Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:11:19 (3016586): wrapper (7.7.26015): starting
19:11:19 (3016586): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 19:11:19] Arguments: --nthreads 9
[2025-11-26 19:11:19] Threads: 9
[2025-11-26 19:11:19] Checking for CVMFS
[2025-11-26 19:11:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:11:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:11:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:11:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:11:22] 2.13.3.0 12161 30753 344344 153340 3 532 23184130 40960001 17784 16776704 0 80421633 99.549 93941909 38059 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:11:22] CVMFS is ok
[2025-11-26 19:11:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:11:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:11:22] Further information can be found at the LHC@home message board.
[2025-11-26 19:11:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:11:22] Checking for apptainer binary...
[2025-11-26 19:11:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:11:22] Running /usr/bin/apptainer --version
[2025-11-26 19:11:22] apptainer version 1.4.4-1.el9
[2025-11-26 19:11:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:11:22] c6-5-7-1.aglt2.org
[2025-11-26 19:11:22] apptainer works
[2025-11-26 19:11:22] Set ATHENA_PROC_NUMBER=9
[2025-11-26 19:11:22] Set ATHENA_CORE_NUMBER=9
[2025-11-26 19:11:23] Starting ATLAS job with PandaID=6896045243
[2025-11-26 19:11:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:03:14]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:03:14] 2025-11-28 13:02:22,317 | INFO     | job 6896045243 has finished - writing final server update
[2025-11-28 08:03:14] 2025-11-28 13:02:22,317 | INFO     | total number of processed events: 1000 (read)
[2025-11-28 08:03:14] 2025-11-28 13:02:22,322 | INFO     | executing command: lscpu
[2025-11-28 08:03:14] 2025-11-28 13:02:22,393 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-28 08:03:14] 2025-11-28 13:02:22,929 | INFO     | monitor loop #7756: job 0:6896045243 is in state 'finished'
[2025-11-28 08:03:14] 2025-11-28 13:02:22,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:03:14] 2025-11-28 13:02:23,632 | INFO     | PID=3020941 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-28 08:03:14] 2025-11-28 13:02:23,632 | INFO     | .. there are 24 such processes running
[2025-11-28 08:03:14] 2025-11-28 13:02:24,634 | INFO     | time since job start (132621s) is within the limit (172800.0s)
[2025-11-28 08:03:14] 2025-11-28 13:02:25,441 | INFO     | monitor loop #7757: job 0:6896045243 is in state 'finished'
[2025-11-28 08:03:14] 2025-11-28 13:02:25,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:03:14] 2025-11-28 13:02:26,641 | INFO     | time since job start (132623s) is within the limit (172800.0s)
[2025-11-28 08:03:14] 2025-11-28 13:02:27,947 | INFO     | monitor loop #7758: job 0:6896045243 is in state 'finished'
[2025-11-28 08:03:14] 2025-11-28 13:02:27,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:03:14] 2025-11-28 13:02:28,627 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 08:03:14] 2025-11-28 13:02:28,646 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2865.3814285714298
[2025-11-28 08:03:14] 2025-11-28 13:02:28,649 | INFO     | time since job start (132625s) is within the limit (172800.0s)
[2025-11-28 08:03:14] 2025-11-28 13:02:28,664 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896045243/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:03:14] 2025-11-28 13:02:28,670 | INFO     | extracted standard info from prmon json
[2025-11-28 08:03:14] 2025-11-28 13:02:28,670 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:03:14] 2025-11-28 13:02:28,670 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:03:14] 2025-11-28 13:02:28,751 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:03:14] 2025-11-28 13:02:28,754 | INFO     | sum of square deviations: 3177479517598.024
[2025-11-28 08:03:14] 2025-11-28 13:02:29,326 | INFO     | sum of deviations: 6489325043497.875
[2025-11-28 08:03:14] 2025-11-28 13:02:29,327 | INFO     | mean x: 1764268658.4788213
[2025-11-28 08:03:14] 2025-11-28 13:02:29,327 | INFO     | mean y: 3092476.355893186
[2025-11-28 08:03:14] 2025-11-28 13:02:29,327 | INFO     | intersect: -3600050431.573747
[2025-11-28 08:03:14] 2025-11-28 13:02:29,329 | INFO     | chi2: 16.71716115604297
[2025-11-28 08:03:14] 2025-11-28 13:02:29,353 | INFO     | sum of square deviations: 3155589303688.5493
[2025-11-28 08:03:14] 2025-11-28 13:02:29,870 | INFO     | sum of deviations: 7270029810156.384
[2025-11-28 08:03:14] 2025-11-28 13:02:29,871 | INFO     | mean x: 1764268505.9856944
[2025-11-28 08:03:14] 2025-11-28 13:02:29,871 | INFO     | mean y: 3097915.366866636
[2025-11-28 08:03:14] 2025-11-28 13:02:29,871 | INFO     | intersect: -4061526279.1198807
[2025-11-28 08:03:14] 2025-11-28 13:02:29,915 | INFO     | chi2: 13.559118173421885
[2025-11-28 08:03:14] 2025-11-28 13:02:29,915 | INFO     | current chi2=13.559118173421885 (change=18.891024338061765 %)
[2025-11-28 08:03:14] 2025-11-28 13:02:29,915 | INFO     | right removable region: 2166
[2025-11-28 08:03:14] 2025-11-28 13:02:29,923 | INFO     | sum of square deviations: 3155585356988.559
[2025-11-28 08:03:14] 2025-11-28 13:02:29,997 | INFO     | sum of deviations: 5675318885185.133
[2025-11-28 08:03:14] 2025-11-28 13:02:29,997 | INFO     | mean x: 1764268810.9856944
[2025-11-28 08:03:14] 2025-11-28 13:02:29,997 | INFO     | mean y: 3098145.005076142
[2025-11-28 08:03:14] 2025-11-28 13:02:29,997 | INFO     | intersect: -3169938540.361484
[2025-11-28 08:03:14] 2025-11-28 13:02:30,000 | INFO     | chi2: 13.53779358348105
[2025-11-28 08:03:14] 2025-11-28 13:02:30,000 | INFO     | current chi2=13.53779358348105 (change=19.018585409835755 %)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,000 | INFO     | left removable region: 10
[2025-11-28 08:03:14] 2025-11-28 13:02:30,003 | INFO     | sum of square deviations: 3107778325046.988
[2025-11-28 08:03:14] 2025-11-28 13:02:30,128 | INFO     | sum of deviations: 6366178455495.25
[2025-11-28 08:03:14] 2025-11-28 13:02:30,135 | INFO     | mean x: 1764268780.497681
[2025-11-28 08:03:14] 2025-11-28 13:02:30,135 | INFO     | mean y: 3105668.548701299
[2025-11-28 08:03:14] 2025-11-28 13:02:30,136 | INFO     | intersect: -3610939068.679267
[2025-11-28 08:03:14] 2025-11-28 13:02:30,138 | INFO     | chi2: 9.980971745935774
[2025-11-28 08:03:14] 2025-11-28 13:02:30,139 | INFO     | current memory leak: 2.05 B/s (using 2156 data points, chi2=9.98)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,142 | INFO     | could have reported an average CPU frequency of 2820 MHz (75 samples)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | ..............................
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . Timing measurements:
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . get job = 0 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . initial setup = 5 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . payload setup = 33 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . stage-in = 0 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . payload execution = 132513 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . stage-out = 5 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | . log creation = 1 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,143 | INFO     | ..............................
[2025-11-28 08:03:14] 2025-11-28 13:02:30,628 | INFO     | 
[2025-11-28 08:03:14] 2025-11-28 13:02:30,628 | INFO     | job summary report
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | --------------------------------------------------
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | PanDA job id: 6896045243
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | task id: 47556173
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | errors: (none)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | pilot state: finished 
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | transexitcode: 0
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | exeerrorcode: 0
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | exeerrordiag: 
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | exitcode: 0
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | exitmsg: OK
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | cpuconsumptiontime: 262278 s
[2025-11-28 08:03:14] 2025-11-28 13:02:30,629 | INFO     | nevents: 1000
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | neventsw: 0
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | pid: 3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | pgrp: 3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | corecount: 9
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | event service: False
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 28: 2284658, 33: 2284686, 132550: 2371234, 132557: 2380228, 132558: 2380284, 132566: 2380530}
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | --------------------------------------------------
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | 
[2025-11-28 08:03:14] 2025-11-28 13:02:30,630 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 08:03:14] 2025-11-28 13:02:30,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,656 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,658 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:03:14] 2025-11-28 13:02:30,659 | INFO     | job 6896045243 has completed (purged errors)
[2025-11-28 08:03:14] 2025-11-28 13:02:30,659 | INFO     | overall cleanup function is called
[2025-11-28 08:03:14] 2025-11-28 13:02:31,677 | INFO     | --- collectZombieJob: --- 10, [3029433]
[2025-11-28 08:03:14] 2025-11-28 13:02:31,677 | INFO     | zombie collector waiting for pid 3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:31,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:03:14] 2025-11-28 13:02:31,678 | INFO     | collected zombie processes
[2025-11-28 08:03:14] 2025-11-28 13:02:31,678 | INFO     | will attempt to kill all subprocesses of pid=3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:32,016 | INFO     | process IDs to be killed: [3029433] (in reverse order)
