Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:09:17 (6744): wrapper (7.7.26015): starting
01:09:17 (6744): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 01:09:17] Arguments: --nthreads 8
[2025-11-29 01:09:17] Threads: 8
[2025-11-29 01:09:17] Checking for CVMFS
[2025-11-29 01:09:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 01:09:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 01:09:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 01:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 01:09:20] 2.11.2.0 20077 288955 141296 153423 0 85 22810670 25165825 1336 130560 10 138120295 99.873 77785406 2606 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 01:09:20] CVMFS is ok
[2025-11-29 01:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 01:09:20] Checking for apptainer binary...
[2025-11-29 01:09:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 01:09:20] Running /usr/bin/apptainer --version
[2025-11-29 01:09:20] apptainer version 1.3.2-1.el7
[2025-11-29 01:09:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 01:09:29] cg-vwn315.simple-grid.lan
[2025-11-29 01:09:29] apptainer works
[2025-11-29 01:09:29] Set ATHENA_PROC_NUMBER=8
[2025-11-29 01:09:29] Set ATHENA_CORE_NUMBER=8
[2025-11-29 01:09:29] Starting ATLAS job with PandaID=6897531511
[2025-11-29 01:09:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 00:36:07]  *** The last 200 lines of the pilot log: ***
[2025-11-30 00:36:07] 2025-11-29 23:35:20,468 | INFO     | time since job start (84113s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:20,880 | INFO     | monitor loop #5683: job 0:6897531511 is in state 'finished'
[2025-11-30 00:36:07] 2025-11-29 23:35:20,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:36:07] 2025-11-29 23:35:22,477 | INFO     | time since job start (84115s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:23,387 | INFO     | monitor loop #5684: job 0:6897531511 is in state 'finished'
[2025-11-30 00:36:07] 2025-11-29 23:35:23,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:36:07] 2025-11-29 23:35:24,497 | INFO     | time since job start (84117s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:25,892 | INFO     | monitor loop #5685: job 0:6897531511 is in state 'finished'
[2025-11-30 00:36:07] 2025-11-29 23:35:25,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:36:07] 2025-11-29 23:35:26,504 | INFO     | time since job start (84119s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:28,400 | INFO     | monitor loop #5686: job 0:6897531511 is in state 'finished'
[2025-11-30 00:36:07] 2025-11-29 23:35:28,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:36:07] 2025-11-29 23:35:28,513 | INFO     | time since job start (84121s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:30,522 | INFO     | time since job start (84123s) is within the limit (172800.0s)
[2025-11-30 00:36:07] 2025-11-29 23:35:30,905 | INFO     | monitor loop #5687: job 0:6897531511 is in state 'finished'
[2025-11-30 00:36:07] 2025-11-29 23:35:30,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,294 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 00:36:07] 2025-11-29 23:35:31,295 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 00:36:07] 2025-11-29 23:35:31,297 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6897531511/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,298 | INFO     | extracted standard info from prmon json
[2025-11-30 00:36:07] 2025-11-29 23:35:31,298 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 00:36:07] 2025-11-29 23:35:31,298 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 00:36:07] 2025-11-29 23:35:31,337 | INFO     | fitting pss+swap vs Time
