Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:56:18 (142429): wrapper (7.7.26015): starting
17:56:18 (142429): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:56:18] Arguments: --nthreads 8
[2025-11-26 17:56:18] Threads: 8
[2025-11-26 17:56:18] Checking for CVMFS
[2025-11-26 17:56:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:56:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:56:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:56:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:56:18] 2.13.3.0 12497 30543 237416 153337 0 547 25485386 32935936 41689 16776704 0 161250860 99.507 197963246 37082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:56:18] CVMFS is ok
[2025-11-26 17:56:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:56:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:56:18] Further information can be found at the LHC@home message board.
[2025-11-26 17:56:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:56:18] Checking for apptainer binary...
[2025-11-26 17:56:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:56:18] Running /usr/bin/apptainer --version
[2025-11-26 17:56:18] apptainer version 1.4.4-1.el9
[2025-11-26 17:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:56:19] c7-7-35.aglt2.org
[2025-11-26 17:56:19] apptainer works
[2025-11-26 17:56:19] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:56:19] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:56:19] Starting ATLAS job with PandaID=6897863956
[2025-11-26 17:56:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:38:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:38:20] 2025-11-27 11:37:45,187 | INFO     | monitor loop #2721: job 0:6897863956 is in state 'finished'
[2025-11-27 06:38:20] 2025-11-27 11:37:45,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,594 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:38:20] 2025-11-27 11:37:45,600 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3068.9933958333336
[2025-11-27 06:38:20] 2025-11-27 11:37:45,615 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897863956/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,616 | INFO     | extracted standard info from prmon json
[2025-11-27 06:38:20] 2025-11-27 11:37:45,616 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:38:20] 2025-11-27 11:37:45,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:38:20] 2025-11-27 11:37:45,626 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:38:20] 2025-11-27 11:37:45,629 | INFO     | sum of square deviations: 129773086323.69331
[2025-11-27 06:38:20] 2025-11-27 11:37:45,665 | INFO     | sum of deviations: 841577353068.6875
[2025-11-27 06:38:20] 2025-11-27 11:37:45,665 | INFO     | mean x: 1764220624.5842247
[2025-11-27 06:38:20] 2025-11-27 11:37:45,665 | INFO     | mean y: 2882747.719251337
[2025-11-27 06:38:20] 2025-11-27 11:37:45,665 | INFO     | intersect: -11438072888.978928
[2025-11-27 06:38:20] 2025-11-27 11:37:45,666 | INFO     | chi2: 9.186474759140125
[2025-11-27 06:38:20] 2025-11-27 11:37:45,667 | INFO     | sum of square deviations: 127188299157.77629
[2025-11-27 06:38:20] 2025-11-27 11:37:45,719 | INFO     | sum of deviations: 1121544905356.5771
[2025-11-27 06:38:20] 2025-11-27 11:37:45,719 | INFO     | mean x: 1764220472.0915208
[2025-11-27 06:38:20] 2025-11-27 11:37:45,720 | INFO     | mean y: 2899266.32974428
[2025-11-27 06:38:20] 2025-11-27 11:37:45,720 | INFO     | intersect: -15553975819.683588
[2025-11-27 06:38:20] 2025-11-27 11:37:45,720 | INFO     | chi2: 5.256988504531293
[2025-11-27 06:38:20] 2025-11-27 11:37:45,721 | INFO     | current chi2=5.256988504531293 (change=42.77469168136746 %)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,721 | INFO     | sum of square deviations: 124638070779.27937
[2025-11-27 06:38:20] 2025-11-27 11:37:45,786 | INFO     | sum of deviations: 1328737624581.0037
[2025-11-27 06:38:20] 2025-11-27 11:37:45,786 | INFO     | mean x: 1764220319.598916
[2025-11-27 06:38:20] 2025-11-27 11:37:45,786 | INFO     | mean y: 2911635.753387534
[2025-11-27 06:38:20] 2025-11-27 11:37:45,787 | INFO     | intersect: -18805032855.40216
[2025-11-27 06:38:20] 2025-11-27 11:37:45,798 | INFO     | chi2: 2.6731851591009983
[2025-11-27 06:38:20] 2025-11-27 11:37:45,799 | INFO     | current chi2=2.6731851591009983 (change=49.149876268574104 %)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,799 | INFO     | sum of square deviations: 122121988434.52934
[2025-11-27 06:38:20] 2025-11-27 11:37:45,823 | INFO     | sum of deviations: 1287735887445.3918
[2025-11-27 06:38:20] 2025-11-27 11:37:45,823 | INFO     | mean x: 1764220167.100955
[2025-11-27 06:38:20] 2025-11-27 11:37:45,823 | INFO     | mean y: 2909146.440654843
[2025-11-27 06:38:20] 2025-11-27 11:37:45,823 | INFO     | intersect: -18600207717.716564
[2025-11-27 06:38:20] 2025-11-27 11:37:45,824 | INFO     | chi2: 2.6463006435332717
[2025-11-27 06:38:20] 2025-11-27 11:37:45,824 | INFO     | current chi2=2.6463006435332717 (change=1.0057109391093584 %)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,824 | INFO     | right removable region: 732
[2025-11-27 06:38:20] 2025-11-27 11:37:45,825 | INFO     | sum of square deviations: 127187849832.95833
[2025-11-27 06:38:20] 2025-11-27 11:37:45,849 | INFO     | sum of deviations: 638234575317.6622
[2025-11-27 06:38:20] 2025-11-27 11:37:45,849 | INFO     | mean x: 1764220777.090175
[2025-11-27 06:38:20] 2025-11-27 11:37:45,849 | INFO     | mean y: 2894723.213997308
[2025-11-27 06:38:20] 2025-11-27 11:37:45,850 | INFO     | intersect: -8850047597.23213
[2025-11-27 06:38:20] 2025-11-27 11:37:45,854 | INFO     | chi2: 7.030138955589677
[2025-11-27 06:38:20] 2025-11-27 11:37:45,854 | INFO     | current chi2=7.030138955589677 (change=23.47294103654933 %)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,855 | INFO     | left removable region: 10
[2025-11-27 06:38:20] 2025-11-27 11:37:45,855 | INFO     | sum of square deviations: 116705876477.85593
[2025-11-27 06:38:20] 2025-11-27 11:37:45,874 | INFO     | sum of deviations: 1030832270120.1302
[2025-11-27 06:38:20] 2025-11-27 11:37:45,878 | INFO     | mean x: 1764220441.6094184
[2025-11-27 06:38:20] 2025-11-27 11:37:45,878 | INFO     | mean y: 2923639.333795014
[2025-11-27 06:38:20] 2025-11-27 11:37:45,878 | INFO     | intersect: -15579970878.935335
[2025-11-27 06:38:20] 2025-11-27 11:37:45,879 | INFO     | chi2: 0.39092539749894045
[2025-11-27 06:38:20] 2025-11-27 11:37:45,879 | INFO     | current memory leak: 8.83 B/s (using 722 data points, chi2=0.39)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | could have reported an average CPU frequency of 3149 MHz (29 samples)
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | ..............................
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . Timing measurements:
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . get job = 0 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . initial setup = 2 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . payload setup = 12 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . stage-in = 0 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . payload execution = 45607 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . stage-out = 5 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | . log creation = 1 s
[2025-11-27 06:38:20] 2025-11-27 11:37:45,880 | INFO     | ..............................
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | 
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | job summary report
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | --------------------------------------------------
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | PanDA job id: 6897863956
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | task id: 47556161
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | errors: (none)
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | pilot state: finished 
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | transexitcode: 0
[2025-11-27 06:38:20] 2025-11-27 11:37:46,070 | INFO     | exeerrorcode: 0
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | exeerrordiag: 
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | exitcode: 0
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | exitmsg: OK
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | cpuconsumptiontime: 203594 s
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | nevents: 1000
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | neventsw: 0
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | pid: 154080
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | pgrp: 154080
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | corecount: 8
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | event service: False
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | sizes: {0: 2284094, 1: 2284293, 9: 2284555, 12: 2284583, 45624: 2330569, 45631: 2339747, 45647: 2339937}
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | --------------------------------------------------
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | 
[2025-11-27 06:38:20] 2025-11-27 11:37:46,071 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 06:38:20] 2025-11-27 11:37:46,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | job 6897863956 has completed (purged errors)
[2025-11-27 06:38:20] 2025-11-27 11:37:46,187 | INFO     | overall cleanup function is called
[2025-11-27 06:38:20] 2025-11-27 11:37:47,231 | INFO     | --- collectZombieJob: --- 10, [154080]
[2025-11-27 06:38:20] 2025-11-27 11:37:47,231 | INFO     | zombie collector waiting for pid 154080
[2025-11-27 06:38:20] 2025-11-27 11:37:47,231 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:38:20] 2025-11-27 11:37:47,231 | INFO     | collected zombie processes
[2025-11-27 06:38:20] 2025-11-27 11:37:47,231 | INFO     | will attempt to kill all subprocesses of pid=154080
[2025-11-27 06:38:20] 2025-11-27 11:37:48,530 | INFO     | process IDs to be killed: [154080] (in reverse order)
[2025-11-27 06:38:20] 2025-11-27 11:37:48,782 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:38:20] 2025-11-27 11:37:48,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:38:20] 2025-11-27 11:37:48,907 | INFO     | did not find any defunct processes belonging to 154080
[2025-11-27 06:38:20] 2025-11-27 11:37:48,982 | INFO     | did not find any defunct processes belonging to 154080
[2025-11-27 06:38:20] 2025-11-27 11:37:48,983 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:38:20] 2025-11-27 11:37:48,983 | INFO     | ready for new job
[2025-11-27 06:38:20] 2025-11-27 11:37:48,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:38:20] 2025-11-27 11:37:48,986 | INFO     | ***************************************
[2025-11-27 06:38:20] 2025-11-27 11:37:48,986 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:38:20] 2025-11-27 11:37:48,986 | INFO     | ***************************************
[2025-11-27 06:38:20] 2025-11-27 11:37:48,986 | INFO     | 
[2025-11-27 06:38:20] 2025-11-27 11:37:49,008 | INFO     | architecture information:
[2025-11-27 06:38:20] 2025-11-27 11:37:49,012 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:38:20] 2025-11-27 11:37:49,058 | INFO     | cat /etc/os-release:
[2025-11-27 06:38:20] NAME="CentOS Linux"
[2025-11-27 06:38:20] VERSION="7 (Core)"
[2025-11-27 06:38:20] ID="centos"
[2025-11-27 06:38:20] ID_LIKE="rhel fedora"
[2025-11-27 06:38:20] VERSION_ID="7"
[2025-11-27 06:38:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:38:20] ANSI_COLOR="0;31"
[2025-11-27 06:38:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:38:20] HOME_URL="https://www.centos.org/"
[2025-11-27 06:38:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:38:20] 
[2025-11-27 06:38:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:38:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:38:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:38:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:38:20] 
[2025-11-27 06:38:20] 2025-11-27 11:37:49,058 | INFO     | ***************************************
[2025-11-27 06:38:20] 2025-11-27 11:37:49,562 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 06:38:20] 2025-11-27 11:37:49,650 | INFO     | sufficient remaining disk space (67931996160 B)
[2025-11-27 06:38:20] 2025-11-27 11:37:49,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:38:20] 2025-11-27 11:37:49,654 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:38:20] 2025-11-27 11:37:49,654 | INFO     | update_server=False
[2025-11-27 06:38:20] 2025-11-27 11:37:49,654 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:38:20] 2025-11-27 11:37:49,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:38:20] 2025-11-27 11:37:49,655 | INFO     | aborting loop
[2025-11-27 06:38:20] 2025-11-27 11:37:49,809 | INFO     | all data control threads have been joined
[2025-11-27 06:38:20] 2025-11-27 11:37:50,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:38:20] 2025-11-27 11:37:50,437 | INFO     | all payload control threads have been joined
[2025-11-27 06:38:20] 2025-11-27 11:37:50,660 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:50,663 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:50,815 | INFO     | [data] control thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:50,825 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:38:20] 2025-11-27 11:37:51,032 | INFO     | all job control threads have been joined
[2025-11-27 06:38:20] 2025-11-27 11:37:51,049 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:38:20] 2025-11-27 11:37:51,433 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,440 | INFO     | [job] validate thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,443 | INFO     | [payload] control thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,649 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,835 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:51,935 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:52,038 | INFO     | [job] control thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:52,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:52,095 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:53,015 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:54,242 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:38:20] 2025-11-27 11:37:58,361 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:38:20] 2025-11-27 11:37:59,367 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759940208448)>', '<ExcThread(monitor, started 139759301158656)>']
[2025-11-27 06:38:20] 2025-11-27 11:38:04,392 | INFO     | all workflow threads have been joined
[2025-11-27 06:38:20] 2025-11-27 11:38:04,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:38:20] 2025-11-27 11:38:04,392 | INFO     | traces error code: 0
[2025-11-27 06:38:20] 2025-11-27 11:38:04,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:38:20] 2025-11-27 11:38:19,335 | INFO     | PID=146857 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 06:38:20] 2025-11-27 11:38:19,336 | INFO     | .. there are 61 such processes running
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 06:38:20] 2025-11-27 11:38:19,337 | INFO     | [monitor] control thread has ended
[2025-11-27 06:38:20] 2025-11-27 11:38:19,498 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:38:20] 2025-11-27 11:38:19,546 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:38:20] 2025-11-27 11:38:19,564 [wrapper] pilotpid: 146857
[2025-11-27 06:38:20] 2025-11-27 11:38:19,585 [wrapper] Pilot exit status: 0
[2025-11-27 06:38:20] 2025-11-27 11:38:19,733 [wrapper] pandaids: 6897863956
[2025-11-27 06:38:20] 2025-11-27 11:38:19,996 [wrapper] cleanup supervisor_pilot  189412 146858
[2025-11-27 06:38:20] 2025-11-27 11:38:19,999 [wrapper] Test setup, not cleaning
[2025-11-27 06:38:20] 2025-11-27 11:38:20,002 [wrapper] apfmon messages muted
[2025-11-27 06:38:20] 2025-11-27 11:38:20,010 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:38:20] 2025-11-27 11:38:20,025 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:38:20]  *** Error codes and diagnostics ***
[2025-11-27 06:38:20]     "exeErrorCode": 0,
[2025-11-27 06:38:20]     "exeErrorDiag": "",
[2025-11-27 06:38:20]     "pilotErrorCode": 0,
[2025-11-27 06:38:20]     "pilotErrorDiag": "",
[2025-11-27 06:38:20]  *** Listing of results directory ***
[2025-11-27 06:38:20] total 1328936
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 06:38:20] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:38:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:56 run_atlas
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:56 job.xml
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas 412381401 Nov 26 17:56 EVNT.47483658._002340.pool.root.1
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 17:56 input.tar.gz
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 06:38:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:56 shared
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:56 boinc_lockfile
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 17:56 pandaJob.out
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas        57 Nov 26 17:56 setup.sh.local
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas    991546 Nov 26 17:56 agis_schedconf.cvmfs.json
[2025-11-27 06:38:20] drwx------. 5 boincer umatlas      4096 Nov 26 17:56 pilot3
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas       532 Nov 27 06:25 boinc_task_state.xml
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas 929120538 Nov 27 06:36 HITS.47556161._003230.pool.root.1
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas      1070 Nov 27 06:37 memory_monitor_summary.json
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas   1955990 Nov 27 06:37 log.47556161._003230.job.log.tgz.1
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas      8627 Nov 27 06:37 heartbeat.json
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 06:37 init_data.xml
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas        95 Nov 27 06:38 pilot_heartbeat.json
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas       892 Nov 27 06:38 pilotlog.txt
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:38 boinc_mmap_file
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas   5746896 Nov 27 06:38 log.47556161._003230.job.log.1
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas       353 Nov 27 06:38 output.list
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:38 runtime_log
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas   7720960 Nov 27 06:38 result.tar.gz
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 06:38 runtime_log.err
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas       664 Nov 27 06:38 Or5KDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmajJKDmICUSkm.diag
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:38 wrapper_checkpoint.txt
[2025-11-27 06:38:20] -rw-r--r--. 1 boincer umatlas     21287 Nov 27 06:38 stderr.txt
[2025-11-27 06:38:20] HITS file was successfully produced:
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas 929120538 Nov 27 06:36 shared/HITS.pool.root.1
[2025-11-27 06:38:20]  *** Contents of shared directory: ***
[2025-11-27 06:38:20] total 1318212
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas 412381401 Nov 26 17:56 ATLAS.root_0
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 17:56 input.tar.gz
[2025-11-27 06:38:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas 929120538 Nov 27 06:36 HITS.pool.root.1
[2025-11-27 06:38:20] -rw-------. 1 boincer umatlas   7720960 Nov 27 06:38 result.tar.gz
06:38:22 (142429): run_atlas exited; CPU time 204501.552468
06:38:22 (142429): called boinc_finish(0)

</stderr_txt>
]]>

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