19:55:38] 2025-11-29 18:55:05,237 | INFO     | will attempt to kill all subprocesses of pid=5019
[2025-11-29 19:55:38] 2025-11-29 18:55:05,351 | INFO     | process IDs to be killed: [5019] (in reverse order)
[2025-11-29 19:55:38] 2025-11-29 18:55:05,821 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 19:55:38] 2025-11-29 18:55:05,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 19:55:38] 2025-11-29 18:55:05,825 | INFO     | did not find any defunct processes belonging to 5019
[2025-11-29 19:55:38] 2025-11-29 18:55:05,828 | INFO     | did not find any defunct processes belonging to 5019
[2025-11-29 19:55:38] 2025-11-29 18:55:05,877 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 19:55:38] 2025-11-29 18:55:05,877 | INFO     | ready for new job
[2025-11-29 19:55:38] 2025-11-29 18:55:05,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 19:55:38] 2025-11-29 18:55:05,883 | INFO     | ***************************************
[2025-11-29 19:55:38] 2025-11-29 18:55:05,883 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 19:55:38] 2025-11-29 18:55:05,883 | INFO     | ***************************************
[2025-11-29 19:55:38] 2025-11-29 18:55:05,884 | INFO     | 
[2025-11-29 19:55:38] 2025-11-29 18:55:05,884 | INFO     | pilot is running in a VM
[2025-11-29 19:55:38] 2025-11-29 18:55:05,884 | INFO     | architecture information:
[2025-11-29 19:55:38] 2025-11-29 18:55:05,892 | INFO     | executing command: cat /etc/os-release
[2025-11-29 19:55:38] 2025-11-29 18:55:06,153 | INFO     | cat /etc/os-release:
[2025-11-29 19:55:38] NAME="CentOS Linux"
[2025-11-29 19:55:38] VERSION="7 (Core)"
[2025-11-29 19:55:38] ID="centos"
[2025-11-29 19:55:38] ID_LIKE="rhel fedora"
[2025-11-29 19:55:38] VERSION_ID="7"
[2025-11-29 19:55:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 19:55:38] ANSI_COLOR="0;31"
[2025-11-29 19:55:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 19:55:38] HOME_URL="https://www.centos.org/"
[2025-11-29 19:55:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 19:55:38] 
[2025-11-29 19:55:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 19:55:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 19:55:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 19:55:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 19:55:38] 
[2025-11-29 19:55:38] 2025-11-29 18:55:06,153 | INFO     | ***************************************
[2025-11-29 19:55:38] 2025-11-29 18:55:06,657 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-29 19:55:38] 2025-11-29 18:55:06,918 | INFO     | sufficient remaining disk space (487920238592 B)
[2025-11-29 19:55:38] 2025-11-29 18:55:06,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 19:55:38] 2025-11-29 18:55:06,918 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 19:55:38] 2025-11-29 18:55:06,918 | INFO     | update_server=False
[2025-11-29 19:55:38] 2025-11-29 18:55:06,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 19:55:38] 2025-11-29 18:55:06,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 19:55:38] 2025-11-29 18:55:07,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 19:55:38] 2025-11-29 18:55:07,182 | INFO     | aborting loop
[2025-11-29 19:55:38] 2025-11-29 18:55:07,404 | INFO     | all data control threads have been joined
[2025-11-29 19:55:38] 2025-11-29 18:55:07,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 19:55:38] 2025-11-29 18:55:07,924 | INFO     | [job] retrieve thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:07,952 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:07,962 | INFO     | [data] copytool_in thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,141 | INFO     | all job control threads have been joined
[2025-11-29 19:55:38] 2025-11-29 18:55:08,188 | INFO     | [job] job monitor thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,230 | INFO     | all payload control threads have been joined
[2025-11-29 19:55:38] 2025-11-29 18:55:08,409 | INFO     | [data] control thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,447 | INFO     | [payload] validate_post thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,702 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 19:55:38] 2025-11-29 18:55:08,846 | INFO     | [payload] failed_post thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,873 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,928 | INFO     | [data] copytool_out thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:08,953 | INFO     | [job] validate thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:09,147 | INFO     | [job] control thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:09,236 | INFO     | [payload] control thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:09,834 | INFO     | [job] queue monitor thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:11,579 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 19:55:38] 2025-11-29 18:55:24,892 | INFO     | [monitor] cgroup control has ended
[2025-11-29 19:55:38] 2025-11-29 18:55:24,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901669492544)>', '<ExcThread(monitor, started 139901077010176)>']
[2025-11-29 19:55:38] 2025-11-29 18:55:29,961 | INFO     | all workflow threads have been joined
[2025-11-29 19:55:38] 2025-11-29 18:55:29,961 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 19:55:38] 2025-11-29 18:55:29,961 | INFO     | traces error code: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:29,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 19:55:38] 2025-11-29 18:55:35,040 | INFO     | 85456s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-29 19:55:38] 2025-11-29 18:55:36,172 | INFO     | PID=30722 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 19:55:38] 2025-11-29 18:55:36,172 | INFO     | .. there are 9 such processes running