[2025-11-28 08:03:14] 2025-11-28 13:02:32,148 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:03:14] 2025-11-28 13:02:32,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:03:14] 2025-11-28 13:02:32,163 | INFO     | did not find any defunct processes belonging to 3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:32,201 | INFO     | did not find any defunct processes belonging to 3029433
[2025-11-28 08:03:14] 2025-11-28 13:02:32,205 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:03:14] 2025-11-28 13:02:32,205 | INFO     | ready for new job
[2025-11-28 08:03:14] 2025-11-28 13:02:32,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:03:14] 2025-11-28 13:02:32,219 | INFO     | ***************************************
[2025-11-28 08:03:14] 2025-11-28 13:02:32,219 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:03:14] 2025-11-28 13:02:32,219 | INFO     | ***************************************
[2025-11-28 08:03:14] 2025-11-28 13:02:32,219 | INFO     | 
[2025-11-28 08:03:14] 2025-11-28 13:02:32,223 | INFO     | architecture information:
[2025-11-28 08:03:14] 2025-11-28 13:02:32,224 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:03:14] 2025-11-28 13:02:32,248 | INFO     | cat /etc/os-release:
[2025-11-28 08:03:14] NAME="CentOS Linux"
[2025-11-28 08:03:14] VERSION="7 (Core)"
[2025-11-28 08:03:14] ID="centos"
[2025-11-28 08:03:14] ID_LIKE="rhel fedora"
[2025-11-28 08:03:14] VERSION_ID="7"
[2025-11-28 08:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:03:14] ANSI_COLOR="0;31"
[2025-11-28 08:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:03:14] HOME_URL="https://www.centos.org/"
[2025-11-28 08:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:03:14] 
[2025-11-28 08:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:03:14] 
[2025-11-28 08:03:14] 2025-11-28 13:02:32,248 | INFO     | ***************************************
[2025-11-28 08:03:14] 2025-11-28 13:02:32,753 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 08:03:14] 2025-11-28 13:02:32,792 | INFO     | sufficient remaining disk space (71201456128 B)
[2025-11-28 08:03:14] 2025-11-28 13:02:32,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:03:14] 2025-11-28 13:02:32,793 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:03:14] 2025-11-28 13:02:32,793 | INFO     | update_server=False
[2025-11-28 08:03:14] 2025-11-28 13:02:32,793 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:03:14] 2025-11-28 13:02:32,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:03:14] 2025-11-28 13:02:32,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:03:14] 2025-11-28 13:02:33,000 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 08:03:14] 2025-11-28 13:02:33,001 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 08:03:14] 2025-11-28 13:02:33,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:03:14] 2025-11-28 13:02:33,001 | INFO     | will abort loop
[2025-11-28 08:03:14] 2025-11-28 13:02:33,101 | INFO     | all data control threads have been joined
[2025-11-28 08:03:14] 2025-11-28 13:02:33,536 | INFO     | all job control threads have been joined
[2025-11-28 08:03:14] 2025-11-28 13:02:33,799 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,007 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,014 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,107 | INFO     | [data] control thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,116 | INFO     | all payload control threads have been joined
[2025-11-28 08:03:14] 2025-11-28 13:02:34,314 | INFO     | [job] validate thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,402 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,542 | INFO     | [job] control thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,563 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,801 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,915 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:34,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:35,091 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:35,123 | INFO     | [payload] control thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:35,251 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:03:14] 2025-11-28 13:02:36,257 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:02:36,932 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:03:14] 2025-11-28 13:03:02,484 | INFO     | PID=3020941 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:03:14] 2025-11-28 13:03:02,485 | INFO     | .. there are 23 such processes running
[2025-11-28 08:03:14] 2025-11-28 13:03:02,510 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:03:14] 2025-11-28 13:03:02,510 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:03:14] 2025-11-28 13:03:02,510 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:03:14] 2025-11-28 13:03:09,013 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:03:14] 2025-11-28 13:03:09,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421603956544)>', '<ExcThread(monitor, started 140421111990016)>']
[2025-11-28 08:03:14] 2025-11-28 13:03:09,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:03:14] 2025-11-28 13:03:09,579 | INFO     | [monitor] control thread has ended
[2025-11-28 08:03:14] 2025-11-28 13:03:14,307 | INFO     | all workflow threads have been joined
[2025-11-28 08:03:14] 2025-11-28 13:03:14,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:03:14] 2025-11-28 13:03:14,308 | INFO     | traces error code: 0
[2025-11-28 08:03:14] 2025-11-28 13:03:14,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:03:14] 2025-11-28 13:03:14,612 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:03:14] 2025-11-28 13:03:14,632 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:03:14] 2025-11-28 13:03:14,638 [wrapper] pilotpid: 3020941
[2025-11-28 08:03:14] 2025-11-28 13:03:14,663 [wrapper] Pilot exit status: 0
[2025-11-28 08:03:14] 2025-11-28 13:03:14,683 [wrapper] pandaids: 6896045243
[2025-11-28 08:03:14] 2025-11-28 13:03:14,775 [wrapper] cleanup supervisor_pilot  560943 3020942
[2025-11-28 08:03:14] 2025-11-28 13:03:14,780 [wrapper] Test setup, not cleaning
[2025-11-28 08:03:14] 2025-11-28 13:03:14,785 [wrapper] apfmon messages muted
[2025-11-28 08:03:14] 2025-11-28 13:03:14,791 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:03:14] 2025-11-28 13:03:14,794 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:03:14]  *** Error codes and diagnostics ***
[2025-11-28 08:03:14]     "exeErrorCode": 0,
[2025-11-28 08:03:14]     "exeErrorDiag": "",
[2025-11-28 08:03:14]     "pilotErrorCode": 0,
[2025-11-28 08:03:14]     "pilotErrorDiag": "",
[2025-11-28 08:03:14]  *** Listing of results directory ***
[2025-11-28 08:03:14] total 1346232
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:51 queuedata.json
[2025-11-28 08:03:14] -rwx------. 1 boincer umatlas     36292 Nov 24 13:52 runpilot2-wrapper.sh
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:03:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:11 run_atlas
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:11 job.xml
[2025-11-28 08:03:14] -rw-r--r--. 2 boincer umatlas 409092304 Nov 26 19:11 EVNT.47483658._003036.pool.root.1
[2025-11-28 08:03:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:11 start_atlas.sh
[2025-11-28 08:03:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:11 shared
[2025-11-28 08:03:14] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:11 input.tar.gz
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:11 boinc_lockfile
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 19:11 pandaJob.out
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas        57 Nov 26 19:11 setup.sh.local
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas    991538 Nov 26 19:11 agis_schedconf.cvmfs.json
[2025-11-28 08:03:14] drwx------. 5 boincer umatlas      4096 Nov 26 19:12 pilot3
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas       534 Nov 28 06:35 boinc_task_state.xml
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas 926653202 Nov 28 08:01 HITS.47556173._000184.pool.root.1
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas      1059 Nov 28 08:02 memory_monitor_summary.json
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas   1516240 Nov 28 08:02 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas   3058199 Nov 28 08:02 log.47556173._000184.job.log.tgz.1
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas      6842 Nov 28 08:02 init_data.xml
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas      8628 Nov 28 08:02 heartbeat.json
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas        95 Nov 28 08:03 pilot_heartbeat.json
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 08:03 boinc_mmap_file
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas        30 Nov 28 08:03 wrapper_checkpoint.txt
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas      5010 Nov 28 08:03 pilotlog.txt
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas  16379117 Nov 28 08:03 log.47556173._000184.job.log.1
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas       353 Nov 28 08:03 output.list
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas       620 Nov 28 08:03 runtime_log
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas  19456000 Nov 28 08:03 result.tar.gz
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas      9344 Nov 28 08:03 runtime_log.err
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas       663 Nov 28 08:03 84kKDmoqqh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmw9IKDmBpthXo.diag
[2025-11-28 08:03:14] -rw-r--r--. 1 boincer umatlas     21883 Nov 28 08:03 stderr.txt
[2025-11-28 08:03:14] HITS file was successfully produced:
[2025-11-28 08:03:14] -rw-------. 1 boincer umatlas 926653202 Nov 28 08:01 shared/HITS.pool.root.1
[2025-11-28 08:03:15]  *** Contents of shared directory: ***
[2025-11-28 08:03:15] total 1324048
[2025-11-28 08:03:15] -rw-r--r--. 2 boincer umatlas 409092304 Nov 26 19:11 ATLAS.root_0
[2025-11-28 08:03:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:11 start_atlas.sh
[2025-11-28 08:03:15] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 19:11 input.tar.gz
[2025-11-28 08:03:15] -rw-------. 1 boincer umatlas 926653202 Nov 28 08:01 HITS.pool.root.1
[2025-11-28 08:03:15] -rw-------. 1 boincer umatlas  19456000 Nov 28 08:03 result.tar.gz
08:03:16 (3016586): run_atlas exited; CPU time 265338.034025
08:03:16 (3016586): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN