Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:02:42 (16418): wrapper (7.7.26015): starting
15:02:42 (16418): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:02:42] Arguments: --nthreads 8
[2025-11-26 15:02:42] Threads: 8
[2025-11-26 15:02:42] Checking for CVMFS
[2025-11-26 15:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:02:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:02:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:02:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:02:43] 2.11.2.0 3838 142919 133928 153333 1 82 13329072 18432001 1885 130560 0 117986468 99.988 5081917 27196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 15:02:43] CVMFS is ok
[2025-11-26 15:02:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:02:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:02:43] Further information can be found at the LHC@home message board.
[2025-11-26 15:02:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:02:43] Checking for apptainer binary...
[2025-11-26 15:02:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:02:43] Running /usr/bin/apptainer --version
[2025-11-26 15:02:43] apptainer version 1.3.2-1.el7
[2025-11-26 15:02:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:02:43] c-206-4.aglt2.org
[2025-11-26 15:02:43] apptainer works
[2025-11-26 15:02:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:02:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:02:43] Starting ATLAS job with PandaID=6897863916
[2025-11-26 15:02:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:33:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:33:57] 2025-11-27 15:32:59,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:33:57] 2025-11-27 15:32:59,940 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 10:33:57] 2025-11-27 15:32:59,943 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2505.6666666666665
[2025-11-27 10:33:57] 2025-11-27 15:32:59,946 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897863916/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:33:57] 2025-11-27 15:32:59,947 | INFO     | extracted standard info from prmon json
[2025-11-27 10:33:57] 2025-11-27 15:32:59,947 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:33:57] 2025-11-27 15:32:59,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:33:57] 2025-11-27 15:32:59,961 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:33:57] 2025-11-27 15:32:59,962 | INFO     | sum of square deviations: 472827811879.14886
[2025-11-27 10:33:57] 2025-11-27 15:32:59,986 | INFO     | sum of deviations: 2248971157997.6855
[2025-11-27 10:33:57] 2025-11-27 15:32:59,986 | INFO     | mean x: 1764222477.5864465
[2025-11-27 10:33:57] 2025-11-27 15:32:59,987 | INFO     | mean y: 2895638.390095569
[2025-11-27 10:33:57] 2025-11-27 15:32:59,987 | INFO     | intersect: -8388500486.584987
[2025-11-27 10:33:57] 2025-11-27 15:32:59,988 | INFO     | chi2: 6.406064877590147
[2025-11-27 10:33:57] 2025-11-27 15:32:59,989 | INFO     | sum of square deviations: 466692767834.9214
[2025-11-27 10:33:57] 2025-11-27 15:33:00,025 | INFO     | sum of deviations: 2614914649036.5796
[2025-11-27 10:33:57] 2025-11-27 15:33:00,026 | INFO     | mean x: 1764222325.0890052
[2025-11-27 10:33:57] 2025-11-27 15:33:00,026 | INFO     | mean y: 2904730.6806282722
[2025-11-27 10:33:57] 2025-11-27 15:33:00,026 | INFO     | intersect: -9882165533.927433
[2025-11-27 10:33:57] 2025-11-27 15:33:00,028 | INFO     | chi2: 3.4870124676822005
[2025-11-27 10:33:57] 2025-11-27 15:33:00,028 | INFO     | current chi2=3.4870124676822005 (change=45.567012911771265 %)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,030 | INFO     | sum of square deviations: 460611027115.6792
[2025-11-27 10:33:57] 2025-11-27 15:33:00,075 | INFO     | sum of deviations: 2803902206728.3906
[2025-11-27 10:33:57] 2025-11-27 15:33:00,075 | INFO     | mean x: 1764222172.5915864
[2025-11-27 10:33:57] 2025-11-27 15:33:00,075 | INFO     | mean y: 2909468.666082384
[2025-11-27 10:33:57] 2025-11-27 15:33:00,076 | INFO     | intersect: -10736534773.180899
[2025-11-27 10:33:57] 2025-11-27 15:33:00,077 | INFO     | chi2: 2.6224295531909143
[2025-11-27 10:33:57] 2025-11-27 15:33:00,077 | INFO     | current chi2=2.6224295531909143 (change=24.794374052409687 %)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,078 | INFO     | right removable region: 1140
[2025-11-27 10:33:57] 2025-11-27 15:33:00,079 | INFO     | sum of square deviations: 466692426052.0986
[2025-11-27 10:33:57] 2025-11-27 15:33:00,113 | INFO     | sum of deviations: 1944609703664.9573
[2025-11-27 10:33:57] 2025-11-27 15:33:00,113 | INFO     | mean x: 1764222630.0881326
[2025-11-27 10:33:57] 2025-11-27 15:33:00,113 | INFO     | mean y: 2903195.1291448516
[2025-11-27 10:33:57] 2025-11-27 15:33:00,114 | INFO     | intersect: -7348243415.318977
[2025-11-27 10:33:57] 2025-11-27 15:33:00,115 | INFO     | chi2: 4.343085077794596
[2025-11-27 10:33:57] 2025-11-27 15:33:00,115 | INFO     | current chi2=4.343085077794596 (change=32.203542099804785 %)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,116 | INFO     | sum of square deviations: 460610273887.8616
