Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:29:27 (3165071): wrapper (7.7.26015): starting
14:29:27 (3165071): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:29:27] Arguments: --nthreads 10
[2025-11-26 14:29:27] Threads: 10
[2025-11-26 14:29:27] Checking for CVMFS
[2025-11-26 14:29:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:29:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:29:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:29:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:29:28] 2.13.3.0 10079 28774 417156 153333 2 449 29930212 32935936 61403 16776704 0 317063768 99.794 163213021 29083 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:29:28] CVMFS is ok
[2025-11-26 14:29:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:29:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:29:28] Further information can be found at the LHC@home message board.
[2025-11-26 14:29:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:29:28] Checking for apptainer binary...
[2025-11-26 14:29:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:29:28] Running /usr/bin/apptainer --version
[2025-11-26 14:29:28] apptainer version 1.4.4-1.el9
[2025-11-26 14:29:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:29:47] lc-12-33.aglt2.org
[2025-11-26 14:29:47] apptainer works
[2025-11-26 14:29:47] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:29:47] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:29:48] Starting ATLAS job with PandaID=6897759719
[2025-11-26 14:29:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:34:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:34:01] 2025-11-27 07:33:22,022 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897759719/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,023 | INFO     | extracted standard info from prmon json
[2025-11-27 02:34:01] 2025-11-27 07:33:22,023 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:34:01] 2025-11-27 07:33:22,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:34:01] 2025-11-27 07:33:22,046 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:34:01] 2025-11-27 07:33:22,047 | INFO     | sum of square deviations: 110985488072.05786
[2025-11-27 02:34:01] 2025-11-27 07:33:22,071 | INFO     | sum of deviations: 464052568344.39514
[2025-11-27 02:34:01] 2025-11-27 07:33:22,071 | INFO     | mean x: 1764207101.1450703
[2025-11-27 02:34:01] 2025-11-27 07:33:22,071 | INFO     | mean y: 3184643.1126760566
[2025-11-27 02:34:01] 2025-11-27 07:33:22,071 | INFO     | intersect: -7373318813.323494
[2025-11-27 02:34:01] 2025-11-27 07:33:22,072 | INFO     | chi2: 11.476628418960736
[2025-11-27 02:34:01] 2025-11-27 07:33:22,077 | INFO     | sum of square deviations: 108657797367.65408
[2025-11-27 02:34:01] 2025-11-27 07:33:22,095 | INFO     | sum of deviations: 743297051783.4296
[2025-11-27 02:34:01] 2025-11-27 07:33:22,095 | INFO     | mean x: 1764206948.6624115
[2025-11-27 02:34:01] 2025-11-27 07:33:22,095 | INFO     | mean y: 3202928.0312056737
[2025-11-27 02:34:01] 2025-11-27 07:33:22,095 | INFO     | intersect: -12065234454.69615
[2025-11-27 02:34:01] 2025-11-27 07:33:22,100 | INFO     | chi2: 7.827267496108862
[2025-11-27 02:34:01] 2025-11-27 07:33:22,101 | INFO     | current chi2=7.827267496108862 (change=31.79819708044831 %)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,102 | INFO     | sum of square deviations: 106362940731.95848
[2025-11-27 02:34:01] 2025-11-27 07:33:22,119 | INFO     | sum of deviations: 1053534769602.7317
[2025-11-27 02:34:01] 2025-11-27 07:33:22,119 | INFO     | mean x: 1764206796.1814287
[2025-11-27 02:34:01] 2025-11-27 07:33:22,119 | INFO     | mean y: 3223543.3485714286
[2025-11-27 02:34:01] 2025-11-27 07:33:22,119 | INFO     | intersect: -17471408013.055096
[2025-11-27 02:34:01] 2025-11-27 07:33:22,124 | INFO     | chi2: 3.6069555731198295
[2025-11-27 02:34:01] 2025-11-27 07:33:22,125 | INFO     | current chi2=3.6069555731198295 (change=53.918074539896075 %)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,125 | INFO     | sum of square deviations: 104099963191.80435
[2025-11-27 02:34:01] 2025-11-27 07:33:22,143 | INFO     | sum of deviations: 1160805137909.4065
[2025-11-27 02:34:01] 2025-11-27 07:33:22,143 | INFO     | mean x: 1764206643.677698
[2025-11-27 02:34:01] 2025-11-27 07:33:22,143 | INFO     | mean y: 3230761.9035971225
[2025-11-27 02:34:01] 2025-11-27 07:33:22,143 | INFO     | intersect: -19669207858.86442
[2025-11-27 02:34:01] 2025-11-27 07:33:22,144 | INFO     | chi2: 2.9179812236274127
[2025-11-27 02:34:01] 2025-11-27 07:33:22,145 | INFO     | current chi2=2.9179812236274127 (change=19.101270739980023 %)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,145 | INFO     | right removable region: 694
[2025-11-27 02:34:01] 2025-11-27 07:33:22,150 | INFO     | sum of square deviations: 108656694849.32661
[2025-11-27 02:34:01] 2025-11-27 07:33:22,168 | INFO     | sum of deviations: 213996232997.2506
[2025-11-27 02:34:01] 2025-11-27 07:33:22,168 | INFO     | mean x: 1764207253.6638298
[2025-11-27 02:34:01] 2025-11-27 07:33:22,168 | INFO     | mean y: 3201004.625531915
[2025-11-27 02:34:01] 2025-11-27 07:33:22,168 | INFO     | intersect: -3471354401.5922585
[2025-11-27 02:34:01] 2025-11-27 07:33:22,175 | INFO     | chi2: 8.83364578607202
[2025-11-27 02:34:01] 2025-11-27 07:33:22,176 | INFO     | current chi2=8.83364578607202 (change=23.029260305423833 %)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,176 | INFO     | left removable region: 10
[2025-11-27 02:34:01] 2025-11-27 07:33:22,177 | INFO     | sum of square deviations: 99234214021.6841
[2025-11-27 02:34:01] 2025-11-27 07:33:22,194 | INFO     | sum of deviations: 860016457713.3164
[2025-11-27 02:34:01] 2025-11-27 07:33:22,197 | INFO     | mean x: 1764206918.2105262
[2025-11-27 02:34:01] 2025-11-27 07:33:22,198 | INFO     | mean y: 3252006.9005847955
[2025-11-27 02:34:01] 2025-11-27 07:33:22,198 | INFO     | intersect: -15286303107.036259
[2025-11-27 02:34:01] 2025-11-27 07:33:22,199 | INFO     | chi2: 0.10147187937026676
[2025-11-27 02:34:01] 2025-11-27 07:33:22,199 | INFO     | current memory leak: 8.67 B/s (using 684 data points, chi2=0.10)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | could have reported an average CPU frequency of 2762 MHz (27 samples)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | ..............................
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . Timing measurements:
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . get job = 0 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . initial setup = 3 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . payload setup = 13 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . stage-in = 0 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . payload execution = 43300 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,200 | INFO     | . stage-out = 7 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,201 | INFO     | . log creation = 1 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,201 | INFO     | ..............................
[2025-11-27 02:34:01] 2025-11-27 07:33:22,402 | INFO     | 
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | job summary report
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | --------------------------------------------------
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | PanDA job id: 6897759719
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | task id: 47556161
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | errors: (none)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | pilot state: finished 
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | transexitcode: 0
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | exeerrorcode: 0
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | exeerrordiag: 
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | exitcode: 0
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | exitmsg: OK
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | cpuconsumptiontime: 254576 s
[2025-11-27 02:34:01] 2025-11-27 07:33:22,403 | INFO     | nevents: 1000
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | neventsw: 0
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | pid: 3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | pgrp: 3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | corecount: 10
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | event service: False
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 13: 2284583, 22: 2284639, 43317: 2328367, 43326: 2337445, 43353: 2337635}
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | --------------------------------------------------
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | 
[2025-11-27 02:34:01] 2025-11-27 07:33:22,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 02:34:01] 2025-11-27 07:33:22,460 | INFO     | time since job start (43386s) is within the limit (172800.0s)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | job 6897759719 has completed (purged errors)
[2025-11-27 02:34:01] 2025-11-27 07:33:22,521 | INFO     | overall cleanup function is called
[2025-11-27 02:34:01] 2025-11-27 07:33:23,596 | INFO     | --- collectZombieJob: --- 10, [3187494]
[2025-11-27 02:34:01] 2025-11-27 07:33:23,596 | INFO     | zombie collector waiting for pid 3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:23,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:34:01] 2025-11-27 07:33:23,597 | INFO     | collected zombie processes
[2025-11-27 02:34:01] 2025-11-27 07:33:23,597 | INFO     | will attempt to kill all subprocesses of pid=3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:26,203 | INFO     | PID=3178931 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:34:01] 2025-11-27 07:33:26,203 | INFO     | .. there are 87 such processes running
[2025-11-27 02:34:01] 2025-11-27 07:33:26,417 | INFO     | process IDs to be killed: [3187494] (in reverse order)
[2025-11-27 02:34:01] 2025-11-27 07:33:27,040 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:34:01] 2025-11-27 07:33:27,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:34:01] 2025-11-27 07:33:27,101 | INFO     | did not find any defunct processes belonging to 3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:27,129 | INFO     | did not find any defunct processes belonging to 3187494
[2025-11-27 02:34:01] 2025-11-27 07:33:27,134 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:34:01] 2025-11-27 07:33:27,134 | INFO     | ready for new job
[2025-11-27 02:34:01] 2025-11-27 07:33:27,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:34:01] 2025-11-27 07:33:27,159 | INFO     | ***************************************
[2025-11-27 02:34:01] 2025-11-27 07:33:27,159 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:34:01] 2025-11-27 07:33:27,159 | INFO     | ***************************************
[2025-11-27 02:34:01] 2025-11-27 07:33:27,159 | INFO     | 
[2025-11-27 02:34:01] 2025-11-27 07:33:27,167 | INFO     | architecture information:
[2025-11-27 02:34:01] 2025-11-27 07:33:27,168 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:34:01] 2025-11-27 07:33:27,279 | INFO     | cat /etc/os-release:
[2025-11-27 02:34:01] NAME="CentOS Linux"
[2025-11-27 02:34:01] VERSION="7 (Core)"
[2025-11-27 02:34:01] ID="centos"
[2025-11-27 02:34:01] ID_LIKE="rhel fedora"
[2025-11-27 02:34:01] VERSION_ID="7"
[2025-11-27 02:34:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:34:01] ANSI_COLOR="0;31"
[2025-11-27 02:34:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:34:01] HOME_URL="https://www.centos.org/"
[2025-11-27 02:34:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:34:01] 
[2025-11-27 02:34:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:34:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:34:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:34:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:34:01] 
[2025-11-27 02:34:01] 2025-11-27 07:33:27,280 | INFO     | ***************************************
[2025-11-27 02:34:01] 2025-11-27 07:33:27,783 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 02:34:01] 2025-11-27 07:33:27,845 | INFO     | sufficient remaining disk space (65334673408 B)
[2025-11-27 02:34:01] 2025-11-27 07:33:27,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:34:01] 2025-11-27 07:33:27,845 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:34:01] 2025-11-27 07:33:27,845 | INFO     | update_server=False
[2025-11-27 02:34:01] 2025-11-27 07:33:27,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:34:01] 2025-11-27 07:33:27,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:34:01] 2025-11-27 07:33:27,929 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:34:01] 2025-11-27 07:33:27,930 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:34:01] 2025-11-27 07:33:27,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:34:01] 2025-11-27 07:33:27,930 | INFO     | will abort loop
[2025-11-27 02:34:01] 2025-11-27 07:33:28,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:34:01] 2025-11-27 07:33:28,249 | INFO     | all data control threads have been joined
[2025-11-27 02:34:01] 2025-11-27 07:33:28,286 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:34:01] 2025-11-27 07:33:28,851 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:28,861 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:28,935 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:28,992 | INFO     | all payload control threads have been joined
[2025-11-27 02:34:01] 2025-11-27 07:33:28,993 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:29,238 | INFO     | all job control threads have been joined
[2025-11-27 02:34:01] 2025-11-27 07:33:29,255 | INFO     | [data] control thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:29,560 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:29,560 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:29,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:29,999 | INFO     | [payload] control thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,055 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,165 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,179 | INFO     | [job] validate thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,199 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:30,244 | INFO     | [job] control thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:32,314 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:34:01] 2025-11-27 07:33:33,914 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:34:01] 2025-11-27 07:33:34,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864308741952)>', '<ExcThread(monitor, started 139863596726016)>']
[2025-11-27 02:34:01] 2025-11-27 07:33:39,407 | INFO     | all workflow threads have been joined
[2025-11-27 02:34:01] 2025-11-27 07:33:39,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:34:01] 2025-11-27 07:33:39,409 | INFO     | traces error code: 0
[2025-11-27 02:34:01] 2025-11-27 07:33:39,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:34:01] 2025-11-27 07:34:00,182 | INFO     | PID=3178931 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:34:01] 2025-11-27 07:34:00,183 | INFO     | .. there are 87 such processes running
[2025-11-27 02:34:01] 2025-11-27 07:34:00,184 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:34:01] 2025-11-27 07:34:00,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:34:01] 2025-11-27 07:34:00,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:34:01] 2025-11-27 07:34:00,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:34:01] 2025-11-27 07:34:00,184 | INFO     | [monitor] control thread has ended
[2025-11-27 02:34:01] 2025-11-27 07:34:00,598 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:34:01] 2025-11-27 07:34:00,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:34:01] 2025-11-27 07:34:00,636 [wrapper] pilotpid: 3178931
[2025-11-27 02:34:01] 2025-11-27 07:34:00,655 [wrapper] Pilot exit status: 0
[2025-11-27 02:34:01] 2025-11-27 07:34:00,768 [wrapper] pandaids: 6897759719
[2025-11-27 02:34:01] 2025-11-27 07:34:01,098 [wrapper] cleanup supervisor_pilot  442052 3178932
[2025-11-27 02:34:01] 2025-11-27 07:34:01,108 [wrapper] Test setup, not cleaning
[2025-11-27 02:34:01] 2025-11-27 07:34:01,133 [wrapper] apfmon messages muted
[2025-11-27 02:34:01] 2025-11-27 07:34:01,136 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:34:01] 2025-11-27 07:34:01,146 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:34:01]  *** Error codes and diagnostics ***
[2025-11-27 02:34:01]     "exeErrorCode": 0,
[2025-11-27 02:34:01]     "exeErrorDiag": "",
[2025-11-27 02:34:01]     "pilotErrorCode": 0,
[2025-11-27 02:34:01]     "pilotErrorDiag": "",
[2025-11-27 02:34:01]  *** Listing of results directory ***
[2025-11-27 02:34:01] total 1314360
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 02:34:01] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:34:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:29 run_atlas
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:29 job.xml
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas 409997636 Nov 26 14:29 EVNT.47483658._002323.pool.root.1
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:29 start_atlas.sh
[2025-11-27 02:34:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:29 shared
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 14:29 input.tar.gz
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:29 boinc_lockfile
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 14:29 pandaJob.out
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas        57 Nov 26 14:29 setup.sh.local
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas    991522 Nov 26 14:30 agis_schedconf.cvmfs.json
[2025-11-27 02:34:01] drwx------. 5 boincer umatlas      4096 Nov 26 14:30 pilot3
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:15 boinc_task_state.xml
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas 917118339 Nov 27 02:30 HITS.47556161._003054.pool.root.1
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 02:31 init_data.xml
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas      1060 Nov 27 02:32 memory_monitor_summary.json
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas   2131867 Nov 27 02:32 log.47556161._003054.job.log.tgz.1
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas      7954 Nov 27 02:33 heartbeat.json
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas        95 Nov 27 02:34 pilot_heartbeat.json
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas       823 Nov 27 02:34 pilotlog.txt
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas   5306664 Nov 27 02:34 log.47556161._003054.job.log.1
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:34 boinc_mmap_file
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas       353 Nov 27 02:34 output.list
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:34 runtime_log
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas   7454720 Nov 27 02:34 result.tar.gz
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas       660 Nov 27 02:34 ucuMDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuiJKDmxX2Knm.diag
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 02:34 runtime_log.err
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:34 wrapper_checkpoint.txt
[2025-11-27 02:34:01] -rw-r--r--. 1 boincer umatlas     21413 Nov 27 02:34 stderr.txt
[2025-11-27 02:34:01] HITS file was successfully produced:
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas 917118339 Nov 27 02:30 shared/HITS.pool.root.1
[2025-11-27 02:34:01]  *** Contents of shared directory: ***
[2025-11-27 02:34:01] total 1303900
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas 409997636 Nov 26 14:29 ATLAS.root_0
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:29 start_atlas.sh
[2025-11-27 02:34:01] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 14:29 input.tar.gz
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas 917118339 Nov 27 02:30 HITS.pool.root.1
[2025-11-27 02:34:01] -rw-------. 1 boincer umatlas   7454720 Nov 27 02:34 result.tar.gz
02:34:22 (3165071): run_atlas exited; CPU time 256703.246071
02:34:22 (3165071): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN