Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:47:41 (31165): wrapper (7.7.26015): starting
14:47:41 (31165): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 14:47:41] Arguments: --nthreads 12
[2025-11-26 14:47:41] Threads: 12
[2025-11-26 14:47:41] Checking for CVMFS
[2025-11-26 14:47:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:47:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:47:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:47:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:47:42] 2.11.2.0 3009 73388 94960 153333 2 82 17647412 20275201 1 130560 0 30230553 99.914 3827090 34757 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 14:47:42] CVMFS is ok
[2025-11-26 14:47:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:47:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:47:42] Further information can be found at the LHC@home message board.
[2025-11-26 14:47:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:47:42] Checking for apptainer binary...
[2025-11-26 14:47:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:47:42] Running /usr/bin/apptainer --version
[2025-11-26 14:47:42] apptainer version 1.3.2-1.el7
[2025-11-26 14:47:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:47:43] c-115-42.aglt2.org
[2025-11-26 14:47:43] apptainer works
[2025-11-26 14:47:43] Set ATHENA_PROC_NUMBER=12
[2025-11-26 14:47:43] Set ATHENA_CORE_NUMBER=12
[2025-11-26 14:47:43] Starting ATLAS job with PandaID=6897880959
[2025-11-26 14:47:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:13:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:13:42] 2025-11-27 02:13:21,853 | INFO     | monitor loop #1727: job 0:6897880959 is in state 'finished'
[2025-11-26 21:13:42] 2025-11-27 02:13:21,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,735 | INFO     | time since job start (23126s) is within the limit (172800.0s)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,838 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 21:13:42] 2025-11-27 02:13:23,842 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,845 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897880959/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,845 | INFO     | extracted standard info from prmon json
[2025-11-26 21:13:42] 2025-11-27 02:13:23,845 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:13:42] 2025-11-27 02:13:23,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:13:42] 2025-11-27 02:13:23,851 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:13:42] 2025-11-27 02:13:23,851 | INFO     | sum of square deviations: 16880651216.686007
[2025-11-26 21:13:42] 2025-11-27 02:13:23,854 | INFO     | sum of deviations: 301928384320.8971
[2025-11-26 21:13:42] 2025-11-27 02:13:23,854 | INFO     | mean x: 1764198035.2480211
[2025-11-26 21:13:42] 2025-11-27 02:13:23,854 | INFO     | mean y: 3711640.8627968337
[2025-11-26 21:13:42] 2025-11-27 02:13:23,855 | INFO     | intersect: -31550844849.115303
[2025-11-26 21:13:42] 2025-11-27 02:13:23,855 | INFO     | chi2: 5.403945738514883
[2025-11-26 21:13:42] 2025-11-27 02:13:23,855 | INFO     | sum of square deviations: 16221346593.874279
[2025-11-26 21:13:42] 2025-11-27 02:13:23,858 | INFO     | sum of deviations: 458744478638.9842
[2025-11-26 21:13:42] 2025-11-27 02:13:23,858 | INFO     | mean x: 1764197882.7513368
[2025-11-26 21:13:42] 2025-11-27 02:13:23,858 | INFO     | mean y: 3747855.0320855617
[2025-11-26 21:13:42] 2025-11-27 02:13:23,859 | INFO     | intersect: -49888289976.42553
[2025-11-26 21:13:42] 2025-11-27 02:13:23,859 | INFO     | chi2: 2.371187483696876
[2025-11-26 21:13:42] 2025-11-27 02:13:23,859 | INFO     | current chi2=2.371187483696876 (change=56.12118258706781 %)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,859 | INFO     | sum of square deviations: 15579414831.560917
[2025-11-26 21:13:42] 2025-11-27 02:13:23,862 | INFO     | sum of deviations: 475582607845.5277
[2025-11-26 21:13:42] 2025-11-27 02:13:23,862 | INFO     | mean x: 1764197730.2520325
[2025-11-26 21:13:42] 2025-11-27 02:13:23,862 | INFO     | mean y: 3751791.962059621
[2025-11-26 21:13:42] 2025-11-27 02:13:23,862 | INFO     | intersect: -53850758559.012405
[2025-11-26 21:13:42] 2025-11-27 02:13:23,863 | INFO     | chi2: 2.1118456773784264
[2025-11-26 21:13:42] 2025-11-27 02:13:23,863 | INFO     | current chi2=2.1118456773784264 (change=10.937212181725682 %)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,863 | INFO     | right removable region: 368
[2025-11-26 21:13:42] 2025-11-27 02:13:23,864 | INFO     | sum of square deviations: 16221289253.874279
[2025-11-26 21:13:42] 2025-11-27 02:13:23,866 | INFO     | sum of deviations: 181965650007.23544
[2025-11-26 21:13:42] 2025-11-27 02:13:23,866 | INFO     | mean x: 1764198187.7513368
[2025-11-26 21:13:42] 2025-11-27 02:13:23,867 | INFO     | mean y: 3739270.529411765
[2025-11-26 21:13:42] 2025-11-27 02:13:23,867 | INFO     | intersect: -19786516913.89106
[2025-11-26 21:13:42] 2025-11-27 02:13:23,867 | INFO     | chi2: 3.4141388460136093
[2025-11-26 21:13:42] 2025-11-27 02:13:23,867 | INFO     | current chi2=3.4141388460136093 (change=36.82137069437182 %)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,868 | INFO     | sum of square deviations: 15579345657.560904
