Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:02:51 (3834473): wrapper (7.7.26015): starting
16:02:51 (3834473): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:02:51] Arguments: --nthreads 8
[2025-11-26 16:02:51] Threads: 8
[2025-11-26 16:02:51] Checking for CVMFS
[2025-11-26 16:02:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:02:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:02:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:02:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:02:52] 2.13.2.0 8544 34892 177880 153334 0 409 34360367 40960001 17087 16776704 0 74329063 99.789 41658935 40227 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:02:52] CVMFS is ok
[2025-11-26 16:02:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:02:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:02:52] Further information can be found at the LHC@home message board.
[2025-11-26 16:02:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:02:52] Checking for apptainer binary...
[2025-11-26 16:02:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:02:52] Running /usr/bin/apptainer --version
[2025-11-26 16:02:52] apptainer version 1.4.4-1.el9
[2025-11-26 16:02:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:02:52] c-212-10.aglt2.org
[2025-11-26 16:02:52] apptainer works
[2025-11-26 16:02:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:02:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:02:52] Starting ATLAS job with PandaID=6897864984
[2025-11-26 16:02:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:42:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:42:48] 2025-11-27 21:42:07,841 | INFO     | monitor loop #5717: job 0:6897864984 is in state 'finished'
[2025-11-27 16:42:48] 2025-11-27 21:42:07,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:42:48] 2025-11-27 21:42:08,651 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 16:42:48] 2025-11-27 21:42:08,657 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2931.5309687500007
[2025-11-27 16:42:48] 2025-11-27 21:42:08,672 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897864984/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:42:48] 2025-11-27 21:42:08,673 | INFO     | extracted standard info from prmon json
[2025-11-27 16:42:48] 2025-11-27 21:42:08,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:42:48] 2025-11-27 21:42:08,673 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:42:48] 2025-11-27 21:42:08,717 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:42:48] 2025-11-27 21:42:08,719 | INFO     | sum of square deviations: 953203109412.7948
[2025-11-27 16:42:48] 2025-11-27 21:42:08,733 | INFO     | time since job start (88743s) is within the limit (172800.0s)
[2025-11-27 16:42:48] 2025-11-27 21:42:08,809 | INFO     | sum of deviations: 5322659934714.27
[2025-11-27 16:42:48] 2025-11-27 21:42:08,810 | INFO     | mean x: 1764235333.4779918
[2025-11-27 16:42:48] 2025-11-27 21:42:08,810 | INFO     | mean y: 2891071.696011004
[2025-11-27 16:42:48] 2025-11-27 21:42:08,814 | INFO     | intersect: -9848550485.912203
[2025-11-27 16:42:48] 2025-11-27 21:42:08,815 | INFO     | chi2: 6.636867861204531
[2025-11-27 16:42:48] 2025-11-27 21:42:08,817 | INFO     | sum of square deviations: 943404038450.4968
[2025-11-27 16:42:48] 2025-11-27 21:42:08,906 | INFO     | sum of deviations: 5816657758875.9375
[2025-11-27 16:42:48] 2025-11-27 21:42:08,906 | INFO     | mean x: 1764235180.9813664
[2025-11-27 16:42:48] 2025-11-27 21:42:08,907 | INFO     | mean y: 2898760.5162180816
[2025-11-27 16:42:48] 2025-11-27 21:42:08,907 | INFO     | intersect: -10874680554.060389
[2025-11-27 16:42:48] 2025-11-27 21:42:08,908 | INFO     | chi2: 3.448760633672652
[2025-11-27 16:42:48] 2025-11-27 21:42:08,908 | INFO     | current chi2=3.448760633672652 (change=48.03632216587881 %)