[2025-11-30 00:36:07] 2025-11-29 23:35:31,339 | INFO     | sum of square deviations: 795588541044.0663
[2025-11-30 00:36:07] 2025-11-29 23:35:31,430 | INFO     | sum of deviations: 3323976461894.586
[2025-11-30 00:36:07] 2025-11-29 23:35:31,430 | INFO     | mean x: 1764417461.117604
[2025-11-30 00:36:07] 2025-11-29 23:35:31,430 | INFO     | mean y: 2845864.8597516436
[2025-11-30 00:36:07] 2025-11-29 23:35:31,430 | INFO     | intersect: -7368907003.795348
[2025-11-30 00:36:07] 2025-11-29 23:35:31,432 | INFO     | chi2: 23.42860053039933
[2025-11-30 00:36:07] 2025-11-29 23:35:31,434 | INFO     | sum of square deviations: 786903616932.7977
[2025-11-30 00:36:07] 2025-11-29 23:35:31,522 | INFO     | sum of deviations: 3777359224849.575
[2025-11-30 00:36:07] 2025-11-29 23:35:31,523 | INFO     | mean x: 1764417308.6217008
[2025-11-30 00:36:07] 2025-11-29 23:35:31,523 | INFO     | mean y: 2853824.8519061585
[2025-11-30 00:36:07] 2025-11-29 23:35:31,523 | INFO     | intersect: -8466846725.2417965
[2025-11-30 00:36:07] 2025-11-29 23:35:31,524 | INFO     | chi2: 20.270624751790493
[2025-11-30 00:36:07] 2025-11-29 23:35:31,525 | INFO     | current chi2=20.270624751790493 (change=13.479148165556307 %)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,525 | INFO     | right removable region: 1363
[2025-11-30 00:36:07] 2025-11-29 23:35:31,527 | INFO     | sum of square deviations: 786902683632.7979
[2025-11-30 00:36:07] 2025-11-29 23:35:31,596 | INFO     | sum of deviations: 2739317003001.998
[2025-11-30 00:36:07] 2025-11-29 23:35:31,597 | INFO     | mean x: 1764417613.6217008
[2025-11-30 00:36:07] 2025-11-29 23:35:31,597 | INFO     | mean y: 2856129.7771261
[2025-11-30 00:36:07] 2025-11-29 23:35:31,597 | INFO     | intersect: -6139325451.14827
[2025-11-30 00:36:07] 2025-11-29 23:35:31,599 | INFO     | chi2: 18.483791392930303
[2025-11-30 00:36:07] 2025-11-29 23:35:31,599 | INFO     | current chi2=18.483791392930303 (change=21.10586644325163 %)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,599 | INFO     | left removable region: 10
[2025-11-30 00:36:07] 2025-11-29 23:35:31,601 | INFO     | sum of square deviations: 768017909375.8446
[2025-11-30 00:36:07] 2025-11-29 23:35:31,667 | INFO     | sum of deviations: 2786191058027.7646
[2025-11-30 00:36:07] 2025-11-29 23:35:31,667 | INFO     | mean x: 1764417583.1308205
[2025-11-30 00:36:07] 2025-11-29 23:35:31,667 | INFO     | mean y: 2875439.204730229
[2025-11-30 00:36:07] 2025-11-29 23:35:31,668 | INFO     | intersect: -6398022811.646227
[2025-11-30 00:36:07] 2025-11-29 23:35:31,669 | INFO     | chi2: 10.536387802356328
[2025-11-30 00:36:07] 2025-11-29 23:35:31,669 | INFO     | current memory leak: 3.63 B/s (using 1353 data points, chi2=10.54)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,671 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,671 | INFO     | ..............................
[2025-11-30 00:36:07] 2025-11-29 23:35:31,671 | INFO     | . Timing measurements:
[2025-11-30 00:36:07] 2025-11-29 23:35:31,671 | INFO     | . get job = 0 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . initial setup = 10 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . payload setup = 165 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . stage-in = 0 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . payload execution = 83641 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . stage-out = 7 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | . log creation = 2 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,672 | INFO     | ..............................