[2025-11-26 21:13:42] 2025-11-27 02:13:23,870 | INFO     | sum of deviations: 154958433118.92688
[2025-11-26 21:13:42] 2025-11-27 02:13:23,870 | INFO     | mean x: 1764198340.2520325
[2025-11-26 21:13:42] 2025-11-27 02:13:23,871 | INFO     | mean y: 3745678.4308943087
[2025-11-26 21:13:42] 2025-11-27 02:13:23,871 | INFO     | intersect: -17543680030.285698
[2025-11-26 21:13:42] 2025-11-27 02:13:23,871 | INFO     | chi2: 3.379723161809931
[2025-11-26 21:13:42] 2025-11-27 02:13:23,871 | INFO     | current chi2=3.379723161809931 (change=1.0080341121411163 %)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,871 | INFO     | left removable region: 20
[2025-11-26 21:13:42] 2025-11-27 02:13:23,872 | INFO     | sum of square deviations: 13067992305.747128
[2025-11-26 21:13:42] 2025-11-27 02:13:23,874 | INFO     | sum of deviations: 293537270837.3907
[2025-11-26 21:13:42] 2025-11-27 02:13:23,874 | INFO     | mean x: 1764198309.7471263
[2025-11-26 21:13:42] 2025-11-27 02:13:23,875 | INFO     | mean y: 3795819.3908045976
[2025-11-26 21:13:42] 2025-11-27 02:13:23,875 | INFO     | intersect: -39624170354.981834
[2025-11-26 21:13:42] 2025-11-27 02:13:23,875 | INFO     | chi2: 0.04208364721975045
[2025-11-26 21:13:42] 2025-11-27 02:13:23,875 | INFO     | current memory leak: 22.46 B/s (using 348 data points, chi2=0.04)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | could have reported an average CPU frequency of 2563 MHz (16 samples)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | ..............................
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . Timing measurements:
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . get job = 0 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . initial setup = 2 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . payload setup = 7 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . stage-in = 0 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . payload execution = 23087 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . stage-out = 2 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,876 | INFO     | . log creation = 0 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,877 | INFO     | ..............................
[2025-11-26 21:13:42] 2025-11-27 02:13:23,949 | INFO     | 
[2025-11-26 21:13:42] 2025-11-27 02:13:23,949 | INFO     | job summary report
[2025-11-26 21:13:42] 2025-11-27 02:13:23,949 | INFO     | --------------------------------------------------
[2025-11-26 21:13:42] 2025-11-27 02:13:23,950 | INFO     | PanDA job id: 6897880959
[2025-11-26 21:13:42] 2025-11-27 02:13:23,950 | INFO     | task id: 47556161
[2025-11-26 21:13:42] 2025-11-27 02:13:23,950 | INFO     | errors: (none)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:13:42] 2025-11-27 02:13:23,950 | INFO     | pilot state: finished 
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | transexitcode: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | exeerrorcode: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | exeerrordiag: 
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | exitcode: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | exitmsg: OK
[2025-11-26 21:13:42] 2025-11-27 02:13:23,951 | INFO     | cpuconsumptiontime: 267522 s
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | nevents: 1000
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | neventsw: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | pid: 8982
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | pgrp: 8982
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | corecount: 12
[2025-11-26 21:13:42] 2025-11-27 02:13:23,952 | INFO     | event service: False
[2025-11-26 21:13:42] 2025-11-27 02:13:23,953 | INFO     | sizes: {0: 2284094, 1: 2284293, 5: 2284555, 11: 2284611, 23098: 2320431, 23101: 2329425, 23105: 2329609, 23110: 2329855}
[2025-11-26 21:13:42] 2025-11-27 02:13:23,953 | INFO     | --------------------------------------------------
[2025-11-26 21:13:42] 2025-11-27 02:13:23,953 | INFO     | 
[2025-11-26 21:13:42] 2025-11-27 02:13:23,953 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 21:13:42] 2025-11-27 02:13:23,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:13:42] 2025-11-27 02:13:23,981 | INFO     | job 6897880959 has completed (purged errors)
[2025-11-26 21:13:42] 2025-11-27 02:13:23,981 | INFO     | overall cleanup function is called
[2025-11-26 21:13:42] 2025-11-27 02:13:24,998 | INFO     | --- collectZombieJob: --- 10, [8982]
[2025-11-26 21:13:42] 2025-11-27 02:13:24,998 | INFO     | zombie collector waiting for pid 8982
[2025-11-26 21:13:42] 2025-11-27 02:13:24,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:13:42] 2025-11-27 02:13:24,998 | INFO     | collected zombie processes
[2025-11-26 21:13:42] 2025-11-27 02:13:24,999 | INFO     | will attempt to kill all subprocesses of pid=8982
[2025-11-26 21:13:42] 2025-11-27 02:13:25,088 | INFO     | process IDs to be killed: [8982] (in reverse order)
[2025-11-26 21:13:42] 2025-11-27 02:13:25,138 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:13:42] 2025-11-27 02:13:25,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:13:42] 2025-11-27 02:13:25,142 | INFO     | did not find any defunct processes belonging to 8982
[2025-11-26 21:13:42] 2025-11-27 02:13:25,146 | INFO     | did not find any defunct processes belonging to 8982
[2025-11-26 21:13:42] 2025-11-27 02:13:25,148 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:13:42] 2025-11-27 02:13:25,148 | INFO     | ready for new job
[2025-11-26 21:13:42] 2025-11-27 02:13:25,148 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:13:42] 2025-11-27 02:13:25,150 | INFO     | ***************************************
[2025-11-26 21:13:42] 2025-11-27 02:13:25,150 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:13:42] 2025-11-27 02:13:25,150 | INFO     | ***************************************
[2025-11-26 21:13:42] 2025-11-27 02:13:25,150 | INFO     | 
[2025-11-26 21:13:42] 2025-11-27 02:13:25,151 | INFO     | architecture information:
[2025-11-26 21:13:42] 2025-11-27 02:13:25,152 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:13:42] 2025-11-27 02:13:25,167 | INFO     | cat /etc/os-release:
[2025-11-26 21:13:42] NAME="CentOS Linux"
[2025-11-26 21:13:42] VERSION="7 (Core)"
[2025-11-26 21:13:42] ID="centos"
[2025-11-26 21:13:42] ID_LIKE="rhel fedora"
[2025-11-26 21:13:42] VERSION_ID="7"
[2025-11-26 21:13:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:13:42] ANSI_COLOR="0;31"
[2025-11-26 21:13:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:13:42] HOME_URL="https://www.centos.org/"
[2025-11-26 21:13:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:13:42] 
[2025-11-26 21:13:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:13:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:13:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:13:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:13:42] 
[2025-11-26 21:13:42] 2025-11-27 02:13:25,168 | INFO     | ***************************************
[2025-11-26 21:13:42] 2025-11-27 02:13:25,671 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 21:13:42] 2025-11-27 02:13:25,686 | INFO     | sufficient remaining disk space (17472421888 B)
[2025-11-26 21:13:42] 2025-11-27 02:13:25,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:13:42] 2025-11-27 02:13:25,687 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:13:42] 2025-11-27 02:13:25,687 | INFO     | update_server=False
[2025-11-26 21:13:42] 2025-11-27 02:13:25,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:13:42] 2025-11-27 02:13:25,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:13:42] 2025-11-27 02:13:25,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:13:42] 2025-11-27 02:13:25,688 | INFO     | aborting loop
[2025-11-26 21:13:42] 2025-11-27 02:13:25,688 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 21:13:42] 2025-11-27 02:13:25,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:13:42] 2025-11-27 02:13:25,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:13:42] 2025-11-27 02:13:25,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:13:42] 2025-11-27 02:13:25,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:13:42] 2025-11-27 02:13:25,958 | INFO     | all data control threads have been joined
[2025-11-26 21:13:42] 2025-11-27 02:13:26,647 | INFO     | all payload control threads have been joined
[2025-11-26 21:13:42] 2025-11-27 02:13:26,688 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:26,692 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:26,694 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:26,964 | INFO     | [data] control thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,078 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,096 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,358 | INFO     | all job control threads have been joined
[2025-11-26 21:13:42] 2025-11-27 02:13:27,394 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,653 | INFO     | [payload] control thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,670 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,694 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:27,925 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:28,094 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:28,109 | INFO     | [job] validate thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:28,363 | INFO     | [job] control thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:28,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:13:42] 2025-11-27 02:13:32,901 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:35,329 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:13:42] 2025-11-27 02:13:36,088 | INFO     | job.realtimelogging is not enabled
[2025-11-26 21:13:42] 2025-11-27 02:13:37,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:13:42] 2025-11-27 02:13:37,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139674890061632)>', '<ExcThread(monitor, started 139674441983744)>']
[2025-11-26 21:13:42] 2025-11-27 02:13:37,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:13:42] 2025-11-27 02:13:37,743 | INFO     | [monitor] control thread has ended
[2025-11-26 21:13:42] 2025-11-27 02:13:42,233 | INFO     | all workflow threads have been joined
[2025-11-26 21:13:42] 2025-11-27 02:13:42,233 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:13:42] 2025-11-27 02:13:42,234 | INFO     | traces error code: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:42,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:13:42] 2025-11-27 02:13:42,312 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:13:42] 2025-11-27 02:13:42,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:13:42] 2025-11-27 02:13:42,319 [wrapper] pilotpid: 2467
[2025-11-26 21:13:42] 2025-11-27 02:13:42,322 [wrapper] Pilot exit status: 0
[2025-11-26 21:13:42] 2025-11-27 02:13:42,335 [wrapper] pandaids: 6897880959
[2025-11-26 21:13:42] 2025-11-27 02:13:42,371 [wrapper] cleanup supervisor_pilot 18458 2468
[2025-11-26 21:13:42] 2025-11-27 02:13:42,375 [wrapper] Test setup, not cleaning
[2025-11-26 21:13:42] 2025-11-27 02:13:42,379 [wrapper] apfmon messages muted
[2025-11-26 21:13:42] 2025-11-27 02:13:42,382 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:13:42] 2025-11-27 02:13:42,386 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:13:42]  *** Error codes and diagnostics ***
[2025-11-26 21:13:42]     "exeErrorCode": 0,
[2025-11-26 21:13:42]     "exeErrorDiag": "",
[2025-11-26 21:13:42]     "pilotErrorCode": 0,
[2025-11-26 21:13:42]     "pilotErrorDiag": "",
[2025-11-26 21:13:42]  *** Listing of results directory ***
[2025-11-26 21:13:42] total 1312564
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 21:13:42] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas       100 Nov 26 14:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:13:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 14:47 run_atlas
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas       105 Nov 26 14:47 job.xml
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas 408123548 Nov 26 14:47 EVNT.47483658._002353.pool.root.1
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 14:47 start_atlas.sh
[2025-11-26 21:13:42] drwxrwx--x 2 boincer umatlas      4096 Nov 26 14:47 shared
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas    590111 Nov 26 14:47 input.tar.gz
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas         0 Nov 26 14:47 boinc_lockfile
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 14:47 pandaJob.out
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas        57 Nov 26 14:47 setup.sh.local
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas    991522 Nov 26 14:47 agis_schedconf.cvmfs.json
[2025-11-26 21:13:42] drwx------ 5 boincer umatlas      4096 Nov 26 14:47 pilot3
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas       532 Nov 26 21:06 boinc_task_state.xml
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 21:12 init_data.xml
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas        95 Nov 26 21:12 pilot_heartbeat.json
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas 921280848 Nov 26 21:12 HITS.47556161._003353.pool.root.1
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 21:13 boinc_mmap_file
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas      1065 Nov 26 21:13 memory_monitor_summary.json
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas        29 Nov 26 21:13 wrapper_checkpoint.txt
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas   1516240 Nov 26 21:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas   2140901 Nov 26 21:13 log.47556161._003353.job.log.tgz.1
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas      8664 Nov 26 21:13 heartbeat.json
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas      4624 Nov 26 21:13 pilotlog.txt
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas   3227846 Nov 26 21:13 log.47556161._003353.job.log.1
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas       353 Nov 26 21:13 output.list
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas       620 Nov 26 21:13 runtime_log
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas   5386240 Nov 26 21:13 result.tar.gz
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 21:13 runtime_log.err
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas       669 Nov 26 21:13 LdQMDmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYeMKDmSBVXIm.diag
[2025-11-26 21:13:42] -rw-r--r-- 1 boincer umatlas     21213 Nov 26 21:13 stderr.txt
[2025-11-26 21:13:42] HITS file was successfully produced:
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas 921280848 Nov 26 21:12 shared/HITS.pool.root.1
[2025-11-26 21:13:42]  *** Contents of shared directory: ***
[2025-11-26 21:13:42] total 1304116
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas 408123548 Nov 26 14:47 ATLAS.root_0
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 14:47 start_atlas.sh
[2025-11-26 21:13:42] -rw-r--r-- 2 boincer umatlas    590111 Nov 26 14:47 input.tar.gz
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas 921280848 Nov 26 21:12 HITS.pool.root.1
[2025-11-26 21:13:42] -rw------- 1 boincer umatlas   5386240 Nov 26 21:13 result.tar.gz
21:13:44 (31165): run_atlas exited; CPU time 264002.042890
21:13:44 (31165): called boinc_finish(0)

</stderr_txt>
]]>

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