[2025-11-27 16:42:48] 2025-11-27 21:42:08,909 | INFO     | sum of square deviations: 933672010304.5317
[2025-11-27 16:42:48] 2025-11-27 21:42:09,000 | INFO     | sum of deviations: 5984036515369.885
[2025-11-27 16:42:48] 2025-11-27 21:42:09,004 | INFO     | mean x: 1764235028.4819944
[2025-11-27 16:42:48] 2025-11-27 21:42:09,004 | INFO     | mean y: 2901381.8608033243
[2025-11-27 16:42:48] 2025-11-27 21:42:09,004 | INFO     | intersect: -11304331474.661768
[2025-11-27 16:42:48] 2025-11-27 21:42:09,006 | INFO     | chi2: 2.8877878931271113
[2025-11-27 16:42:48] 2025-11-27 21:42:09,006 | INFO     | current chi2=2.8877878931271113 (change=16.265922751158005 %)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,006 | INFO     | right removable region: 1443
[2025-11-27 16:42:48] 2025-11-27 21:42:09,007 | INFO     | sum of square deviations: 943403171030.4962
[2025-11-27 16:42:48] 2025-11-27 21:42:09,183 | INFO     | sum of deviations: 4892978423375.408
[2025-11-27 16:42:48] 2025-11-27 21:42:09,183 | INFO     | mean x: 1764235485.9813664
[2025-11-27 16:42:48] 2025-11-27 21:42:09,183 | INFO     | mean y: 2897753.0524499654
[2025-11-27 16:42:48] 2025-11-27 21:42:09,183 | INFO     | intersect: -9147343026.00998
[2025-11-27 16:42:48] 2025-11-27 21:42:09,184 | INFO     | chi2: 4.1551968812934765
[2025-11-27 16:42:48] 2025-11-27 21:42:09,184 | INFO     | current chi2=4.1551968812934765 (change=37.39220113779174 %)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,185 | INFO     | sum of square deviations: 933670629260.6644
[2025-11-27 16:42:48] 2025-11-27 21:42:09,296 | INFO     | sum of deviations: 4772207484492.728
[2025-11-27 16:42:48] 2025-11-27 21:42:09,297 | INFO     | mean x: 1764235638.4847646
[2025-11-27 16:42:48] 2025-11-27 21:42:09,297 | INFO     | mean y: 2899645.2146814405
[2025-11-27 16:42:48] 2025-11-27 21:42:09,297 | INFO     | intersect: -9014518547.593523
[2025-11-27 16:42:48] 2025-11-27 21:42:09,298 | INFO     | chi2: 4.090175231552489
[2025-11-27 16:42:48] 2025-11-27 21:42:09,298 | INFO     | current chi2=4.090175231552489 (change=1.5648271694107363 %)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,298 | INFO     | left removable region: 20
[2025-11-27 16:42:48] 2025-11-27 21:42:09,316 | INFO     | sum of square deviations: 893526149519.9557
[2025-11-27 16:42:48] 2025-11-27 21:42:09,397 | INFO     | sum of deviations: 5242960933674.474
[2025-11-27 16:42:48] 2025-11-27 21:42:09,397 | INFO     | mean x: 1764235607.994378
[2025-11-27 16:42:48] 2025-11-27 21:42:09,397 | INFO     | mean y: 2913406.5593815884
[2025-11-27 16:42:48] 2025-11-27 21:42:09,397 | INFO     | intersect: -10349126514.691267
[2025-11-27 16:42:48] 2025-11-27 21:42:09,402 | INFO     | chi2: 0.24974515519003335
[2025-11-27 16:42:48] 2025-11-27 21:42:09,403 | INFO     | current memory leak: 5.87 B/s (using 1423 data points, chi2=0.25)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | could have reported an average CPU frequency of 3000 MHz (52 samples)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | ..............................
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . Timing measurements:
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . get job = 0 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . initial setup = 2 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . payload setup = 6 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . stage-in = 0 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,404 | INFO     | . payload execution = 88678 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,405 | INFO     | . stage-out = 8 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,405 | INFO     | . log creation = 2 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,405 | INFO     | ..............................
[2025-11-27 16:42:48] 2025-11-27 21:42:09,850 | INFO     | 
[2025-11-27 16:42:48] 2025-11-27 21:42:09,850 | INFO     | job summary report
[2025-11-27 16:42:48] 2025-11-27 21:42:09,850 | INFO     | --------------------------------------------------
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | PanDA job id: 6897864984
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | task id: 47556161
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | errors: (none)
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | pilot state: finished 
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | transexitcode: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | exeerrorcode: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | exeerrordiag: 
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | exitcode: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | exitmsg: OK
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | cpuconsumptiontime: 217559 s
[2025-11-27 16:42:48] 2025-11-27 21:42:09,851 | INFO     | nevents: 1000
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | neventsw: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | pid: 3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | pgrp: 3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | corecount: 8
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | event service: False
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | sizes: {0: 2284265, 6: 2284527, 11: 2284555, 88690: 2351816, 88691: 2351815, 88700: 2360865, 88703: 2361049, 88727: 2361295}
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | --------------------------------------------------
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | 
[2025-11-27 16:42:48] 2025-11-27 21:42:09,852 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 16:42:48] 2025-11-27 21:42:10,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:42:48] 2025-11-27 21:42:10,118 | INFO     | job 6897864984 has completed (purged errors)
[2025-11-27 16:42:48] 2025-11-27 21:42:10,118 | INFO     | overall cleanup function is called
[2025-11-27 16:42:48] 2025-11-27 21:42:11,155 | INFO     | --- collectZombieJob: --- 10, [3845224]
[2025-11-27 16:42:48] 2025-11-27 21:42:11,155 | INFO     | zombie collector waiting for pid 3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:11,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:42:48] 2025-11-27 21:42:11,156 | INFO     | collected zombie processes
[2025-11-27 16:42:48] 2025-11-27 21:42:11,156 | INFO     | will attempt to kill all subprocesses of pid=3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:12,727 | INFO     | process IDs to be killed: [3845224] (in reverse order)
[2025-11-27 16:42:48] 2025-11-27 21:42:12,935 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:42:48] 2025-11-27 21:42:12,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:42:48] 2025-11-27 21:42:12,967 | INFO     | did not find any defunct processes belonging to 3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:12,998 | INFO     | did not find any defunct processes belonging to 3845224
[2025-11-27 16:42:48] 2025-11-27 21:42:13,000 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:42:48] 2025-11-27 21:42:13,000 | INFO     | ready for new job
[2025-11-27 16:42:48] 2025-11-27 21:42:13,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:42:48] 2025-11-27 21:42:13,010 | INFO     | ***************************************
[2025-11-27 16:42:48] 2025-11-27 21:42:13,010 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:42:48] 2025-11-27 21:42:13,011 | INFO     | ***************************************
[2025-11-27 16:42:48] 2025-11-27 21:42:13,011 | INFO     | 
[2025-11-27 16:42:48] 2025-11-27 21:42:13,029 | INFO     | architecture information:
[2025-11-27 16:42:48] 2025-11-27 21:42:13,041 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:42:48] 2025-11-27 21:42:13,073 | INFO     | cat /etc/os-release:
[2025-11-27 16:42:48] NAME="CentOS Linux"
[2025-11-27 16:42:48] VERSION="7 (Core)"
[2025-11-27 16:42:48] ID="centos"
[2025-11-27 16:42:48] ID_LIKE="rhel fedora"
[2025-11-27 16:42:48] VERSION_ID="7"
[2025-11-27 16:42:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:42:48] ANSI_COLOR="0;31"
[2025-11-27 16:42:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:42:48] HOME_URL="https://www.centos.org/"
[2025-11-27 16:42:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:42:48] 
[2025-11-27 16:42:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:42:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:42:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:42:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:42:48] 
[2025-11-27 16:42:48] 2025-11-27 21:42:13,073 | INFO     | ***************************************
[2025-11-27 16:42:48] 2025-11-27 21:42:13,577 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 16:42:48] 2025-11-27 21:42:13,623 | INFO     | sufficient remaining disk space (122918273024 B)
[2025-11-27 16:42:48] 2025-11-27 21:42:13,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:42:48] 2025-11-27 21:42:13,624 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:42:48] 2025-11-27 21:42:13,624 | INFO     | update_server=False
[2025-11-27 16:42:48] 2025-11-27 21:42:13,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:42:48] 2025-11-27 21:42:13,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:42:48] 2025-11-27 21:42:13,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:42:48] 2025-11-27 21:42:13,906 | INFO     | aborting loop
[2025-11-27 16:42:48] 2025-11-27 21:42:14,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:42:48] 2025-11-27 21:42:14,220 | INFO     | all job control threads have been joined
[2025-11-27 16:42:48] 2025-11-27 21:42:14,416 | INFO     | all payload control threads have been joined
[2025-11-27 16:42:48] 2025-11-27 21:42:14,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:42:48] 2025-11-27 21:42:14,632 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:14,729 | INFO     | all data control threads have been joined
[2025-11-27 16:42:48] 2025-11-27 21:42:14,882 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:14,883 | INFO     | [job] validate thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:14,908 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:14,912 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,200 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,227 | INFO     | [job] control thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,415 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,423 | INFO     | [payload] control thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,612 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,619 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,634 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:15,735 | INFO     | [data] control thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:16,102 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:16,195 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:18,114 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:42:48] 2025-11-27 21:42:40,431 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:42:48] 2025-11-27 21:42:41,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856854411072)>', '<ExcThread(monitor, started 139856130856704)>']
[2025-11-27 16:42:48] 2025-11-27 21:42:44,781 | INFO     | PID=3838419 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:42:48] 2025-11-27 21:42:44,781 | INFO     | .. there are 18 such processes running
[2025-11-27 16:42:48] 2025-11-27 21:42:44,782 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:42:48] 2025-11-27 21:42:44,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:42:48] 2025-11-27 21:42:44,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:42:48] 2025-11-27 21:42:44,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:42:48] 2025-11-27 21:42:44,782 | INFO     | [monitor] control thread has ended
[2025-11-27 16:42:48] 2025-11-27 21:42:46,077 | INFO     | all workflow threads have been joined
[2025-11-27 16:42:48] 2025-11-27 21:42:46,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:42:48] 2025-11-27 21:42:46,077 | INFO     | traces error code: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:46,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:42:48] 2025-11-27 21:42:46,396 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:42:48] 2025-11-27 21:42:46,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:42:48] 2025-11-27 21:42:46,528 [wrapper] pilotpid: 3838419
[2025-11-27 16:42:48] 2025-11-27 21:42:46,599 [wrapper] Pilot exit status: 0
[2025-11-27 16:42:48] 2025-11-27 21:42:46,801 [wrapper] pandaids: 6897864984
[2025-11-27 16:42:48] 2025-11-27 21:42:47,277 [wrapper] cleanup supervisor_pilot 3096524 3838420
[2025-11-27 16:42:48] 2025-11-27 21:42:47,299 [wrapper] Test setup, not cleaning
[2025-11-27 16:42:48] 2025-11-27 21:42:47,318 [wrapper] apfmon messages muted
[2025-11-27 16:42:48] 2025-11-27 21:42:47,337 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:42:48] 2025-11-27 21:42:47,355 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:42:48]  *** Error codes and diagnostics ***
[2025-11-27 16:42:48]     "exeErrorCode": 0,
[2025-11-27 16:42:48]     "exeErrorDiag": "",
[2025-11-27 16:42:48]     "pilotErrorCode": 0,
[2025-11-27 16:42:48]     "pilotErrorDiag": "",
[2025-11-27 16:42:48]  *** Listing of results directory ***
[2025-11-27 16:42:48] total 1336676
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 16:42:48] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:42:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:02 run_atlas
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:02 job.xml
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas 409388465 Nov 26 16:02 EVNT.47483658._002348.pool.root.1
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:02 start_atlas.sh
[2025-11-27 16:42:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:02 shared
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 16:02 input.tar.gz
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:02 boinc_lockfile
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:02 pandaJob.out
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas        57 Nov 26 16:02 setup.sh.local
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas    991538 Nov 26 16:03 agis_schedconf.cvmfs.json
[2025-11-27 16:42:48] drwx------. 5 boincer umatlas      4096 Nov 26 16:03 pilot3
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:29 boinc_task_state.xml
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 16:40 init_data.xml
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas 927102644 Nov 27 16:40 HITS.47556161._003304.pool.root.1
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas      1053 Nov 27 16:41 memory_monitor_summary.json
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas   2493194 Nov 27 16:41 log.47556161._003304.job.log.tgz.1
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas        95 Nov 27 16:42 pilot_heartbeat.json
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas      8590 Nov 27 16:42 heartbeat.json
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas      4825 Nov 27 16:42 pilotlog.txt
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas  11677325 Nov 27 16:42 log.47556161._003304.job.log.1
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas       353 Nov 27 16:42 output.list
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:42 boinc_mmap_file
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:42 runtime_log
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas  14192640 Nov 27 16:42 result.tar.gz
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:42 wrapper_checkpoint.txt
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 16:42 runtime_log.err
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas       663 Nov 27 16:42 mGdMDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWkJKDmjX1Hmn.diag
[2025-11-27 16:42:48] -rw-r--r--. 1 boincer umatlas     21345 Nov 27 16:42 stderr.txt
[2025-11-27 16:42:48] HITS file was successfully produced:
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas 927102644 Nov 27 16:40 shared/HITS.pool.root.1
[2025-11-27 16:42:48]  *** Contents of shared directory: ***
[2025-11-27 16:42:48] total 1319636
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas 409388465 Nov 26 16:02 ATLAS.root_0
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:02 start_atlas.sh
[2025-11-27 16:42:48] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 16:02 input.tar.gz
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas 927102644 Nov 27 16:40 HITS.pool.root.1
[2025-11-27 16:42:48] -rw-------. 1 boincer umatlas  14192640 Nov 27 16:42 result.tar.gz
16:42:50 (3834473): run_atlas exited; CPU time 218897.653351
16:42:50 (3834473): called boinc_finish(0)

</stderr_txt>
]]>

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