[2025-11-30 00:36:07] 2025-11-29 23:35:31,790 | INFO     | 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,790 | INFO     | job summary report
[2025-11-30 00:36:07] 2025-11-29 23:35:31,790 | INFO     | --------------------------------------------------
[2025-11-30 00:36:07] 2025-11-29 23:35:31,790 | INFO     | PanDA job id: 6897531511
[2025-11-30 00:36:07] 2025-11-29 23:35:31,790 | INFO     | task id: 47556161
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | errors: (none)
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | pilot state: finished 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | transexitcode: 0
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | exeerrorcode: 0
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | exeerrordiag: 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | exitcode: 0
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | exitmsg: OK
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | cpuconsumptiontime: 315149 s
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | nevents: 1000
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | neventsw: 0
[2025-11-30 00:36:07] 2025-11-29 23:35:31,791 | INFO     | pid: 17165
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | pgrp: 17165
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | corecount: 8
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | event service: False
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | sizes: {0: 2284039, 1: 2284294, 12: 2284294, 23: 2284322, 34: 2284350, 44: 2284378, 55: 2284534, 66: 2284562, 76: 2284590, 87: 2284646, 98: 2284674, 102: 2285244, 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | --------------------------------------------------
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | 
[2025-11-30 00:36:07] 2025-11-29 23:35:31,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,220 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 00:36:07] 2025-11-29 23:35:32,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,222 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 00:36:07] 2025-11-29 23:35:32,222 | INFO     | job 6897531511 has completed (purged errors)
[2025-11-30 00:36:07] 2025-11-29 23:35:32,222 | INFO     | overall cleanup function is called
[2025-11-30 00:36:07] 2025-11-29 23:35:33,240 | INFO     | --- collectZombieJob: --- 10, [17165]
[2025-11-30 00:36:07] 2025-11-29 23:35:33,240 | INFO     | zombie collector waiting for pid 17165
[2025-11-30 00:36:07] 2025-11-29 23:35:33,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 00:36:07] 2025-11-29 23:35:33,240 | INFO     | collected zombie processes
[2025-11-30 00:36:07] 2025-11-29 23:35:33,240 | INFO     | will attempt to kill all subprocesses of pid=17165
[2025-11-30 00:36:07] 2025-11-29 23:35:33,352 | INFO     | process IDs to be killed: [17165] (in reverse order)
[2025-11-30 00:36:07] 2025-11-29 23:35:34,346 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 00:36:07] 2025-11-29 23:35:34,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 00:36:07] 2025-11-29 23:35:34,350 | INFO     | did not find any defunct processes belonging to 17165
[2025-11-30 00:36:07] 2025-11-29 23:35:34,352 | INFO     | did not find any defunct processes belonging to 17165
[2025-11-30 00:36:07] 2025-11-29 23:35:34,355 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 00:36:07] 2025-11-29 23:35:34,356 | INFO     | ready for new job
[2025-11-30 00:36:07] 2025-11-29 23:35:34,356 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 00:36:07] 2025-11-29 23:35:34,361 | INFO     | ***************************************
[2025-11-30 00:36:07] 2025-11-29 23:35:34,361 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 00:36:07] 2025-11-29 23:35:34,361 | INFO     | ***************************************
[2025-11-30 00:36:07] 2025-11-29 23:35:34,361 | INFO     | 
[2025-11-30 00:36:07] 2025-11-29 23:35:34,362 | INFO     | pilot is running in a VM
[2025-11-30 00:36:07] 2025-11-29 23:35:34,362 | INFO     | architecture information:
[2025-11-30 00:36:07] 2025-11-29 23:35:34,363 | INFO     | executing command: cat /etc/os-release
[2025-11-30 00:36:07] 2025-11-29 23:35:34,391 | INFO     | cat /etc/os-release:
[2025-11-30 00:36:07] NAME="CentOS Linux"
[2025-11-30 00:36:07] VERSION="7 (Core)"
[2025-11-30 00:36:07] ID="centos"
[2025-11-30 00:36:07] ID_LIKE="rhel fedora"
[2025-11-30 00:36:07] VERSION_ID="7"
[2025-11-30 00:36:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 00:36:07] ANSI_COLOR="0;31"
[2025-11-30 00:36:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 00:36:07] HOME_URL="https://www.centos.org/"