[2025-11-27 10:33:57] 2025-11-27 15:33:00,145 | INFO     | sum of deviations: 1868652971215.7012
[2025-11-27 10:33:57] 2025-11-27 15:33:00,146 | INFO     | mean x: 1764222782.59071
[2025-11-27 10:33:57] 2025-11-27 15:33:00,146 | INFO     | mean y: 2905099.273444347
[2025-11-27 10:33:57] 2025-11-27 15:33:00,146 | INFO     | intersect: -7154382376.639803
[2025-11-27 10:33:57] 2025-11-27 15:33:00,148 | INFO     | chi2: 4.29403879050468
[2025-11-27 10:33:57] 2025-11-27 15:33:00,148 | INFO     | current chi2=4.29403879050468 (change=1.1292960283159257 %)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,148 | INFO     | left removable region: 20
[2025-11-27 10:33:57] 2025-11-27 15:33:00,149 | INFO     | sum of square deviations: 435643307978.39136
[2025-11-27 10:33:57] 2025-11-27 15:33:00,179 | INFO     | sum of deviations: 2309796562985.7935
[2025-11-27 10:33:57] 2025-11-27 15:33:00,179 | INFO     | mean x: 1764222752.0973215
[2025-11-27 10:33:57] 2025-11-27 15:33:00,180 | INFO     | mean y: 2923124.3321428574
[2025-11-27 10:33:57] 2025-11-27 15:33:00,180 | INFO     | intersect: -9351049666.035746
[2025-11-27 10:33:57] 2025-11-27 15:33:00,181 | INFO     | chi2: 0.37492034627989146
[2025-11-27 10:33:57] 2025-11-27 15:33:00,181 | INFO     | current memory leak: 5.30 B/s (using 1120 data points, chi2=0.37)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | could have reported an average CPU frequency of 2620 MHz (42 samples)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | ..............................
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . Timing measurements:
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . get job = 0 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . initial setup = 2 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . payload setup = 5 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . stage-in = 0 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,182 | INFO     | . payload execution = 70165 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,183 | INFO     | . stage-out = 3 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,183 | INFO     | . log creation = 0 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,183 | INFO     | ..............................
[2025-11-27 10:33:57] 2025-11-27 15:33:00,306 | INFO     | 
[2025-11-27 10:33:57] 2025-11-27 15:33:00,306 | INFO     | job summary report
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | --------------------------------------------------
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | PanDA job id: 6897863916
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | task id: 47556173
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | errors: (none)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:33:57] 2025-11-27 15:33:00,307 | INFO     | pilot state: finished 
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | transexitcode: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | exeerrorcode: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | exeerrordiag: 
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | exitcode: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | exitmsg: OK
[2025-11-27 10:33:57] 2025-11-27 15:33:00,308 | INFO     | cpuconsumptiontime: 540923 s
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | nevents: 1000
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | neventsw: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | pid: 26546
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | pgrp: 26546
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | corecount: 8
[2025-11-27 10:33:57] 2025-11-27 15:33:00,309 | INFO     | event service: False
[2025-11-27 10:33:57] 2025-11-27 15:33:00,310 | INFO     | sizes: {0: 2284263, 1: 2284263, 4: 2284553, 12: 2284581, 70174: 2341209, 70179: 2350231, 70182: 2350415, 70187: 2350661}
[2025-11-27 10:33:57] 2025-11-27 15:33:00,310 | INFO     | --------------------------------------------------
[2025-11-27 10:33:57] 2025-11-27 15:33:00,310 | INFO     | 
[2025-11-27 10:33:57] 2025-11-27 15:33:00,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 10:33:57] 2025-11-27 15:33:00,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,329 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | job 6897863916 has completed (purged errors)
[2025-11-27 10:33:57] 2025-11-27 15:33:00,331 | INFO     | overall cleanup function is called
[2025-11-27 10:33:57] 2025-11-27 15:33:01,345 | INFO     | --- collectZombieJob: --- 10, [26546]
[2025-11-27 10:33:57] 2025-11-27 15:33:01,345 | INFO     | zombie collector waiting for pid 26546
[2025-11-27 10:33:57] 2025-11-27 15:33:01,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:33:57] 2025-11-27 15:33:01,345 | INFO     | collected zombie processes
[2025-11-27 10:33:57] 2025-11-27 15:33:01,345 | INFO     | will attempt to kill all subprocesses of pid=26546
[2025-11-27 10:33:57] 2025-11-27 15:33:01,537 | INFO     | process IDs to be killed: [26546] (in reverse order)
[2025-11-27 10:33:57] 2025-11-27 15:33:01,590 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:33:57] 2025-11-27 15:33:01,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:33:57] 2025-11-27 15:33:01,597 | INFO     | did not find any defunct processes belonging to 26546
[2025-11-27 10:33:57] 2025-11-27 15:33:01,602 | INFO     | did not find any defunct processes belonging to 26546
[2025-11-27 10:33:57] 2025-11-27 15:33:01,604 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:33:57] 2025-11-27 15:33:01,604 | INFO     | ready for new job
[2025-11-27 10:33:57] 2025-11-27 15:33:01,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:33:57] 2025-11-27 15:33:01,610 | INFO     | ***************************************
[2025-11-27 10:33:57] 2025-11-27 15:33:01,610 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:33:57] 2025-11-27 15:33:01,610 | INFO     | ***************************************
[2025-11-27 10:33:57] 2025-11-27 15:33:01,610 | INFO     | 
[2025-11-27 10:33:57] 2025-11-27 15:33:01,612 | INFO     | architecture information:
[2025-11-27 10:33:57] 2025-11-27 15:33:01,612 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:33:57] 2025-11-27 15:33:01,627 | INFO     | cat /etc/os-release:
[2025-11-27 10:33:57] NAME="CentOS Linux"
[2025-11-27 10:33:57] VERSION="7 (Core)"
[2025-11-27 10:33:57] ID="centos"
[2025-11-27 10:33:57] ID_LIKE="rhel fedora"
[2025-11-27 10:33:57] VERSION_ID="7"
[2025-11-27 10:33:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:33:57] ANSI_COLOR="0;31"
[2025-11-27 10:33:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:33:57] HOME_URL="https://www.centos.org/"
[2025-11-27 10:33:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:33:57] 
[2025-11-27 10:33:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:33:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:33:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:33:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:33:57] 
[2025-11-27 10:33:57] 2025-11-27 15:33:01,627 | INFO     | ***************************************
[2025-11-27 10:33:57] 2025-11-27 15:33:02,130 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 10:33:57] 2025-11-27 15:33:02,149 | INFO     | sufficient remaining disk space (26567770112 B)
[2025-11-27 10:33:57] 2025-11-27 15:33:02,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:33:57] 2025-11-27 15:33:02,150 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:33:57] 2025-11-27 15:33:02,150 | INFO     | update_server=False
[2025-11-27 10:33:57] 2025-11-27 15:33:02,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:33:57] 2025-11-27 15:33:02,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:33:57] 2025-11-27 15:33:02,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:33:57] 2025-11-27 15:33:02,324 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:33:57] 2025-11-27 15:33:02,324 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:33:57] 2025-11-27 15:33:02,324 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:33:57] 2025-11-27 15:33:02,325 | INFO     | will abort loop
[2025-11-27 10:33:57] 2025-11-27 15:33:02,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:33:57] 2025-11-27 15:33:03,029 | INFO     | all job control threads have been joined
[2025-11-27 10:33:57] 2025-11-27 15:33:03,155 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,159 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,187 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,230 | INFO     | all data control threads have been joined
[2025-11-27 10:33:57] 2025-11-27 15:33:03,282 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,293 | INFO     | [job] validate thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,330 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:03,432 | INFO     | all payload control threads have been joined
[2025-11-27 10:33:57] 2025-11-27 15:33:03,845 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,031 | INFO     | [job] control thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,209 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,235 | INFO     | [data] control thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,255 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,398 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,437 | INFO     | [payload] control thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:04,567 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:06,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:33:57] 2025-11-27 15:33:32,914 | INFO     | PID=20096 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 10:33:57] 2025-11-27 15:33:32,914 | INFO     | .. there are 3 such processes running
[2025-11-27 10:33:57] 2025-11-27 15:33:32,915 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:33:57] 2025-11-27 15:33:32,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:33:57] 2025-11-27 15:33:32,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:33:57] 2025-11-27 15:33:51,353 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:33:57] 2025-11-27 15:33:51,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678748452672)>', '<ExcThread(monitor, started 140678097008384)>']
[2025-11-27 10:33:57] 2025-11-27 15:33:52,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:33:57] 2025-11-27 15:33:52,001 | INFO     | [monitor] control thread has ended
[2025-11-27 10:33:57] 2025-11-27 15:33:56,804 | INFO     | all workflow threads have been joined
[2025-11-27 10:33:57] 2025-11-27 15:33:56,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:33:57] 2025-11-27 15:33:56,804 | INFO     | traces error code: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:56,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:33:57] 2025-11-27 15:33:56,930 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:33:57] 2025-11-27 15:33:56,932 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:33:57] 2025-11-27 15:33:56,935 [wrapper] pilotpid: 20096
[2025-11-27 10:33:57] 2025-11-27 15:33:56,937 [wrapper] Pilot exit status: 0
[2025-11-27 10:33:57] 2025-11-27 15:33:56,947 [wrapper] pandaids: 6897863916
[2025-11-27 10:33:57] 2025-11-27 15:33:56,989 [wrapper] cleanup supervisor_pilot  7645 20097
[2025-11-27 10:33:57] 2025-11-27 15:33:56,992 [wrapper] Test setup, not cleaning
[2025-11-27 10:33:57] 2025-11-27 15:33:56,994 [wrapper] apfmon messages muted
[2025-11-27 10:33:57] 2025-11-27 15:33:56,996 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:33:57] 2025-11-27 15:33:56,998 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:33:57]  *** Error codes and diagnostics ***
[2025-11-27 10:33:57]     "exeErrorCode": 0,
[2025-11-27 10:33:57]     "exeErrorDiag": "",
[2025-11-27 10:33:57]     "pilotErrorCode": 0,
[2025-11-27 10:33:57]     "pilotErrorDiag": "",
[2025-11-27 10:33:57]  *** Listing of results directory ***
[2025-11-27 10:33:57] total 1330360
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 10:33:57] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas       100 Nov 26 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:33:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 15:02 run_atlas
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas       105 Nov 26 15:02 job.xml
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas 411289202 Nov 26 15:02 EVNT.47483658._003130.pool.root.1
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 15:02 start_atlas.sh
[2025-11-27 10:33:57] drwxrwx--x 2 boincer umatlas      4096 Nov 26 15:02 shared
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 15:02 input.tar.gz
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas         0 Nov 26 15:02 boinc_lockfile
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 15:02 pandaJob.out
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas        57 Nov 26 15:02 setup.sh.local
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas    991522 Nov 26 15:02 agis_schedconf.cvmfs.json
[2025-11-27 10:33:57] drwx------ 5 boincer umatlas      4096 Nov 26 15:02 pilot3
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas       533 Nov 27 10:17 boinc_task_state.xml
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 10:28 init_data.xml
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas 922991290 Nov 27 10:32 HITS.47556173._000934.pool.root.1
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas      1068 Nov 27 10:32 memory_monitor_summary.json
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas   1516240 Nov 27 10:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas   2319468 Nov 27 10:32 log.47556173._000934.job.log.tgz.1
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas      8663 Nov 27 10:33 heartbeat.json
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas        95 Nov 27 10:33 pilot_heartbeat.json
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 10:33 boinc_mmap_file
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas        29 Nov 27 10:33 wrapper_checkpoint.txt
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas      5007 Nov 27 10:33 pilotlog.txt
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas   9724397 Nov 27 10:33 log.47556173._000934.job.log.1
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas       353 Nov 27 10:33 output.list
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas       620 Nov 27 10:33 runtime_log
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas  12062720 Nov 27 10:33 result.tar.gz
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas       667 Nov 27 10:33 VgOODmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmffMKDmXEXDJo.diag
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 10:33 runtime_log.err
[2025-11-27 10:33:57] -rw-r--r-- 1 boincer umatlas     21302 Nov 27 10:33 stderr.txt
[2025-11-27 10:33:57] HITS file was successfully produced:
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas 922991290 Nov 27 10:32 shared/HITS.pool.root.1
[2025-11-27 10:33:57]  *** Contents of shared directory: ***
[2025-11-27 10:33:57] total 1315392
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas 411289202 Nov 26 15:02 ATLAS.root_0
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 15:02 start_atlas.sh
[2025-11-27 10:33:57] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 15:02 input.tar.gz
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas 922991290 Nov 27 10:32 HITS.pool.root.1
[2025-11-27 10:33:57] -rw------- 1 boincer umatlas  12062720 Nov 27 10:33 result.tar.gz
10:33:59 (16418): run_atlas exited; CPU time 539800.588051
10:33:59 (16418): called boinc_finish(0)

</stderr_txt>
]]>

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