[2025-11-29 19:55:38] 2025-11-29 18:55:36,172 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 19:55:38] 2025-11-29 18:55:36,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 19:55:38] 2025-11-29 18:55:36,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 19:55:38] 2025-11-29 18:55:36,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 19:55:38] 2025-11-29 18:55:36,173 | CRITICAL | thread 'MainThread' is not alive
[2025-11-29 19:55:38] 2025-11-29 18:55:36,173 | INFO     | [monitor] control thread has ended
[2025-11-29 19:55:38] 2025-11-29 18:55:36,559 [wrapper] ==== pilot stdout END ====
[2025-11-29 19:55:38] 2025-11-29 18:55:36,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 19:55:38] 2025-11-29 18:55:36,738 [wrapper] pilotpid: 30722
[2025-11-29 19:55:38] 2025-11-29 18:55:36,810 [wrapper] Pilot exit status: 0
[2025-11-29 19:55:38] 2025-11-29 18:55:37,238 [wrapper] pandaids: 6897880962
[2025-11-29 19:55:38] 2025-11-29 18:55:37,849 [wrapper] cleanup supervisor_pilot 25794 30723
[2025-11-29 19:55:38] 2025-11-29 18:55:37,890 [wrapper] Test setup, not cleaning
[2025-11-29 19:55:38] 2025-11-29 18:55:37,960 [wrapper] apfmon messages muted
[2025-11-29 19:55:38] 2025-11-29 18:55:38,005 [wrapper] ==== wrapper stdout END ====
[2025-11-29 19:55:38] 2025-11-29 18:55:38,066 [wrapper] ==== wrapper stderr END ====
[2025-11-29 19:55:38]  *** Error codes and diagnostics ***
[2025-11-29 19:55:39]     "exeErrorCode": 0,
[2025-11-29 19:55:39]     "exeErrorDiag": "",
[2025-11-29 19:55:39]     "pilotErrorCode": 0,
[2025-11-29 19:55:39]     "pilotErrorDiag": "",
[2025-11-29 19:55:39]  *** Listing of results directory ***
[2025-11-29 19:55:39] total 1322536
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-29 19:55:39] -rwx------. 1 boinc boinc     36292 Nov 25 18:02 runpilot2-wrapper.sh
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc       100 Nov 28 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 19:55:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 20:06 run_atlas
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc       105 Nov 28 20:06 job.xml
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc 408123548 Nov 28 20:06 EVNT.47483658._002353.pool.root.1
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc      6392 Nov 28 20:06 init_data.xml
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc     15847 Nov 28 20:06 start_atlas.sh
[2025-11-29 19:55:39] drwxrwx--x. 2 boinc boinc        68 Nov 28 20:06 shared
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc    590106 Nov 28 20:06 input.tar.gz
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc         0 Nov 28 20:06 boinc_lockfile
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc      2786 Nov 28 20:07 pandaJob.out
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc    991818 Nov 28 20:10 agis_schedconf.cvmfs.json
[2025-11-29 19:55:39] drwx------. 5 boinc boinc      4096 Nov 28 20:10 pilot3
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc       533 Nov 29 19:31 boinc_task_state.xml
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc 914571543 Nov 29 19:51 HITS.47556161._003356.pool.root.1
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc      1028 Nov 29 19:53 memory_monitor_summary.json
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc   1516240 Nov 29 19:53 agis_ddmendpoints.agis.ALL.json
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc   2475542 Nov 29 19:53 log.47556161._003356.job.log.tgz.1
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc        95 Nov 29 19:55 pilot_heartbeat.json
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc      8628 Nov 29 19:55 heartbeat.json
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc        29 Nov 29 19:55 wrapper_checkpoint.txt
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc      8192 Nov 29 19:55 boinc_mmap_file
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc      1006 Nov 29 19:55 pilotlog.txt
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc  11362464 Nov 29 19:55 log.47556161._003356.job.log.1
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc       353 Nov 29 19:55 output.list
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc       620 Nov 29 19:55 runtime_log
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc  13854720 Nov 29 19:55 result.tar.gz
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc       662 Nov 29 19:55 JMVMDmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbeMKDmFEFV3m.diag
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc      8817 Nov 29 19:55 runtime_log.err
[2025-11-29 19:55:39] -rw-r--r--. 1 boinc boinc     21482 Nov 29 19:55 stderr.txt
[2025-11-29 19:55:39] HITS file was successfully produced:
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc 914571543 Nov 29 19:51 shared/HITS.pool.root.1
[2025-11-29 19:55:39]  *** Contents of shared directory: ***
[2025-11-29 19:55:39] total 1305828
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc 408123548 Nov 28 20:06 ATLAS.root_0
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc     15847 Nov 28 20:06 start_atlas.sh
[2025-11-29 19:55:39] -rw-r--r--. 2 boinc boinc    590106 Nov 28 20:06 input.tar.gz
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc 914571543 Nov 29 19:51 HITS.pool.root.1
[2025-11-29 19:55:39] -rw-------. 1 boinc boinc  13854720 Nov 29 19:55 result.tar.gz
19:55:40 (26893): run_atlas exited; CPU time 321102.013276
19:55:40 (26893): called boinc_finish(0)

</stderr_txt>
]]>

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