[2025-11-30 00:36:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 00:36:07] 
[2025-11-30 00:36:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 00:36:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 00:36:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 00:36:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 00:36:07] 
[2025-11-30 00:36:07] 2025-11-29 23:35:34,391 | INFO     | ***************************************
[2025-11-30 00:36:07] 2025-11-29 23:35:34,895 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-11-30 00:36:07] 2025-11-29 23:35:34,910 | INFO     | sufficient remaining disk space (488264171520 B)
[2025-11-30 00:36:07] 2025-11-29 23:35:34,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 00:36:07] 2025-11-29 23:35:34,910 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 00:36:07] 2025-11-29 23:35:34,911 | INFO     | update_server=False
[2025-11-30 00:36:07] 2025-11-29 23:35:34,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 00:36:07] 2025-11-29 23:35:34,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 00:36:07] 2025-11-29 23:35:34,911 | INFO     | all payload control threads have been joined
[2025-11-30 00:36:07] 2025-11-29 23:35:34,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:36:07] 2025-11-29 23:35:34,916 | INFO     | aborting loop
[2025-11-30 00:36:07] 2025-11-29 23:35:35,355 | INFO     | all job control threads have been joined
[2025-11-30 00:36:07] 2025-11-29 23:35:35,463 | INFO     | all data control threads have been joined
[2025-11-30 00:36:07] 2025-11-29 23:35:35,917 | INFO     | [job] retrieve thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:35,922 | INFO     | [payload] control thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:35,923 | INFO     | [job] job monitor thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,035 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,056 | INFO     | [job] validate thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,059 | INFO     | [data] copytool_in thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 00:36:07] 2025-11-29 23:35:36,361 | INFO     | [job] control thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,469 | INFO     | [data] control thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,473 | INFO     | [payload] validate_post thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,476 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,681 | INFO     | [payload] failed_post thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:36,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:36:07] 2025-11-29 23:35:36,975 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:37,810 | INFO     | [job] queue monitor thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:38,114 | INFO     | [data] copytool_out thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:38,924 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 00:36:07] 2025-11-29 23:35:53,245 | INFO     | [monitor] cgroup control has ended
[2025-11-30 00:36:07] 2025-11-29 23:35:53,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810587797312)>', '<ExcThread(monitor, started 139810136106752)>']
[2025-11-30 00:36:07] 2025-11-29 23:35:58,345 | INFO     | all workflow threads have been joined
[2025-11-30 00:36:07] 2025-11-29 23:35:58,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 00:36:07] 2025-11-29 23:35:58,345 | INFO     | traces error code: 0
[2025-11-30 00:36:07] 2025-11-29 23:35:58,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 00:36:07] 2025-11-29 23:36:03,738 | INFO     | PID=10579 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 00:36:07] 2025-11-29 23:36:03,738 | INFO     | .. there are 9 such processes running
[2025-11-30 00:36:07] 2025-11-29 23:36:03,738 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 00:36:07] 2025-11-29 23:36:03,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 00:36:07] 2025-11-29 23:36:03,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 00:36:07] 2025-11-29 23:36:03,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 00:36:07] 2025-11-29 23:36:03,739 | INFO     | [monitor] control thread has ended
[2025-11-30 00:36:07] 2025-11-29 23:36:04,022 [wrapper] ==== pilot stdout END ====
[2025-11-30 00:36:07] 2025-11-29 23:36:04,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 00:36:07] 2025-11-29 23:36:04,116 [wrapper] pilotpid: 10579
[2025-11-30 00:36:07] 2025-11-29 23:36:04,184 [wrapper] Pilot exit status: 0
[2025-11-30 00:36:07] 2025-11-29 23:36:04,524 [wrapper] pandaids: 6897531511
[2025-11-30 00:36:07] 2025-11-29 23:36:04,902 [wrapper] cleanup supervisor_pilot  1099 10580
[2025-11-30 00:36:07] 2025-11-29 23:36:04,913 [wrapper] Test setup, not cleaning
[2025-11-30 00:36:07] 2025-11-29 23:36:04,946 [wrapper] apfmon messages muted
[2025-11-30 00:36:07] 2025-11-29 23:36:04,982 [wrapper] ==== wrapper stdout END ====
[2025-11-30 00:36:07] 2025-11-29 23:36:05,019 [wrapper] ==== wrapper stderr END ====
[2025-11-30 00:36:07]  *** Error codes and diagnostics ***
[2025-11-30 00:36:07]     "exeErrorCode": 0,
[2025-11-30 00:36:07]     "exeErrorDiag": "",
[2025-11-30 00:36:07]     "pilotErrorCode": 0,
[2025-11-30 00:36:07]     "pilotErrorDiag": "",
[2025-11-30 00:36:07]  *** Listing of results directory ***
[2025-11-30 00:36:07] total 1337276
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-30 00:36:07] -rwx------. 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc       100 Nov 29 01:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 00:36:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 01:09 run_atlas
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc       105 Nov 29 01:09 job.xml
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc 412045859 Nov 29 01:09 EVNT.47483658._002299.pool.root.1
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc     15847 Nov 29 01:09 start_atlas.sh
[2025-11-30 00:36:07] drwxrwx--x. 2 boinc boinc        68 Nov 29 01:09 shared
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc    590112 Nov 29 01:09 input.tar.gz
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc      6391 Nov 29 01:09 init_data.xml
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc         0 Nov 29 01:09 boinc_lockfile
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc      2786 Nov 29 01:09 pandaJob.out
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc    991818 Nov 29 01:13 agis_schedconf.cvmfs.json
[2025-11-30 00:36:07] drwx------. 5 boinc boinc      4096 Nov 29 01:13 pilot3
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc       533 Nov 30 00:13 boinc_task_state.xml
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc 926019515 Nov 30 00:32 HITS.47556161._002824.pool.root.1
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc      1033 Nov 30 00:33 memory_monitor_summary.json
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc   1516240 Nov 30 00:33 agis_ddmendpoints.agis.ALL.json
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc   2459877 Nov 30 00:33 log.47556161._002824.job.log.tgz.1
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc        95 Nov 30 00:35 pilot_heartbeat.json
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc      8626 Nov 30 00:35 heartbeat.json
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc      8192 Nov 30 00:35 boinc_mmap_file
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc        29 Nov 30 00:35 wrapper_checkpoint.txt
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc       820 Nov 30 00:36 pilotlog.txt
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc  11240270 Nov 30 00:36 log.47556161._002824.job.log.1
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc       353 Nov 30 00:36 output.list
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc       620 Nov 30 00:36 runtime_log
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc  13721600 Nov 30 00:36 result.tar.gz
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc       662 Nov 30 00:36 sU6MDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYhJKDmVQ6cFo.diag
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc      8833 Nov 30 00:36 runtime_log.err
[2025-11-30 00:36:07] -rw-r--r--. 1 boinc boinc     21443 Nov 30 00:36 stderr.txt
[2025-11-30 00:36:07] HITS file was successfully produced:
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc 926019515 Nov 30 00:32 shared/HITS.pool.root.1
[2025-11-30 00:36:07]  *** Contents of shared directory: ***
[2025-11-30 00:36:07] total 1320704
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc 412045859 Nov 29 01:09 ATLAS.root_0
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc     15847 Nov 29 01:09 start_atlas.sh
[2025-11-30 00:36:07] -rw-r--r--. 2 boinc boinc    590112 Nov 29 01:09 input.tar.gz
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc 926019515 Nov 30 00:32 HITS.pool.root.1
[2025-11-30 00:36:07] -rw-------. 1 boinc boinc  13721600 Nov 30 00:36 result.tar.gz
00:36:08 (6744): run_atlas exited; CPU time 315724.717875
00:36:08 (6744): called boinc_finish(0)

</stderr_txt>
]]>

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