Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:58:33 (3035124): wrapper (7.7.26015): starting
15:58:33 (3035124): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:58:33] Arguments: --nthreads 8
[2025-11-26 15:58:33] Threads: 8
[2025-11-26 15:58:33] Checking for CVMFS
[2025-11-26 15:58:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:58:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:58:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:58:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:58:35] 2.13.3.0 11379 30560 334928 153334 2 489 18200633 32935937 30432 16776704 0 112564873 99.436 158073163 39175 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:58:35] CVMFS is ok
[2025-11-26 15:58:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:58:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:58:35] Further information can be found at the LHC@home message board.
[2025-11-26 15:58:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:58:35] Checking for apptainer binary...
[2025-11-26 15:58:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:58:35] Running /usr/bin/apptainer --version
[2025-11-26 15:58:35] apptainer version 1.4.4-1.el9
[2025-11-26 15:58:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:58:35] c6-4-5-1.aglt2.org
[2025-11-26 15:58:35] apptainer works
[2025-11-26 15:58:35] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:58:35] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:58:36] Starting ATLAS job with PandaID=6897759761
[2025-11-26 15:58:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:10 (3035124): BOINC client no longer exists - exiting
16:40:10 (3035124): timer handler: client dead, exiting
16:45:53 (3306078): wrapper (7.7.26015): starting
16:45:53 (3306078): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:53] Arguments: --nthreads 8
[2025-11-26 16:45:53] Threads: 8
[2025-11-26 16:45:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:45:53] Checking for CVMFS
[2025-11-26 16:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:54] 2.13.3.0 11379 30608 329344 153335 2 451 18584503 32935936 28735 16776704 0 113219709 99.439 158163117 39170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:54] CVMFS is ok
[2025-11-26 16:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:54] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:54] Checking for apptainer binary...
[2025-11-26 16:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:54] Running /usr/bin/apptainer --version
[2025-11-26 16:45:54] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:54] c6-4-5-1.aglt2.org
[2025-11-26 16:45:54] apptainer works
[2025-11-26 16:45:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:54] Starting ATLAS job with PandaID=6897759761
[2025-11-26 16:45:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:57:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:57:47] 2025-11-27 12:56:43,695 | INFO     | time since job start (54640s) is within the limit (172800.0s)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,707 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:57:47] 2025-11-27 12:56:43,712 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2950.6734062499995
[2025-11-27 07:57:47] 2025-11-27 12:56:43,722 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897759761/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,723 | INFO     | extracted standard info from prmon json
[2025-11-27 07:57:47] 2025-11-27 12:56:43,723 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:57:47] 2025-11-27 12:56:43,723 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:57:47] 2025-11-27 12:56:43,736 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:57:47] 2025-11-27 12:56:43,738 | INFO     | sum of square deviations: 223043674166.99512
[2025-11-27 07:57:47] 2025-11-27 12:56:43,753 | INFO     | sum of deviations: 1880628528792.3462
[2025-11-27 07:57:47] 2025-11-27 12:56:43,753 | INFO     | mean x: 1764220888.247768
[2025-11-27 07:57:47] 2025-11-27 12:56:43,753 | INFO     | mean y: 2934179.0479910714
[2025-11-27 07:57:47] 2025-11-27 12:56:43,753 | INFO     | intersect: -14872377330.777754
[2025-11-27 07:57:47] 2025-11-27 12:56:43,754 | INFO     | chi2: 7.086432496252943
[2025-11-27 07:57:47] 2025-11-27 12:56:43,755 | INFO     | sum of square deviations: 219330854251.63623
[2025-11-27 07:57:47] 2025-11-27 12:56:43,769 | INFO     | sum of deviations: 2210450483879.304
[2025-11-27 07:57:47] 2025-11-27 12:56:43,770 | INFO     | mean x: 1764220735.7575758
[2025-11-27 07:57:47] 2025-11-27 12:56:43,770 | INFO     | mean y: 2947722.177328844
[2025-11-27 07:57:47] 2025-11-27 12:56:43,770 | INFO     | intersect: -17777143420.636166
[2025-11-27 07:57:47] 2025-11-27 12:56:43,771 | INFO     | chi2: 3.4354583762603332
[2025-11-27 07:57:47] 2025-11-27 12:56:43,771 | INFO     | current chi2=3.4354583762603332 (change=51.52062228664588 %)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,772 | INFO     | sum of square deviations: 215659422869.1375
[2025-11-27 07:57:47] 2025-11-27 12:56:43,786 | INFO     | sum of deviations: 2379422991559.001
[2025-11-27 07:57:47] 2025-11-27 12:56:43,786 | INFO     | mean x: 1764220583.2663658
[2025-11-27 07:57:47] 2025-11-27 12:56:43,787 | INFO     | mean y: 2954730.741534989
[2025-11-27 07:57:47] 2025-11-27 12:56:43,787 | INFO     | intersect: -19462121091.85709
[2025-11-27 07:57:47] 2025-11-27 12:56:43,788 | INFO     | chi2: 2.1430236412208474
[2025-11-27 07:57:47] 2025-11-27 12:56:43,788 | INFO     | current chi2=2.1430236412208474 (change=37.62044517757671 %)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,789 | INFO     | sum of square deviations: 212028931096.22464
[2025-11-27 07:57:47] 2025-11-27 12:56:43,803 | INFO     | sum of deviations: 2377380335749.2544
[2025-11-27 07:57:47] 2025-11-27 12:56:43,803 | INFO     | mean x: 1764220430.7695801
[2025-11-27 07:57:47] 2025-11-27 12:56:43,803 | INFO     | mean y: 2954641.4199772985
[2025-11-27 07:57:47] 2025-11-27 12:56:43,803 | INFO     | intersect: -19778416411.831352
[2025-11-27 07:57:47] 2025-11-27 12:56:43,804 | INFO     | chi2: 2.0840237335046083
[2025-11-27 07:57:47] 2025-11-27 12:56:43,804 | INFO     | current chi2=2.0840237335046083 (change=2.753115111815927 %)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,804 | INFO     | right removable region: 880
[2025-11-27 07:57:47] 2025-11-27 12:56:43,805 | INFO     | sum of square deviations: 219330007942.66177
[2025-11-27 07:57:47] 2025-11-27 12:56:43,820 | INFO     | sum of deviations: 1662731287942.4453
[2025-11-27 07:57:47] 2025-11-27 12:56:43,820 | INFO     | mean x: 1764221040.755331
[2025-11-27 07:57:47] 2025-11-27 12:56:43,820 | INFO     | mean y: 2943112.222222222
[2025-11-27 07:57:47] 2025-11-27 12:56:43,820 | INFO     | intersect: -13371540164.48993
[2025-11-27 07:57:47] 2025-11-27 12:56:43,821 | INFO     | chi2: 5.324207970232582
[2025-11-27 07:57:47] 2025-11-27 12:56:43,821 | INFO     | current chi2=5.324207970232582 (change=24.86758361068371 %)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,821 | INFO     | left removable region: 10
[2025-11-27 07:57:47] 2025-11-27 12:56:43,822 | INFO     | sum of square deviations: 204185051453.344
[2025-11-27 07:57:47] 2025-11-27 12:56:43,836 | INFO     | sum of deviations: 2076114025132.731
[2025-11-27 07:57:47] 2025-11-27 12:56:43,837 | INFO     | mean x: 1764220705.2747126
[2025-11-27 07:57:47] 2025-11-27 12:56:43,837 | INFO     | mean y: 2967003.524137931
[2025-11-27 07:57:47] 2025-11-27 12:56:43,837 | INFO     | intersect: -17935287161.410732
[2025-11-27 07:57:47] 2025-11-27 12:56:43,838 | INFO     | chi2: 0.22639940378358617
[2025-11-27 07:57:47] 2025-11-27 12:56:43,838 | INFO     | current memory leak: 10.17 B/s (using 870 data points, chi2=0.23)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,839 | INFO     | could have reported an average CPU frequency of 3019 MHz (33 samples)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | ..............................
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . Timing measurements:
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . get job = 0 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . initial setup = 1 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . payload setup = 5 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . stage-in = 0 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . payload execution = 54603 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . stage-out = 4 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | . log creation = 1 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,840 | INFO     | ..............................
[2025-11-27 07:57:47] 2025-11-27 12:56:43,969 | INFO     | 
[2025-11-27 07:57:47] 2025-11-27 12:56:43,969 | INFO     | job summary report
[2025-11-27 07:57:47] 2025-11-27 12:56:43,969 | INFO     | --------------------------------------------------
[2025-11-27 07:57:47] 2025-11-27 12:56:43,969 | INFO     | PanDA job id: 6897759761
[2025-11-27 07:57:47] 2025-11-27 12:56:43,969 | INFO     | task id: 47556161
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | errors: (none)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | pilot state: finished 
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | transexitcode: 0
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | exeerrorcode: 0
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | exeerrordiag: 
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | exitcode: 0
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | exitmsg: OK
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | cpuconsumptiontime: 238727 s
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | nevents: 1000
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | neventsw: 0
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | pid: 3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | pgrp: 3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | corecount: 8
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | event service: False
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | sizes: {0: 2283437, 1: 2284293, 5: 2284555, 12: 2284611, 54613: 2334368, 54618: 2343546, 54626: 2343800}
[2025-11-27 07:57:47] 2025-11-27 12:56:43,970 | INFO     | --------------------------------------------------
[2025-11-27 07:57:47] 2025-11-27 12:56:43,971 | INFO     | 
[2025-11-27 07:57:47] 2025-11-27 12:56:43,971 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:57:47] 2025-11-27 12:56:43,995 | INFO     | job 6897759761 has completed (purged errors)
[2025-11-27 07:57:47] 2025-11-27 12:56:43,996 | INFO     | overall cleanup function is called
[2025-11-27 07:57:47] 2025-11-27 12:56:45,044 | INFO     | --- collectZombieJob: --- 10, [3362198]
[2025-11-27 07:57:47] 2025-11-27 12:56:45,045 | INFO     | zombie collector waiting for pid 3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:45,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:57:47] 2025-11-27 12:56:45,045 | INFO     | collected zombie processes
[2025-11-27 07:57:47] 2025-11-27 12:56:45,045 | INFO     | will attempt to kill all subprocesses of pid=3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:46,089 | INFO     | PID=3324623 has CPU usage=22.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 07:57:47] 2025-11-27 12:56:46,089 | INFO     | .. there are 51 such processes running
[2025-11-27 07:57:47] 2025-11-27 12:56:46,128 | INFO     | process IDs to be killed: [3362198] (in reverse order)
[2025-11-27 07:57:47] 2025-11-27 12:56:46,459 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:57:47] 2025-11-27 12:56:46,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:57:47] 2025-11-27 12:56:46,545 | INFO     | did not find any defunct processes belonging to 3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:46,570 | INFO     | did not find any defunct processes belonging to 3362198
[2025-11-27 07:57:47] 2025-11-27 12:56:46,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:57:47] 2025-11-27 12:56:46,573 | INFO     | ready for new job
[2025-11-27 07:57:47] 2025-11-27 12:56:46,573 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:57:47] 2025-11-27 12:56:46,582 | INFO     | ***************************************
[2025-11-27 07:57:47] 2025-11-27 12:56:46,586 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:57:47] 2025-11-27 12:56:46,587 | INFO     | ***************************************
[2025-11-27 07:57:47] 2025-11-27 12:56:46,587 | INFO     | 
[2025-11-27 07:57:47] 2025-11-27 12:56:46,590 | INFO     | architecture information:
[2025-11-27 07:57:47] 2025-11-27 12:56:46,591 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:57:47] 2025-11-27 12:56:46,644 | INFO     | cat /etc/os-release:
[2025-11-27 07:57:47] NAME="CentOS Linux"
[2025-11-27 07:57:47] VERSION="7 (Core)"
[2025-11-27 07:57:47] ID="centos"
[2025-11-27 07:57:47] ID_LIKE="rhel fedora"
[2025-11-27 07:57:47] VERSION_ID="7"
[2025-11-27 07:57:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:57:47] ANSI_COLOR="0;31"
[2025-11-27 07:57:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:57:47] HOME_URL="https://www.centos.org/"
[2025-11-27 07:57:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:57:47] 
[2025-11-27 07:57:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:57:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:57:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:57:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:57:47] 
[2025-11-27 07:57:47] 2025-11-27 12:56:46,644 | INFO     | ***************************************
[2025-11-27 07:57:47] 2025-11-27 12:56:47,148 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 07:57:47] 2025-11-27 12:56:47,185 | INFO     | sufficient remaining disk space (64820871168 B)
[2025-11-27 07:57:47] 2025-11-27 12:56:47,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:57:47] 2025-11-27 12:56:47,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:57:47] 2025-11-27 12:56:47,186 | INFO     | update_server=False
[2025-11-27 07:57:47] 2025-11-27 12:56:47,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:57:47] 2025-11-27 12:56:47,202 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:57:47] 2025-11-27 12:56:47,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:57:47] 2025-11-27 12:56:47,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:57:47] 2025-11-27 12:56:47,203 | INFO     | aborting loop
[2025-11-27 07:57:47] 2025-11-27 12:56:47,665 | INFO     | all job control threads have been joined
[2025-11-27 07:57:47] 2025-11-27 12:56:48,147 | INFO     | all data control threads have been joined
[2025-11-27 07:57:47] 2025-11-27 12:56:48,209 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,209 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,416 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,591 | INFO     | all payload control threads have been joined
[2025-11-27 07:57:47] 2025-11-27 12:56:48,600 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,615 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,672 | INFO     | [job] control thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,771 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,798 | INFO     | [job] validate thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,893 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:48,929 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:49,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:57:47] 2025-11-27 12:56:49,153 | INFO     | [data] control thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:49,209 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:49,600 | INFO     | [payload] control thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:50,020 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:56:51,220 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:57:47] 2025-11-27 12:57:19,153 | INFO     | PID=3324623 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:57:47] 2025-11-27 12:57:19,154 | INFO     | .. there are 51 such processes running
[2025-11-27 07:57:47] 2025-11-27 12:57:19,164 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:57:47] 2025-11-27 12:57:19,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:57:47] 2025-11-27 12:57:19,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:57:47] 2025-11-27 12:57:40,358 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:57:47] 2025-11-27 12:57:42,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078349236032)>', '<ExcThread(monitor, started 140077715932928)>']
[2025-11-27 07:57:47] 2025-11-27 12:57:42,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:57:47] 2025-11-27 12:57:42,428 | INFO     | [monitor] control thread has ended
[2025-11-27 07:57:47] 2025-11-27 12:57:47,095 | INFO     | all workflow threads have been joined
[2025-11-27 07:57:47] 2025-11-27 12:57:47,096 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:57:47] 2025-11-27 12:57:47,096 | INFO     | traces error code: 0
[2025-11-27 07:57:47] 2025-11-27 12:57:47,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:57:47] 2025-11-27 12:57:47,300 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:57:47] 2025-11-27 12:57:47,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:57:47] 2025-11-27 12:57:47,306 [wrapper] pilotpid: 3324623
[2025-11-27 07:57:47] 2025-11-27 12:57:47,310 [wrapper] Pilot exit status: 0
[2025-11-27 07:57:47] 2025-11-27 12:57:47,333 [wrapper] pandaids: 6897759761 6897759761
[2025-11-27 07:57:47] 2025-11-27 12:57:47,425 [wrapper] cleanup supervisor_pilot 3278342 3324624
[2025-11-27 07:57:47] 2025-11-27 12:57:47,428 [wrapper] Test setup, not cleaning
[2025-11-27 07:57:47] 2025-11-27 12:57:47,431 [wrapper] apfmon messages muted
[2025-11-27 07:57:47] 2025-11-27 12:57:47,433 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:57:47] 2025-11-27 12:57:47,440 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:57:47]  *** Error codes and diagnostics ***
[2025-11-27 07:57:47]     "exeErrorCode": 0,
[2025-11-27 07:57:47]     "exeErrorDiag": "",
[2025-11-27 07:57:47]     "pilotErrorCode": 0,
[2025-11-27 07:57:47]     "pilotErrorDiag": "",
[2025-11-27 07:57:47]  *** Listing of results directory ***
[2025-11-27 07:57:47] total 1718776
[2025-11-27 07:57:47] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 07:57:47] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:57:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:58 run_atlas
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:58 job.xml
[2025-11-27 07:57:47] -rw-r--r--. 3 boincer umatlas 407979321 Nov 26 15:58 EVNT.47483658._002327.pool.root.1
[2025-11-27 07:57:47] -rw-r--r--. 3 boincer umatlas 407979321 Nov 26 15:58 ATLAS.root_0
[2025-11-27 07:57:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:58 start_atlas.sh
[2025-11-27 07:57:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:58 shared
[2025-11-27 07:57:47] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 15:58 input.tar.gz
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:58 boinc_lockfile
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:45 pandaJob.out
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas        57 Nov 26 16:45 setup.sh.local
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:43 boinc_task_state.xml
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 07:54 init_data.xml
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas 922221586 Nov 27 07:54 HITS.47556161._003096.pool.root.1
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas      1069 Nov 27 07:56 memory_monitor_summary.json
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas   2046442 Nov 27 07:56 log.47556161._003096.job.log.tgz.1
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas      8647 Nov 27 07:56 heartbeat.json
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas        96 Nov 27 07:57 pilot_heartbeat.json
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:57 boinc_mmap_file
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:57 wrapper_checkpoint.txt
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas      4824 Nov 27 07:57 pilotlog.txt
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas   6915337 Nov 27 07:57 log.47556161._003096.job.log.1
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas       353 Nov 27 07:57 output.list
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:57 runtime_log
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas   8980480 Nov 27 07:57 result.tar.gz
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 07:57 runtime_log.err
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas       789 Nov 27 07:57 8RbNDmXbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrcMKDma8j7Ao.diag
[2025-11-27 07:57:47] -rw-r--r--. 1 boincer umatlas     23676 Nov 27 07:57 stderr.txt
[2025-11-27 07:57:47] HITS file was successfully produced:
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas 922221586 Nov 27 07:54 shared/HITS.pool.root.1
[2025-11-27 07:57:47]  *** Contents of shared directory: ***
[2025-11-27 07:57:47] total 1308400
[2025-11-27 07:57:47] -rw-r--r--. 3 boincer umatlas 407979321 Nov 26 15:58 ATLAS.root_0
[2025-11-27 07:57:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:58 start_atlas.sh
[2025-11-27 07:57:47] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 15:58 input.tar.gz
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas 922221586 Nov 27 07:54 HITS.pool.root.1
[2025-11-27 07:57:47] -rw-------. 1 boincer umatlas   8980480 Nov 27 07:57 result.tar.gz
07:57:48 (3306078): run_atlas exited; CPU time 240544.468386
07:57:48 (3306078): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN